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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016681 ID=TCONS_00016681|Name=TCONS_00016681|organism=Clytia hemisphaerica|type=transcript|length=680bp GAAAATTATCGGAAATGAGTGATCAACGCATGCGCTAAATATGTAAACAA AGCTGAGTTGCGCGCTTTCTTGAAattctacaaaaaaaaacatggcaTAT TTCTGTTGTTGTACACGAAAGATTACAAAAATTTCGTTGTAATTATAATG TTTACCTTTGGGGATTAGCAAATATAAACATGGAAGTTCAAGCAAGACCA AGAGGGAAATCTTCCAGCTCCAGAAATCCTTCTGTAAATGagaGCTCCCT GAATTCAACTTTGGCTGGTGGCTATGATAGtaATGAAGGTGATAACATCA AAGTCTTTGTTCGAATCAGACCTCCCCACAAACAAATACATGAAGGTGGT GATAACAATGTTTGTTTGGAAGTCAACTCACCAAAATCTCTGACCATCTT CACCAAACCCGAACCAAAACAATTCAGTTACGACCATGTGGCAAATATGG AGACCACCCAAGAGGAAGTCTTTGCCACTGTTGGTAAAGGTATCATGGAA GCTTTCATTGATGGATTCAATGGTACTATCTTTGCTTATGGTCAAACAGG CAGTGGAAAGACTTTCACTATGCTAGgacctccagatGATGGTGACAACT TTTCACATGAGTTGCGTGGAGTTATCCCAAGAGGGTTCGAATATATTTTC AGTCTCATCAACAGACAACAAGAAAAAGTA Run BLAST on NCBI transcript from alignment at sc0000246:98788..107085- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016681 ID=TCONS_00016681|Name=TCONS_00016681|organism=Clytia hemisphaerica|type=transcript|length=8298bp|location=Sequence derived from alignment at sc0000246:98788..107085- (Clytia hemisphaerica) GAAAATTATCGGAAATGAGTGATCAACGCATGCGCTAAATATGTAAACAA
AGCTGAGTTGCGCGCTTTCTTGAAATTCTACAAAAAAAAACATGGCATAT
TTCTGTTGTTGTACACGAAAGATTACAAAAATTTCGTTGTAATTATAATG
TTTACCTTTGGGGATTAGCAAATATAAACATGGAAGTTCAAGCAAGACCA
AGAGGGAAATCTTCCAGCTCCAGAAATCCTTCTGTAAATGGTAATAATAT
ATTTACGTTCAGTTGTTTCTTTTTAAAGAAAAGTGATAAAAAGATATTCA
GAATCAAATATTTATAGTTGACAAGGACAACTTTTGATTAATAAATCCAT
CCATGGTAAATCATCAAACAAAAAAGTGCACACTTCACTATCTACTTTAC
CATTAAGGGAACAAAGATCTGGATCAAAACTGATAACATCAATAAAAATA
CACCTTTTCCTCTATACCGTCAATTGCTCTAACTTGGGATGGACTATCTG
ACAAAACATGGGACGGCAATTTGGCCACCATTTCACTGAACCTCCAAAGT
CATTTGATTTGAGTTAATGAACGGCATATTAAAAAAATACACAATTTCTC
TTTCGAACTGAGTAGGGTTTTTAATCGAAATATGAAAAAAATCCGTAGGT
AGTGGAACACACGCAAATGTCTGGAACGAAGAAGACCAAATAGTGGCAAA
ATGATGGAGCATTTGACATCACTCGTGCAGCAAGTTACACACTCGTTATT
TGTTAATCCCATCGGGCGACAGGCGGTTAGGCGACAGGCGTTCTCTAATT
CTCCAATCAGTGTCCGGTCATTTTGAATGAAAATAAAAAAGTTAAAAAGG
