TCONS_00016637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016637
Unique NameTCONS_00016637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016637 ID=TCONS_00016637|Name=TCONS_00016637|organism=Clytia hemisphaerica|type=transcript|length=282bp
CAGTATATCAGAGACCACTTTGATTATTCTAATTGAAAAAGGACCGCTGA
CAGATTTATCTTGATTAAGTTTGAGCATAATACAATGGATATCTTCAGGA
GTTACTTCTCTAAAAGAGAAAGACTTGCTTGCAGATAGAGATTCGATGAT
GCGAAGTATACTAGGATGGTTTTCAAGCGGATCGGTTTCAGAATCTTCTG
GAAGACTGCATTCTGAAGTTTTTAGGCCGAGATGGGAagcaatatttaca
aaatagtCGTTAAAAATTTTTGCTATGGAGGC
Run BLAST on NCBI

transcript from alignment at sc0000243:404885..405166

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016637 ID=TCONS_00016637|Name=TCONS_00016637|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at sc0000243:404885..405166 (Clytia hemisphaerica)
GCCTCCATAGCAAAAATTTTTAACGactattttgtaaatattgctTCCCA
TCTCGGCCTAAAAACTTCAGAATGCAGTCTTCCAGAAGATTCTGAAACCG
ATCCGCTTGAAAACCATCCTAGTATACTTCGCATCATCGAATCTCTATCT
GCAAGCAAGTCTTTCTCTTTTAGAGAAGTAACTCCTGAAGATATCCATTG
TATTATGCTCAAACTTAATCAAGATAAATCTGTCAGCGGTCCTTTTTCAA
TTAGAATAATCAAAGTGGTCTCTGATATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009307XLOC_009307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016637-exon-sc0000243-1491911889:404885..405166TCONS_00016637-exon-sc0000243-1491911889:404885..405166Clytia hemisphaericaexon
TCONS_00016637-exon-sc0000243-1510915933:404885..405166TCONS_00016637-exon-sc0000243-1510915933:404885..405166Clytia hemisphaericaexon
TCONS_00016637-exon-sc0000243-1575043694:404885..405166TCONS_00016637-exon-sc0000243-1575043694:404885..405166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:404885..405166 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74056	0.273511	2.51099	1.0672	14.9409	3.59329	0.619308	7.41494	2.22847	3.91494	4.88032	0.483197	2.24257	2.90632	1.24199	3.06948	5.17257	2.00187	3.48051	1.74051	3.94568	2.95293	1.36662	1.58647	1.55156	2.76945	1.32103	0	3.45993	2.37587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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