TCONS_00016680 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016680
Unique Name	TCONS_00016680
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1168

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000246:89909..95188-

transcript sequence

>TCONS_00016680 ID=TCONS_00016680|Name=TCONS_00016680|organism=Clytia hemisphaerica|type=transcript|length=1168bp
GGAAGCTGGTAGTATCAATAAATCATTGTCAGCATTGGGGAATGTCATCA
TGGCACTGGTGGATATAGCGCATGGAAAGACCAGACACGTTCATTATAGA
GATTCCAAACTGACCTTCATTTTGAGAGATTCATTAGGAGGAAATGCTAA
GACGTTTATCATCGCCAACGTTCACCCTTCTTCAAGGTGCTTTGGTGAGA
CGCTTTCCACTCTGAATTTTGCACGGCGCGCCAAGATGATCAAAAACAAA
GCTGTTATGAACGAAGACGTCACGGGGAATGTTCGTGAACTTCAACAAGA
AATTCGTAAGCTGAAAGAGATGTTGTCTCAAGCAAGAGCCGGTATTCCAC
AAGAACCTAAGGCAAATCAAGACACACCAACACCTTCATCGTCAGACGAT
CACCAAACAACAACGTCATCGAAAGAAGAGAATGAGGGTGCTTCTCACTG
GAAAGAAATGATGTTGAACGCTATTAATGAACGTGAACAGACGGAACAAG
AAAAACTGGCGTTACAAGAGAAGGTGCAAAAGCTTGAAGACTTGTGCAGT
AAGAAAGAAAAATTCCTCCAATCCACGCGCATGATCTTGAAATTTCGGAC
AGAACACATCTCCAAACTTGAACGGACGATCAAGAAGAATGGCTTAAttg
aagaaagtgaaaaagacaaagaaattAAATCATTGAAAGACGAAAACAAG
ATATTGCAAGCCAGCATCGATAGTCATCCGGAAGTCAAACGATTCGCCAT
CGAAAACCTGGAACTCAGAGCGGAAATCAAAAGACTGAAGTCATTGGATC
CATCGAACGGAGATTTCACCAAAAACATGGCGGAGAAGCATCGATACACG
TTACATTTAGAACGTCAGCTACGCGATCTCATGTCCACTCAAACGAacga
tctcgagaaaagtttATCAAGCTCGCAACAAAGTTTGGAAGCATCTAACG
CAGAAGTTGAACGCATGAAAATGGACATTGCGCATGTGCAAGCTAGAGTG
GATACTTTGCAGAACGAATTGAAAGAATCACGTGAGAACATCCAACAGAA
GACGGAAGAACTTGTCCACGAGAGGGAACTGATGCGCAAGAAAGAAATGG
AATCTTCCGCAAACGAGGCTGCTCTCAGGAAAACTAATAATGAACTCGAG
AGACAATTGGAATCACTA