GCGCGCTATCAGTGAAAGTTATCATGACATGTTATGACAGAAAGCATGAT
TGATAAACTTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGATTTA
ACAGTAAGTGAAAATACAGGCCAGATATCAATCCCATGTTTCGACCAATC
GTCCCAAGTTAGAGCAGTTGACGGTAATGTCCAGTTTGAATTCCAAAAAA
CAGAACTTGAATGAAACGAGTCCAATTTTCTATTTCTCTTTTTTGGGAGC
CCCCTCCGATGAGCGGAACCAAATTATACGCATTCACACATTTTTTTTGA
AATTGACACATTCACACAAAATTAAATCTTTCACGAGTTTCATGCATAAA
AACCTCATTTTTTTTAAATATCGGGGAAACATTTTATCAGGCAGCTTGAC
ACACACTTGTATTTTTGTGTCCATAAACTCAGCATAAACAGTACAAATGA
ACCAACATTTCTACAAAAGAGACCATGACAAATGAAATTTCACTGCCAGA
CTAGTGCGCCCTTTTTTAATCTTTTTGTTCTCCTTCAAATGGCCAATGTT
ATCGATTGGAGAATTATAGAGCCCCCGTCCCCCCAGTCTGGAAAGAAGGC
AATATCTACACCAGAGTTTTCTTGGTGTAGCCTTGGAATAAGCCTATGAA
ATCCATGGTCTACGCTGGTCATTAAAATACAAACAGGCTAACTCTAAAGC
TCTAAAACAGCATCTAGTAACATGAAAACCAGAATATGATTCTTCAATGG
GAATCAACAATATGTCCCATCTAACAGAATTAATAATGGCACTGTCATCA
TTGACGTAACAAAACAAAGGATTTTCTTTCAAGAGCGTTGTAAACACTCC
AACAACTTCCATCGAAATGATCTGTCACAGTTAAGTCTACCATTTTAGTG
AGGTCCAAGGATTAAGCTGAGACCTCCCACAAAACGCCTGCAAGCTCCCA
CGCGAGTGAAAAACTTTTTTAATCTGTCAATCATTTTCTCAAGTGAAGAG
TACGATAGGATACAAAGTCATAAAACCTGAACTAGAAGACCTATGACCCT
AAAATTTTGCACAAGTACTCTTAATAAGATTTTATTAAAGTCAGAAAGTT
TCAAGTCGTTTAAAAAATCTTTCTCTAAGATATACGAAATAACTCCAGCG
TGGTAGATTCTGCCCCCCCCTCCTGGGGCTAATAAGGTTAATTCTTTGTT
AGAATACAATTGCTATTTATAAGAACAAAGGAAATTTTCGATTTTTGCTC
TTTGAACATGATGAGAAACGTCATCACAAACATTTTTTGTCAAAAGTTAC
ATTATATGACAAGAATCTTGTGTACCAAATTTTATACAAAAAGACCCACT
AGATCAAAAGTTAATGGGTGGTACAGGAACAGCCCCCCCTCGTTTTGAAC
CATCCCTAAAAGCCAAGTATGAGTAGGGTTATATAAAATTTACTGTAAAT
AAGTAAGGTTTCCTGTATATCGTCGCATCAAAATAAAAAAGCTTTAAGTA
CATTTTTTTGAAAATTGAGTTATGACCATACCGATGCTTTACACCCCATT
TTTACCATCTTTTTGGCTTAAATCCATCAAAAACCAACCTAAAGTGGCTT
AATTTTAAGCTTTTAGAAAAATGAGAATTTTACTTTTCACTTAATTTTCA
GGGTAAAAAAGCCTTAAGTCACATCAGTTTAGGGCAAAAAAGCCTTATAA
CCAGTGTGGAAACAATTAGGCCGACCCTAAAAATTTTTTCGTTTCCGGTC
CACCGGGTAACGAAAAAAAAAGTCATGCAGGCGTCCGGGAAGATTTTTTT
TTTGGTACTTTTCATGATTTCTAATAAAAGAAATTAGAAGGAAAAAAATC
ATCTCTCTGGCTGTTAGTGTTGCTCCACATTCTGTCTTTATATTTTTTCT
TTCTTTCACTGAAAGNNNNNNNNNNNNNNNNNNNNNAGTGTTGCCCCACA
TTCTGTCTTTATATTTTTTCTTTCTTTCACTGAAAGAAATGTGTTGCTAT
TAATTACAAAAAGCTGTACTTTGTGATTTTTTTTCTTCTAAGAATCAACA
