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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016630 ID=TCONS_00016630|Name=TCONS_00016630|organism=Clytia hemisphaerica|type=transcript|length=1799bp
ttttttgcttgaccatgaagcccaatccaattcctacgaagtagaccaaa
aatgacgatttctaactcaaactgggcattacatacatagcccatgtctg
atatatacgacattggcacttaaagggttaatattTGACCTTAAAATGAA
GATCTTAGTTAATGTTTGACTCGAAAGGTTATGTTAATTTCAGTGGGAAT
TTTATTGGACGGCGATGGCtgatattagcgagtttatttattttcaattc
taAAGACAGTAAAGTGactaaagcgatttggaaaaacccgcagttctgac
ccacaaaatcgagggcggtaaaagtactgatttactgtcgtcctcagtca
gtcagaaTGTAGACAacttagaaccttaccgtctccgtcactTTAAAACG
TACATACTCACTATTAAAGGTGGGTATTTAAATCAGCGGATTAAGATCGA
AACCTCTAAAAAAACCCAAATCTTTCGAATCTAACCCCTACTtaaatacc
gtattacttcgaataaacgcccggggcgtttatttaattttttcgatttt
aagagGGGCGTTTActtgagggggcgtttaaaagaaggggacgtttatta
aattatttcagTTTCaagtcgaatatttagagcaaatatgcgtttaaaag
aagggggcgtttattcgaagtaatacggtattacACTTCAGGTAGGAAGA
ATGAACCAGCATTTTTATATTAAGTTGGAGAAGATTTCTGATTAAATGAA
GACGTTGGTCATTGTAACAGCATTATTCTTGACACTCAATGATTGCAAAA
AGGTACCCACAAAAGCAGAAATTCAGGAAATATCTGGAAGCAATAACGAG
CATCCTAACAAAAAGGACTACTTtggaaaaaatgtcaaaatcaaCAATGA
TAGTTTATTTGTTCTGGCTACCAACGGTGTTTACGTTTACCACAGAACCA
ATCACACGGCCAAAACATTAAATCAAATTCAGAAGTTTTCATCTCACACA
GTGTATGGGTTCAGTCAGGGCATTGCGATAGATAACGGTTACTTGTTTGT
TCAAACGGCATTCTGGGATACAACAGTGGGGATTGTATGCCAATGTTTTG
tatacattttgaaaaacgGTCTTTGGGAATATTCAAGTTCCTTAAAGATT
ACTAAGCAAAGTTATGACAATGATTTATATGGGAACTCGATGTCAGCTCA
TAATGGAACATTAGTGATCACATCTCCAAGTAGATTCAAGTCGCAATATC
TAGCAATTGCTGGTAAAATTTACATTTACACTATTGGCTCTTGGAAAAGA
GAAGAATTGTATAAATTGGGCCACTTTGCGTTTGGAATCTCCGCAGCAAT
ATATAATGATACGATTTCCGTAGGAGATACTAGTTGTACTGATACTACAT
ATGATTGTAAAGTTTACATTTATACCAGAGGTAAATCAGAGGAATGGGTG
GAGCAACAAGCTATATTCCCAGAGAATAAAACTCATTACGGAAAATTCGG
TAGCGTGGTGAcattgaatgataaatttttatttgtaatCGGTTATGAAA
AGTCTTCTAAAGGTTATACAAGGACAATCTTTGTATATAAAAAAGCAGTG
TTTTATCAGACTGTCAAGTATGACCTGCATCAATTATTGCCAGATACTGC
TGAAATTTACGATCCAACACAATTTACTACAATCACCTCATCCTTAAGCA
CGTATGGGAATTACTTGGTAACTAGTACAGCTGCTTTGAACCATGATGGT
TCTGTGTTTGTTTATACATACAATGATTTCACAGATACTTGGATCCAAA Run BLAST on NCBI protein sequence of TCONS_00016630-protein >TCONS_00016630-protein ID=TCONS_00016630-protein|Name=TCONS_00016630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MKTLVIVTALFLTLNDCKKVPTKAEIQEISGSNNEHPNKKDYFGKNVKIN