Run BLAST on NCBI

transcript from alignment at sc0000246:89909..95188-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016680 ID=TCONS_00016680|Name=TCONS_00016680|organism=Clytia hemisphaerica|type=transcript|length=5280bp|location=Sequence derived from alignment at sc0000246:89909..95188- (Clytia hemisphaerica)
GGAAGCTGGTAGTATCAATAAATCATTGTCAGCATTGGGGAATGTCATCA
TGGCACTGGTGGATATAGCGCATGGAAAGACCAGACACGTTCATTATAGA
GATTCCAAACTGACCTTCATTTTGAGAGTAAGTTGTGCATTGTTTCGTTT
TACAACTAAACATGTTTTTGTTTTATTATTTTTTTGTATACTTTTTTTTT
AAATCGTTCTTATAGTTCTTCATTGTAAGATTTTCTTGTTATATTGAAAA
CTTGAATTTGTAAAATACATAAGTTTGACTCTTAGAGTGCGGTCTGGCTG
TATAAAAAATTCCGCACGATATGAGTATGACAACATTGTACATAAATTAA
ATTTTACACATTTTAAACCTTAAAATTGTTTGATGAATGAAATTGATTTT
TTTGGAAAGCTGAATTTGTCACGACAGAAATGTAGCTATTTCAGTGTAGT
TTTTCATTCATTGTCCTTTTTTTCCAGGATTCATTAGGAGGAAATGCTAA
GACGTTTATCATCGCCAATGTTCATCCANCCAGGATTCATTAGGAGGAAA
TGCTAAGACGTTTATCATCGCCAACGTTCACCCTTCTTCAAGGTAACTAC
TTCACACCCTTACAGTTACAATTAATATAAACATTCTCCATTTTAGAGTT
CAGTAAGCTGGATACAGAAACGTACTCACATATCAAAATTAATCCACAAT
GGGCAAAGACTCTCTAAAAAGAGAGTAACGCCTCAATACCAACATCACAT
TTATTTTTCACACCCCTCTGTCACAGAACCGCTGGGACCCCCGCCCCACT
AGAAATTTTAAATTTAATGGAAGAAATTGCTCCCAAATCTCACTGGAATT
TTTGAGTTGGGAACAATAGAATTTTTATCCCCATCCCCCATTATTCTGTT
TTTTTTGGAAACCAATTAAATATGTGTGTCATCTCGTTTCTTTCTCGTCA
AACTCGAGCAGCAGGTTTCTTAATCTGATTGTCTTTAGTTTTATCAAGAT
ATTCATTCTTCTTGAATACGACGAAGAGAAGACGAACTGAAAACTTATTT
TTAAAAAACCTCATTTATAAAAAGTTAATATCTAAAAGCATAAGTTAGTG
TTTTTTAAACCGTTACTAGCATCCTCAACACCTACGGTTTTTATTATGAT
TATTTTATTTGTGGTATTTTTATGTGTGATACTCACTATAATGTGCAAAA
CTTTAGAAAAAAGAATTTAAAATCATCTAAAGAAACCATTCAAACGATTG
GTCCTGTATAGACAAACACATTTAAATAATTTGATAAACTTTTATTAGTT
CTATCTTGTACATTATATGAAAGTTGCTAATCCCAAGATTGAGAAAAGAA
TTTCTAAAAACCCTAAAAATTATAGCTTGCTTTTAAAACATGTCTCACAT
TCTAAGGATTGCGAGTCGTGTATTGATTGTATTGATGAACCTGTTTAATC
TACAGGTGCTTTGGTGAGACGCTTTCCACTCTGAATTTTGCACGGCGCGC
CAAGATGATCAAAAACAAAGCTGTTATGAACGAAGACGTCACGGGGAATG
TTCGTGAACTTCAACAAGAAATTCGTAAGCTGAAAGAGATGTTGTCTCAA
GCAAGAGGTAAAGTAAATTCTTATCCTTGTGAAGTCTCTACTCACTACTT
AAACTCGCATGGAGAACACAAATTTGTCGAGTTAAGGAAATTTCGAGTTA
TGGAGTAAGGTTTATAACGTATTGTTAACTGAAGGGAACAAAAAATTTTT
CGAGTTAAAGAGGCTTAATACTGTAATTTTATAGGGCTATTACGCTTTAC
GAGAGACTCTGAAATGGCAATAATTAGAGTGTCAATCTTGCCACACAGCC
TCATATTTTATGAAAAGCTACAGACGTAACGGTGTCTGGGAAAAAGCCCC
GATTATCGCGCTTACACGGTAGATATAAAGGCATTGTTCTATATGGTTTC
AAGAAAGCATGCCGCTTTTAACAGTTTTAACCGGGTGCGTATTAAACCCA
CTTACTTTTAACCTTAATTCATTCTATTCTTTTAGCCGGTATTCCACAAG
AACCTAAGGCAAATCAAGGTAAAAGATTTCTATTAATCTACGGTATGGAT
ATAAGATGGAAAGAATTCAGACTCGTTTTAACATTAATAACTTCACAGCG
TTGCGTATTTTCCAAATGATTGCTTTGATTTCCTGTTGTACTTTAATTTA
ACTGATAATCTCGGAATAATAGCTCAAGAGTGTCATGGAAACGGCTTGTA
TATCTAGATATTTTATTGGATCTTTCGAAAAATAAATCACATTAATTTAA
GTACATACTTGTTAAACACATTGCAGTGTTACGTATTAAAATGCTCTAAT
GTCGGCAACCCCCATATAAACCCGTCAGCATTCTTTAGAGATAAGAATAA
TAGGAAGGTCGAAAATATTTTTCCTTCCTGGCTGTGATTCTGACCTTGCT
TTTATTCCCTCTCTAAAAAGGGTGTCAGAACTAGAAGAGTGTTTTCGACA
TTAGACTGTCCATTTTCTACATTTCCCTTCTTCTTCACTTTATCAGACAC
ACCAACACCTTCATCGTCAGACGATCACCAAACAACAACGTCATCGAAAG
AAGAGAATGAGGGTGCTTCTCACTGGAAAGAAATGATGTTGAACGCTATT
AATGAACGTGAACAGACGGAACAAGAAAAACTGGTATGGAGTAAACACAG
AGTTTACGAATCTGTGTTTTTCAGCGGTTAGCTTTTGATTTGTCTAGATC