AACTTTTCATTCTAATAAATTGATTTAATATGCATAACACTATTTATTTG
ATCTTTAACGTCCAGAAAGCATGCTAAATAAACAAACTTTTTGAAGAATG
TTATATAGGAACGATGTAACAGTTTGAAGAGTCATGAGTAAAGGTTTTTA
AGAAGAAAGTTTCATCTCTTATGTATTTGGTTCTTATGAAGAAAAAAATG
CGGCCGGGTGACGACGAAAAAAAATTTCACCCAGCCGGTGAACCGGAAAC
TTTTTTTCTTTTAGGGTCAGCCTTATGGACCCAAGGCTTTTTAACACAAA
AATATTTCAAATGTTAATGGTTTTTCAGGATTTAAGGAAAAATAATTTAA
AGTCGATTTTCTCAAAACAACAAAAATGGACTTAAAGCTTTTTCATTTTG
ATGCGGCGATATTATATCAAATTTAGATCAACGTTTGGCCCAGAGAGGCT
AAATTCATGGAAATTTTTTAGTTTCTATAGCAACTACCCCAGATATATTT
ATATCTTATAAGCTTATATAAGCTTTAAATTTTAGAAAAAAAATTTAATA
CCTCAACATACAAAGCTCTTGGAAAATGAACTTGCCAAAAAAAGTCTTGT
TTCTGGAAAGGCTGGTGACGAAAAGTAACTCGTTTGGCTGGGCACAAAAT
ATCTTTTTACATTTTTAGATTTTCCTTTTTCTTTATTTTTCTGTATGTTT
TGCTTGGTTTGTGTATTCTTTTCATATTTTTGTGTATCATCACTAGCAAG
TAGAGGATTGCCCAATTTTGTTGAGAAATTTATCTATGTCATGCCCAATT
TTGTTGAGAAATTTATCTATGTCATGTAAATTGGACCTTTGGGCTTTTTC
ATTGTGAGTGCATGCATGCGGACTGCATTCTGATTTGAGAATACAAATAA
TTTTAAAACCTATTTTTGACACTGAAAATTTTTGACTTTTCATGTAATCT
TATTGGCATTTTATACATGCGTAAACCGTAAACCGTAATTTTACAATTAT
ACACCAAATAGATCAGGTTTTATGACCTTTTTGTGCAGGCATTATAAAGT
CCAGCTAAAGCCCTGTACAATTCCAAAATCTTTCTTACTTACTTAAAGAT
ATTCTTTTCGATATTGTTCAACTTTAATAGCAATTCTAGTTGAGACCTTT
TTTACTGGTCAGCGGTAATTGTGAAACTTTGCAATGACGTCATCACCCTA
GATTTTTTCTATGTATTCCTTTTATGGTAGTCATTATATTGTCATAAACA
TCATCACACCCACTGCAATTTTCAGACATACTAGAGTTTGTAATGGAAAG
TTTTCAAAGTTTGCGAAAGTGTTATTTGATGAATTTAAAAACTTTTGGAA
GAGTGAGGCAACAATTTTAAGCCGCATGGTTACCTTTAGCAAAAATATAT
ATTGATATTCAACTTTGAGGGTTGCCATAGTAACTAGGAAATTTGATACC
AGTGGAAAGAACTCAAATCTTTGATGAATTTAGATGTGTAAAACTAATCT
TGACAATAATCCAGTCAAAAGTTTTAGCATATCTTAGCTTTAGGTTGGAA
GGGCTTAACAATGACATCATTAAAATAAATTTTGACTGAATTAATTATGG
GTGATGGCTAAAAAACGATTGATCGTTCCATTAATCAAAATTTTTTTAAA
GCAAAATTTTCACTTTCATGTTTCATTTTTCCCACATTATTATTTTACCA
CAACTTGCTATTTGAAATTAAAAACCTCTTAATTTATGAAATATAAAGTA
TTTGACTCAACCCATCAAAACATTTTCCTAAATTGAAATTGTAGGTTAGA
ATGATAAGCAGATATTCAATAGGTAAAAGTTGGTTATTGAGATTTATTAA
TCCGAGGTGAGGTAATGTGCAACGAGACGAAGCCGAGTTGAATATTTGTC
ACAGAGGGTTAATAAATCCAATAACCAACGTAAACCTATTGAATATAGTT
AATAGAAATAGCTAATAGGTCATAAAAACCATCAATCAAAATAAACAATA
TGATAAAAAAAGATTGAAATTTACATAAATGATGGGTGTTTGAAGTAAGA