NDSLFVLATNGVYVYHRTNHTAKTLNQIQKFSSHTVYGFSQGIAIDNGYL
FVQTAFWDTTVGIVCQCFVYILKNGLWEYSSSLKITKQSYDNDLYGNSMS
AHNGTLVITSPSRFKSQYLAIAGKIYIYTIGSWKREELYKLGHFAFGISA
AIYNDTISVGDTSCTDTTYDCKVYIYTRGKSEEWVEQQAIFPENKTHYGK
FGSVVTLNDKFLFVIGYEKSSKGYTRTIFVYKKAVFYQTVKYDLHQLLPD
TAEIYDPTQFTTITSSLSTYGNYLVTSTAALNHDGSVFVYTYNDFTDTWI
Q Run BLAST on NCBI transcript from alignment at sc0000243:279019..280817 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016630 ID=TCONS_00016630|Name=TCONS_00016630|organism=Clytia hemisphaerica|type=transcript|length=1799bp|location=Sequence derived from alignment at sc0000243:279019..280817 (Clytia hemisphaerica)
TTTGGATCCAAGTATCTGTGAAATCATTGTATGTATAAACAAACACAGAA
CCATCATGGTTCAAAGCAGCTGTACTAGTTACCAAGTAATTCCCATACGT
GCTTAAGGATGAGGTGATTGTAGTAAATTGTGTTGGATCGTAAATTTCAG
CAGTATCTGGCAATAATTGATGCAGGTCATACTTGACAGTCTGATAAAAC
ACTGCTTTTTTATATACAAAGATTGTCCTTGTATAACCTTTAGAAGACTT
TTCATAACCGattacaaataaaaatttatcattcaatgTCACCACGCTAC
CGAATTTTCCGTAATGAGTTTTATTCTCTGGGAATATAGCTTGTTGCTCC
ACCCATTCCTCTGATTTACCTCTGGTATAAATGTAAACTTTACAATCATA
TGTAGTATCAGTACAACTAGTATCTCCTACGGAAATCGTATCATTATATA
TTGCTGCGGAGATTCCAAACGCAAAGTGGCCCAATTTATACAATTCTTCT
CTTTTCCAAGAGCCAATAGTGTAAATGTAAATTTTACCAGCAATTGCTAG
ATATTGCGACTTGAATCTACTTGGAGATGTGATCACTAATGTTCCATTAT
GAGCTGACATCGAGTTCCCATATAAATCATTGTCATAACTTTGCTTAGTA
ATCTTTAAGGAACTTGAATATTCCCAAAGACcgtttttcaaaatgtataC
AAAACATTGGCATACAATCCCCACTGTTGTATCCCAGAATGCCGTTTGAA
CAAACAAGTAACCGTTATCTATCGCAATGCCCTGACTGAACCCATACACT
GTGTGAGATGAAAACTTCTGAATTTGATTTAATGTTTTGGCCGTGTGATT
GGTTCTGTGGTAAACGTAAACACCGTTGGTAGCCAGAACAAATAAACTAT
CATTGttgattttgacattttttccaAAGTAGTCCTTTTTGTTAGGATGC
TCGTTATTGCTTCCAGATATTTCCTGAATTTCTGCTTTTGTGGGTACCTT
TTTGCAATCATTGAGTGTCAAGAATAATGCTGTTACAATGACCAACGTCT
TCATTTAATCAGAAATCTTCTCCAACTTAATATAAAAATGCTGGTTCATT
CTTCCTACCTGAAGTgtaataccgtattacttcgaataaacgcccccttc
ttttaaacgcatatttgctctaaatattcgacttGAAActgaaataattt
aataaacgtccccttcttttaaacgccccctcaagTAAACGCCCctctta
aaatcgaaaaaattaaataaacgccccgggcgtttattcgaagtaatacg
gtatttaAGTAGGGGTTAGATTCGAAAGATTTGGGTTTTTTTAGAGGTTT
CGATCTTAATCCGCTGATTTAAATACCCACCTTTAATAGTGAGTATGTAC
GTTTTAAagtgacggagacggtaaggttctaagtTGTCTACAttctgact
gactgaggacgacagtaaatcagtacttttaccgccctcgattttgtggg
tcagaactgcgggtttttccaaatcgctttagtCACTTTACTGTCTTtag
aattgaaaataaataaactcgctaatatcaGCCATCGCCGTCCAATAAAA