TTGACTGACTGAGGTGGACGGTAAATCAGCACTTTGCTGTTCTCGATTTT
ACGGGTAACAACTCGCTAATGTTGTCAATTGAACAAGGGGTTTTTGTAAC
ATTTACACAAAGCAAATTCCCATNTTACGGGTAACAACTCGCTAATGTTG
TCAATTGAACAAGGGGTTTTTGTAACATTTATACAAAGCAAATTCCCAAT
TACTATAAGAAAAACTCAGCAAAAACAAAGTAAAACCCTGGAAAATGGTT
AACCTTTGCTTTTACTTTCCACAGGCGTTACAAGAGAAGGTGCAAAAGCT
TGAAGACTTGTGCAGTAAGAAAGAAAAATTCCTCCAATCCACGCGCATGA
TCTTGAAATTTCGGACAGAACACATCTCCAAACTTGAACGGACGATCAAG
AAGAATGGCTTAATTGAAGAAAGTGAAAAAGACAAAGAAATTGTGAGTGA
TCCATTCATTTTCTTTATCTGAAGAAAAGACGTCCTTTTTTTTAAGTGTT
GTCTGGCTTCAATTCCGCCCTTTATGATTGTAATTTTACGATAACCATTT
TCATGCGTTGTCATTTTTTGCTAAGTATATTGAACGATTTTAAACTCTNT
TTACTTTCCACAGGCGTTACAAGAGAAGGTGCAAAAGCTTGAAGACTTGT
GCAGTAAGAAAGAAAAATTCCTCCAATCCACGCGCATGATCTTGAAATTT
CGGACAGAACACATCTCCAAACTTGAACGGACGATCAAGAAGAATGGCTT
AATTGAAGAAAGTGAAAAAGACAAAGAAATTGTGAGTGATCCATTCATTT
TCTTTATCTGGAGAAAAGACGTCCTTTTTTTTAAGTGTTGTTTGGCTTCA
ATTCCGCCCTTTATGATTGTAATTTTACGATAACCATTTTCATGCGTTGT
CATTTTTTGCTAAGTATATAATGAACGATTTTAAACTACACCTTCCATTT
CATTTTTGCCATCATTTTTGTCGAACTAGCATCGTTTTCGAAAGAAAGGG
CTGCGAGAAAAAAGTCCTTTTTACGTGCTTGGTAAGCTCAGAATAAGTTA
CATCTTTATCAGTAACATCAATGTAACGTCACTTTATGCTGTATTTTGCT
ACAAAAGTATTAAGGTCATGTTCCGTGTAGCTTTTTATGGTTGCCTAACT
ACATGCACGGTTTAATTATTACATAAATCAAATGAATTAAGGGTTTAAAG
CTCATTGGTTTTCAATATTTCTTGCACAGTAAAACTTGCAACTACATATT
AATTGATTTTATTACAGAAATCATTGAAAGACGAAAACAAGATATTGCAA
GCCAGCATCGATAGTCATCCGGAAGTCAAACGATTCGCCATCGAAAACCT
GGAACTCAGAGGTAATTCTGAGGAGTTAAAAATATTAAAGGTTTTGTTTT
TAAATACGATATCGTGATATCGTTTGCTTTGCTTACTCATCAATTTTTAT
TTACAAGCTTTTTGATATTGAATTGACACGGATGTGGAGCAAGATTGTTC
AGAAAGAGGGAAAAAATATTTTTTTGCTTATATCAACACAATATAAAAAT
ATGCAGACACTGTGCTGGTATGAAACATGTGTCTGATATGAAACGGGAAC
ACTTGTAAAAATAAAACCTTTAAATGTAATTTTGTCACAAACCTCACAAC
TTGCGTAAGAACTAATTAATCTATTTGAAACTTGTCAAAATTGTAATTCA
AATAAAGGTACTATAATTGTTGGAAAGCTTACTCGTGAATATGTAATCAT
AAAAAACTGCGCTTTTGTCGTATTCTTATCTAATTTTCTGAAAACTCATT
TTCAGCGGAAATCAAAAGACTGAAGTCATTGGATCCATCGAACGGAGATT
TCACCAAAAACATGGCGGAGAAGCATCGATACACGTTACATTTAGAACGT
CAGCTACGCGATCTCATGTCCACTCAAACGAACGATCTCGAGAAAAGTTT
ATCAAGCTCGCAACAAAGTTTGGAAGCATCTAACGCAGAAGTTGAACGCA
TGAAAATGGACATTGCGCATGTGCAAGCTAGAGTGGATACTTTGCAGAAC
GAATTGAAAGAATCACGTGAGAACATCCAACAGAAGACGGAAGAACTTGT
CCACGAGAGGGAACTGATGCGCAAGAAAGAAATGGAATCTTCCGCAAACG
AGGCTGCTCTCAGGAAAACTAATAATGAACTCGAGGTATTAATTAAAACA
GTAGAAGTAACACTACCGAAACTTTGGTACCGCGGAGGCTCAACAACTCG
AAGAAGGCTACAAACCCTCGTAAACCTCATTCCCCTTGCACGTGCATATT
TGATTTATAGAGACTACTGCAAATAGTATTCTTTAATGTTACTTTACTCT
TTTCCTGAGTCTAATATCTTACTGTTTACTGAAAACTCGAAACATTATCA
AGACCAGACAAAAACTGACCGAAGCGCTCTACTGCTAGTAAGTTTTATAC
TGAATTTTTTGGCAGCTTTCAAAGGTTTTTATTTTATTAATTTTTTCTTC
TATCTTTTTCAGAGACAATTGGAATCACTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009321	XLOC_009321	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000246	supercontig	sc0000246:89909..95188 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0711713	0.0191468	0	0	0	5.39823e-06	0	0	0.227596	0	0	0	0	0.00870926	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00016680 vs. Swiss-Prot (Human)
Match: KIF15 (Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.855e-70
Identity = 167/391 (42.71%), Postives = 239/391 (61.13%), Query Frame = 2