TTGGCATCAATTAGTACAGTATATGGTCTCTAAAATGTAGGTTTGTATAT
TAAGCAGATATTCAATAGGTAAAAGTTTGTTATTGAGATTTATTAACCCG
AGTTAATGTAATGTGCAACGAGACGAAGCCGAGTTGAATATTTGTCACAG
AGGGTTAATAAATCCAATAACCAACGTAAACCTATTGAATATAGCTAATA
GAAATAGCTAATAGGTCATAAAAACCATCAATCAAAATAAACAATATGAT
AAAAAAAGATTGAAATTTACATAAATGATGGGTGTTTGAAGTAAGATTGG
CATCAATTAGTACAGTATATGGTCTCTAAAATGTAGGTTTGTATGCTTTT
AAGCAGATATTCAATAGGTAAAAGTTTATTATTGAGATTTATTAACCCGA
GGTAATGTAATATACTGTTTTATATGTACAATGGCAGTTACAAGATATAG
TCAAAATTTCTGATGGAGAAAGCTTCTTTTGTTATTATTCCTCTTATGGA
AATATTACTCCTCATAGAACTTTTGAGTGCCTTCTGTAACTTTTGTTGAT
GGACAAAGATGAATTAAGGTTAGGGGAACCCAACTGTATAATTGAATATT
TATCTATAGTAATGTTGATAATTATTATCGTGTATGCTTCTCAATCAACA
TTTTGATACACTTTAAGTTACTTCTGAAAAAATTCTTCACTTTTTTCTTT
TTTTGTTTGTTTTCACTTGAAGATGAAAAAACTTTATTATTAGAAATCTT
TTATTGCATTATTGGCTTATATTTACACTTTTTTCAAACATCAATTATTG
AATGAAACTTAAAATAGCAATCAGTTCTTTTATTTTTAGTTTTGAACAAA
TCTATGTGTTTTAGTTGTACCTTCTCATATTTTAATCTCTTTACTCTTTC
CTTTAAAAGGATTTGTATATTTTAATGGATTTTTATGAGGTTTTATCATT
TAAAGTGATCCTACTAAGAATTTGATGAAATGGAAATGTTTTGAAAAACT
TTTAGTAGAAATTTCAAATAATTTTTTTGATGAAGGAGACACTTTTTAGC
TGAAAATATGCTCAGAAAACAAGTTATGAAAAAAAGTAATGTATTCTCAA
CTTTGGTTGAGCTAGAATCTGAGAATGTCTGTCTGTCTGTCTGTCCATCT
GTGTGTGTATGTCCCTAATACTTCGGGGCAGCCTAGAGACAACCTTCTGC
TTATTGTAGATTTTATTTTAACCCTTTCATTCCCACGCGACCGCACTGCG
GTCCCTTTGGACCCGTCGTTTTTTCCCAGAGGACTGCATAGCGGTCCCTG
ATTTATTTTTTAAATTGTGATGTTTTGGCGGGAAATAAAGAGATGTCTTT
AAACTGCTTTCAAAGCAGATAAGATAGCGCGTCGTGTGCAAAAGACCGCG
TAAAAAAAGCTTGTTCGAGTAAAAAGTTTTGTTTACAAAAGTATTTACAA
AAATTTTTGCAAGCAAAATCTGTAAGGCCGAAAATGGGATTTTTTACAAC
CTCTATCAATCATTATGATTTTTCTATGAGGGCTAATCAAACAATTCTTT
TTTCAGTTAGTAGATACTGTTGTGCTAAACATTTATCAGAAGAATGAATG
GATTTAAATCATTTTTTCATAAAAAAAGTTACCATTGAATTGCAAAAAAA
TGCTGTTTTCAAATTTATTGTTGCCTTTCTCTGGTTACGTGACACGCTGA
TGACGTCATTTTGCAAATTTTTTACTATCAAAATGATCCTCATACTATTA
GTGAAAAAGGGTGAAAACTTTAGAGGACTAGGTTTAGTGATTCTNTATGA
AAAAAAGTAATGTATTCTCAACTTTGGTTGAGCTAGAATCTGAGAATGTC
TGTCTGTCTGTCTGTCCATCTGTGTGTGTATGTCCCTAATACTTCGGGGC
AGCCTAGAGACAACCTTCTGCTTATTGTAGATTTTATTTTAAGGGCTTAT
TCATTTCATAGGGTTTATGTCTTTGCTCTGATTTTTTCAAATTTTCTTGA
ACCCTTTGTTATTCTATTTATTCTATAGTATTTCTTGAATGAGTTTTTTT
