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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016678 ID=TCONS_00016678|Name=TCONS_00016678|organism=Clytia hemisphaerica|type=transcript|length=3169bpRun BLAST on NCBI transcript from alignment at sc0000246:82953..95188- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016678 ID=TCONS_00016678|Name=TCONS_00016678|organism=Clytia hemisphaerica|type=transcript|length=12236bp|location=Sequence derived from alignment at sc0000246:82953..95188- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016678 vs. Swiss-Prot (Human)
Match: KIF15 (Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 8.783e-89 Identity = 269/843 (31.91%), Postives = 439/843 (52.08%), Query Frame = 2
Query: 2 EAGSINKSLSALGNVIMALVDIAHGKTRHVHYRDSKLTFILRDSLGGNAKTFIIANVHPSSRCFGETLSTLNFARRAKMIKNKAVMNEDVTGNVRELQQEIRKLKEMLSQARAGIPQEPKANXXXXXXXXXXXXXXXXXXKEENEGASHWKEMMLNAINEREQTEQEKLALQEKVQKLEDLCSKKEKFLQSTRMILKFRTEHISKLERTIKKN-GXXXXXXXXXXXXXXXXXNKILQASIDSHPEVKRFAIENLELRAEIKRLKSLDPSNGDFTKNMAEKHRYTL-HLERQLRDLMSTQTNDL-EKXXXXXXXXXXXXXXXVERMKMDIAHVQARVDTLQNELKESRENIQQKTEELVHERELMRKKEMESSANEAALRKTNNXXXXXXXXXXXXTAMERQSMSSLHIQTIKTLSTPKKFGTPRSTPKKTPQVSTPVHLAKRLKTEEKQGAKNEEDNKENVSSLNGSYVNDPDRPIQDEPPPRYILERKDSLXXXXXXXXXXXXXXXVFNESYLHNSHNQSVDAEAVYIDALQNEVKQLQDWYNDALKKYYNEQHKQIPLLENIAKLEHKVKDLDQLLTNERQEWSSKEVQLTNQLTALRDNYKETQGNATILKSEVDDLKSSLSSAESQLQTLKKEKNESNIESTRKYAALESKHVKLEIEYFNLQTENDETAERNNNLQVDYDQVQDECEY-----------YRHKNSELEHNLEAEKRMKLEAEEQKQIALEKLSYEYETKIKYSQDKESETLNELLEKNNTINKE-------LEEKAQKITSLTEDVEKARKELTTQKWLHIKDGQVINNFMKKVEDLNMALGDKDTNISALNSELEDV 2467
EAG+IN+SLS LG VI ALVD+ +GK RHV YRDSKLTF+LRDSLGGNAKT IIANVHP SRCFGETLSTLNFA+RAK+IKNKAV+NED GNV +LQ E+++LKE L++ +G Q P + T K++ +++E ML +++EQEK +L EKV +LEDL KKEKF+QS +MI+KFR + I +LE+ K++ G E+D+ + L++E + L+ I+ HP V ++A+EN LR E +RL+ L+P K E T+ LE+ ++ + +D ++ S Q A E++K + +Q ++ N +Q+ EE +EL RK+++E + +L+K N LE LE+ + E ++ +H +T+K ++TP K S P P++S + L T +N S L+ +N+P PP NE +A+ E++ +Q+ + K E+HK + L +++ KLEH + +L ++ER +W+ ++ +L +QL L +ETQ LKSEV DL+ L SA+ +L ++K E + +++ L +H+ ++++ NL+ EN++ E LQ YD +Q+ ++ ++ +N L+ +L + LEAE+++ KLS ++E +DKE+ + E+L+ + +E E++ K+ L E + K +++ + D +V+ + M ++++L ++ +K I L EL+D+
Sbjct: 284 EAGNINRSLSCLGQVITALVDVGNGKQRHVCYRDSKLTFLLRDSLGGNAKTAIIANVHPGSRCFGETLSTLNFAQRAKLIKNKAVVNEDTQGNVSQLQAEVKRLKEQLAELASG--QTPPES-------------FLTRDKKKTNYMEYFQEAMLFF----KKSEQEKKSLIEKVTQLEDLTLKKEKFIQSNKMIVKFREDQIIRLEKLHKESRGGFLPEEQDRLLSELRNEIQTLREQIEHHPRVAKYAMENHSLREENRRLRLLEP-----VKRAQEMDAQTIAKLEKAFSEISGMEKSDKNQQGFSPKAQKEPCLFANTEKLKAQLLQIQTELN-----------NSKQEYEEF---KELTRKRQLELESELQSLQKANLNLENLLEATKACKRQEVSQLNKIHAETLKIITTPTKAYQLHSRP--VPKLSPEMGSFGSLYT-------------QNSSILDNDILNEP-------VPPE-------------------------MNEQAF---------------EAISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHSTQMQELFSSERIDWTKQQEELLSQLNVLEKQLQETQTKNDFLKSEVHDLRVVLHSADKELSSVKLEYSSFKTNQEKEFNKLSERHMHVQLQLDNLRLENEKLLESKACLQDSYDNLQEIMKFEIDQLSRNLQNFKKENETLKSDLNNLMEL-LEAEKERN---NKLSLQFE------EDKENSS-KEILKVLEAVRQEKQKETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTETIDTLKQELKDI 1015 The following BLAST results are available for this feature:
BLAST of TCONS_00016678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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