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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016647 ID=TCONS_00016647|Name=TCONS_00016647|organism=Clytia hemisphaerica|type=transcript|length=656bp
ccccccccccccctccctgGAAAGTGCTGGGGGCTGGACCTCTCTGCACA
ATATGTGATCCCTAAACTCTTATGCTCTGTTACTATATAACCAAAGAAAA
TCTGCAAGCCTTCTTCCTTATCAGTATTTTCTGTCTTTTAGCTTCTTGAG
AGGAAAGACGTTGCAGAACATGATAATTACCATCAATGAAAAGGCTTAGT
TTCATTGACAGCTGTTGTGGCGTTACATGTTCATTATTGACGTTGTGGAA
catttcaaagaaaacaaatgCTTTGACGCAACCAGATGGATAGTATGAGC
GGTGGTTcaaataatgaaaactttttgctcGAAGAAAAATGCTTATTTCA
AGtATCATTGCCCAATATGACACCGATTGACGTCCTAACGAGACAAAAAA
TATACCTGCGTATCGCGTCGGAGCATATCCCGAACAACCTTACAAGTTAT
CTTTGtacttaatttttcatttttttaacaacaaTGAAATTATATGGTCG
AAGACTTAATCTTCTTTGCCTTTATTTGTATTGTTCAGAGTCATGGTTTT
GTCCATGATTTTTAGTCCCTCTCAAAACACGAATCACCTCTCTTTGATAT
AGGGAATGctaatcgtgtataaaattcgcCTCCGAGAGTTACCCTGAATT
TGGATT Run BLAST on NCBI transcript from alignment at sc0000246:53945..55863+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016647 ID=TCONS_00016647|Name=TCONS_00016647|organism=Clytia hemisphaerica|type=transcript|length=1919bp|location=Sequence derived from alignment at sc0000246:53945..55863+ (Clytia hemisphaerica)
ccccccccccccctccctgGAAAGTGCTGGGGGCTGGACCTCTCTGCACA
ATATGTGATCCCTAAACTCTTATGCTCTGTTACTATATAACCAAAGAAAA
TCTGCAAGCCTTCTTCCTTATCAGTATTTTCTGTCTTTTAGCTTCTTGAG
AGGAAAGACGTTGCAGAACATGATAATTACCATCAATGAAAAGGCTTAGT
TTCATTGACAGCTGTTGTGGCGTTACATGTAagattttaatataattttt
caacaCTCAATAGTAAAAATTCTCTCTGAATAAGCTTTAACCGCAGGTAG
GTAGGTGGATATATCACTCATTTCGAGGTAGTACTTATTGAATTTTGGTA
TTTGGTAGGTAAAATGGGGggaaattttgccaattttctgAAGAATTCCT
GAAAACAATCGGGTTTCacttatcaaatattttttaattttcatacacgc
ttttttatataagaatagtgtactttggatgagggttaagtattcttaag
aaagtgccaaaattgaggttgaaatattcttaatatattcttactttttt
agacttgactttttttcaaacatgagaaatgatcaatttgggagttttgg
acttttgagtgaacatttgggttaaaattacattttttccttgaagcttc
aatttatctctaacaaaggaaacagtttttctgttaaccaaatacaaaat
ggcTGTATTCTTATcgaattctgtgaaattcaccttAGAGAGGGtattag
ggtattcttacgatttggccaattttcaccctaatattcttatagaagat
attcttataaaaaaaagcgtgtattttatAAATGACGAATCGAATTGTTG
CAAAAAACTTTCCACATTTTAAGAAGCTCTTCCACATTTTTGAGAGGTAA
AATTGACTGATAGGTATTACGAGATATTTTTCCAGGGTTATGTAGCCGTA
TTTTCTCTGGTATTGGGCTTCTAATTAGGGAGTGGTTAGTACATAGGTAC
TAAAAAGAGGGTGGTGGTACCTAagaaaaatttttctgaaaatcaggGTT
AGTATCCTGCGGCTACACCCCCTCCCCTTCCACTCTGTTTACACTGCATT
GAAAATATTAGACCTTTTAGAAAATATCCATTCGAAAACTCTTGGAAAAT
CTCTGGTATCCTCATAACCCTGGTCGATTCCCATTCCAATCGTTTCTTTT
TATCGCTTTGACCAGCTAAGACTGAAATGTTAATGTAAGTCTCTTTCTTC
CAATGTAGGTTCATTATTGACGTTGTGGAAcatttcaaagaaaacaaatg
CTTTGACGCAACCAGATGGATAGTATGAGCGGTGGTTcaaataatgaaaa
ctttttgctcGAAGAAAAATGCTTATTTCAAGGTATgtatattataataa
tattttggagataaatatttcaataaataatttttaaaacttccaTATGC
ATTGTTAAAAAGGTAATGAAGTAAGTAAAGAGTGTATTGAAGTAGATGAG
ACTAAAGAATAAAACTAAAGTGGAATGAGACAGAAAATGTTGAAAAGGGC
TTGAAATTTACCTATTAATTTCTTGATGTTCAACTTTCcttatgttaatt
tttttctctctttagtATCATTGCCCAATATGACACCGATTGACGTCCTA
ACGAGACAAAAAATATACCTGCGTATCGCGTCGGAGCATATCCCGAACAA
CCTTACAAGTTATCTTTGtacttaatttttcatttttttaacaacaaTGA
AATTATATGGTCGAAGACTTAATCTTCTTTGCCTTTATTTGTATTGTTCA
GAGTCATGGTTTTGTCCATGATTTTTAGTCCCTCTCAAAACACGAATCAC
CTCTCTTTGATATAGGGAATGctaatcgtgtataaaattcgcCTCCGAGA
GTTACCCTGAATTTGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016647-exon-sc0000246-1491911889:53945..54172 | TCONS_00016647-exon-sc0000246-1491911889:53945..54172 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1510915933:53945..54172 | TCONS_00016647-exon-sc0000246-1510915933:53945..54172 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1575043694:53945..54172 | TCONS_00016647-exon-sc0000246-1575043694:53945..54172 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1491911889:55203..55326 | TCONS_00016647-exon-sc0000246-1491911889:55203..55326 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1510915933:55203..55326 | TCONS_00016647-exon-sc0000246-1510915933:55203..55326 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1575043694:55203..55326 | TCONS_00016647-exon-sc0000246-1575043694:55203..55326 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1491911889:55560..55863 | TCONS_00016647-exon-sc0000246-1491911889:55560..55863 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1510915933:55560..55863 | TCONS_00016647-exon-sc0000246-1510915933:55560..55863 | Clytia hemisphaerica | exon |
| TCONS_00016647-exon-sc0000246-1575043694:55560..55863 | TCONS_00016647-exon-sc0000246-1575043694:55560..55863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000246 | supercontig | sc0000246:53945..55863 + |
Blast
The following BLAST results are available for this feature:
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