TTAGCATTAATGTTCTTAAATGATGATAGTGAAATTGCTACCATTGTTAT
AATCATTTTTTTTTAATTTTCAGAGAGCTCCCTGAATTCAACTTTGGCTG
GTGGCTATGATAGGTAAAACCAAACTTTTTAACTTATATTTTTTGCCTAG
TATAATAGAATCTTGCTCTATGTAAGACATCATTTCTGCTTTGGGTTTTA
TTGCTCTCCATAATGATTTTGTCTTTTAATCCTAGTTTACTTCAAATATA
GTAGGGGCCAACCCTCCAACTCTTAGGATCTGTAATTATTCCGAAGGCAG
ACAGGATTTTGAGGCTTTTTTAGGCCCAATTTTTGGGAGTTTTGTCTTTA
AACGTCCCATGAAAGATGCTACCGAATGAAGTTGAAGTCAAACTCATTTT
TATTTCAATTTTATTTAGTAATGAAGGTGATAACATCAAAGTCTTTGTTC
GAATCAGACCTCCCCACAAACAAATACATGAAGGTGGTGATAACAATGTT
TGTTTGGAAGTCAACTCACCAAAATCTCTGACCATCTTCACCAAACCCGA
ACCAAAACAATTCAGTTACGACCATGTGGCAAATATGGAGACCACCCAAG
AGGAAGTCTTTGCCACTGTTGGTAAAGGTATCATGGAAGCTTTCATTGAT
GGATTCAATGGTACTATCTTTGCTTAGTAAGTACCTAATCTGATGTTTTA
TTTTGATCAGATGAATAGTGTATGTGTGATTCTTCCAGGGAGTTTTTTTA
AATGATAAAGTATGTAACAGTTAGCAACTAAAGCTATAAAATCAAGTTCA
AGGTTTAACCTTCTCTTTTCTTCATTAGTACCACCATAAAGTAATCTGAA
TTATTATTTTTAGCAGATCCTACCATTATTTCTCTAACTATAAACTCTCT
TTTTTTTAGTGGTCAAACAGGCAGTGGAAAGACTTTCACTATGCTAGGTA
AGTCTCAACTAATGGAAATGTTCAAGAATGTATCATTTTAGATATATAAT
ACACACAAGACCATCAATTAGGGGTTTTTGACACAGTGTATTATGTCCTT
ATTGGTATCAACTTTTTGCGTGGTCATCTTTTGAGGATTTACAAGGAAAA
TTCTTTTAATTTCGAAAACACAAGGAGCGCCCGGTCTCTTCAAAAGATGT
AAATGCTGATGATTTAAAATATATTTCCTTTTGTCTGTTTATAGGACCTC
CAGATGATGGTGACAACTTTTCACATGAGTTGCGTGGAGTTATCCCAAGA
GGGTTCGAATATATTTTCAGTCTCATCAACAGACAACAAGAAAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00016681-exon-sc0000246-1575043694:106846..107085 | TCONS_00016681-exon-sc0000246-1575043694:106846..107085 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1575043694:99973..100012 | TCONS_00016681-exon-sc0000246-1575043694:99973..100012 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1575043694:99410..99667 | TCONS_00016681-exon-sc0000246-1575043694:99410..99667 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1575043694:99139..99176 | TCONS_00016681-exon-sc0000246-1575043694:99139..99176 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1575043694:98788..98891 | TCONS_00016681-exon-sc0000246-1575043694:98788..98891 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1510915933:106846..107085 | TCONS_00016681-exon-sc0000246-1510915933:106846..107085 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1510915933:99973..100012 | TCONS_00016681-exon-sc0000246-1510915933:99973..100012 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1510915933:99410..99667 | TCONS_00016681-exon-sc0000246-1510915933:99410..99667 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1510915933:99139..99176 | TCONS_00016681-exon-sc0000246-1510915933:99139..99176 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1510915933:98788..98891 | TCONS_00016681-exon-sc0000246-1510915933:98788..98891 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1491911889:106846..107085 | TCONS_00016681-exon-sc0000246-1491911889:106846..107085 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1491911889:99973..100012 | TCONS_00016681-exon-sc0000246-1491911889:99973..100012 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1491911889:99410..99667 | TCONS_00016681-exon-sc0000246-1491911889:99410..99667 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1491911889:99139..99176 | TCONS_00016681-exon-sc0000246-1491911889:99139..99176 | Clytia hemisphaerica | exon |
TCONS_00016681-exon-sc0000246-1491911889:98788..98891 | TCONS_00016681-exon-sc0000246-1491911889:98788..98891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000246 | supercontig | sc0000246:98788..107085 - |
Blast
BLAST of TCONS_00016681 vs. Swiss-Prot (Human)
Match: KIF15 (Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.104e-51 Identity = 87/134 (64.93%), Postives = 108/134 (80.60%), Query Frame = 3
Query: 279 SNEGDNIKVFVRIRPPHKQIHEG-GDNNVCLEVNSPKSLTIFTKPEPKQFSYDHVANMETTQEEVFATVGKGIMEAFIDGFNGTIFAYGQTGSGKTFTMLGPPDDGDNFSHELRGVIPRGFEYIFSLINRQQEK 677
SNEGD IKVFVRIRPP ++ G+ N+CL V S SL + + PEPK F++DHVA+++TTQE VFATV K I+E+ + G+NGTIFAYGQTGSGKTFTM+G P + DNFSH LRGVIPR FEY+FSLI+R++EK
Sbjct: 21 SNEGDAIKVFVRIRPPAERSGSADGEQNLCLSVLSSTSLRLHSNPEPKTFTFDHVADVDTTQESVFATVAKSIVESCMSGYNGTIFAYGQTGSGKTFTMMG-PSESDNFSHNLRGVIPRSFEYLFSLIDREKEK 153
The following BLAST results are available for this feature:
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