Query:    2 EAGSINKSLSALGNVIMALVDIAHGKTRHVHYRDSKLTFILRDSLGGNAKTFIIANVHPSSRCFGETLSTLNFARRAKMIKNKAVMNEDVTGNVRELQQEIRKLKEMLSQARAGIPQEPKANXXXXXXXXXXXXXXXXXXKEENEGASHWKEMMLNAINEREQTEQEKLALQEKVQKLEDLCSKKEKFLQSTRMILKFRTEHISKLERTIKKN-GXXXXXXXXXXXXXXXXXNKILQASIDSHPEVKRFAIENLELRAEIKRLKSLDPSNGDFTKNMAEKHRYTL-HLERQLRDLMSTQTNDL-EKXXXXXXXXXXXXXXXVERMKMDIAHVQARVDTLQNELKESRENIQQKTEELVHERELMRKKEMESSANEAALRKTNNELERQLES 1165
            EAG+IN+SLS LG VI ALVD+ +GK RHV YRDSKLTF+LRDSLGGNAKT IIANVHP SRCFGETLSTLNFA+RAK+IKNKAV+NED  GNV +LQ E+++LKE L++  +G  Q P  +               T  K++     +++E ML      +++EQEK +L EKV +LEDL  KKEKF+QS +MI+KFR + I +LE+  K++ G     E+D+ +  L++E + L+  I+ HP V ++A+EN  LR E +RL+ L+P      K   E    T+  LE+   ++   + +D  ++  S   Q      A  E++K  +  +Q  ++           N +Q+ EE    +EL RK+++E  +   +L+K N  LE  LE+
Sbjct:  284 EAGNINRSLSCLGQVITALVDVGNGKQRHVCYRDSKLTFLLRDSLGGNAKTAIIANVHPGSRCFGETLSTLNFAQRAKLIKNKAVVNEDTQGNVSQLQAEVKRLKEQLAELASG--QTPPES-------------FLTRDKKKTNYMEYFQEAMLFF----KKSEQEKKSLIEKVTQLEDLTLKKEKFIQSNKMIVKFREDQIIRLEKLHKESRGGFLPEEQDRLLSELRNEIQTLREQIEHHPRVAKYAMENHSLREENRRLRLLEP-----VKRAQEMDAQTIAKLEKAFSEISGMEKSDKNQQGFSPKAQKEPCLFANTEKLKAQLLQIQTELN-----------NSKQEYEEF---KELTRKRQLELESELQSLQKANLNLENLLEA 636

The following BLAST results are available for this feature:

BLAST of TCONS_00016680 vs. Swiss-Prot (Human)

BLAST of TCONS_00016680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KIF15	5.855e-70	42.71	Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF1...	[more]

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TCONS_00016680 (transcript) - C. hemisphaerica