TTCCCACTGAAATTAACATAACCTTTCGAGTCAAACATTAACTAAGATCT
TCATTTTAAGGTCAaatattaaccctttaagtgccaatgtcgtatatatc
agacatgggctatgtatgtaatgcccagtttgagttagaaatcgtcattt
ttggtctacttcgtaggaattggattgggcttcatggtcaagcaaaaaa Coding sequence (CDS) from alignment at sc0000243:279019..280817 >TCONS_00016630 ID=TCONS_00016630|Name=TCONS_00016630|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0000243:279019..280817 (Clytia hemisphaerica)
TTGGATCCAAGTATCTGTGAAATCATTGTATGTATAAACAAACACAGAAC
CATCATGGTTCAAAGCAGCTGTACTAGTTACCAAGTAATTCCCATACGTG
CTTAAGGATGAGGTGATTGTAGTAAATTGTGTTGGATCGTAAATTTCAGC
AGTATCTGGCAATAATTGATGCAGGTCATACTTGACAGTCTGATAAAACA
CTGCTTTTTTATATACAAAGATTGTCCTTGTATAACCTTTAGAAGACTTT
TCATAACCGattacaaataaaaatttatcattcaatgTCACCACGCTACC
GAATTTTCCGTAATGAGTTTTATTCTCTGGGAATATAGCTTGTTGCTCCA
CCCATTCCTCTGATTTACCTCTGGTATAAATGTAAACTTTACAATCATAT
GTAGTATCAGTACAACTAGTATCTCCTACGGAAATCGTATCATTATATAT
TGCTGCGGAGATTCCAAACGCAAAGTGGCCCAATTTATACAATTCTTCTC
TTTTCCAAGAGCCAATAGTGTAAATGTAAATTTTACCAGCAATTGCTAGA
TATTGCGACTTGAATCTACTTGGAGATGTGATCACTAATGTTCCATTATG
AGCTGACATCGAGTTCCCATATAAATCATTGTCATAACTTTGCTTAGTAA
TCTTTAAGGAACTTGAATATTCCCAAAGACcgtttttcaaaatgtataCA
AAACATTGGCATACAATCCCCACTGTTGTATCCCAGAATGCCGTTTGAAC
AAACAAGTAACCGTTATCTATCGCAATGCCCTGACTGAACCCATACACTG
TGTGAGATGAAAACTTCTGAATTTGATTTAATGTTTTGGCCGTGTGATTG
GTTCTGTGGTAAACGTAAACACCGTTGGTAGCCAGAACAAATAAACTATC
ATTGttgattttgacattttttccaAAGTAGTCCTTTTTGTTAGGATGCT
CGTTATTGCTTCCAGATATTTCCTGAATTTCTGCTTTTGTGGGTACCTTT
TTGCAATCATTGAGTGTCAAGAATAATGCTGTTACAATGACCAACGTCTT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016630-exon-sc0000243-1491911889:279019..280817 | TCONS_00016630-exon-sc0000243-1491911889:279019..280817 | Clytia hemisphaerica | exon |
| TCONS_00016630-exon-sc0000243-1510915933:279019..280817 | TCONS_00016630-exon-sc0000243-1510915933:279019..280817 | Clytia hemisphaerica | exon |
| TCONS_00016630-exon-sc0000243-1575043694:279019..280817 | TCONS_00016630-exon-sc0000243-1575043694:279019..280817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:279019..280817 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015915 | Kelch-typ_b-propeller |
| IPR011047 | Quinoprotein_ADH-like_supfam |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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