TCONS_00016683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016683
Unique NameTCONS_00016683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2970

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016683 ID=TCONS_00016683|Name=TCONS_00016683|organism=Clytia hemisphaerica|type=transcript|length=2970bp
GAAAAATCGAATAGAGTAAGAGTAATCTTCCCGAAATATTCATATGAACT
AAATAGATAAACAAACAGTGATATTATGGGAAAGAAGAAGGACAAAGGCT
CAGGCCTGATGAATTTAGCCTCTGTTTTGAGCGAAGCGTCAAAGAAACCA
TACTTGGAACAACATACAGATCACGTGACAGGTGGTGGCTACCCAATGTC
ACCCAATATTTTGAGCGGTGGAACGGAAACCACTGGCTCCACTTCTGGGG
ATTTTAATATGTCCCTTGATGATGAAGATCAGTACCCTGGAGACGTGTGC
CACAAACACCGAAAAATGTCCAAAGCGTCAGGCGTAGGAAGCTCACGAGA
GAAATGGCCACGTCGATCAGAGTTTCTCTTGATGTTGTTTGGTTATACCG
TGGGTCTTGGAAATGTGTGGAGATTTCCTtacctgtgtcataagaatggT
GGAGCTTCCTTTCTCATCCCCTACTTTATTATACTGGCTGTAGAAGGGAT
GCCGCTCTATTACATGGAGTTATGTCTCGGTCAACGGCTAAGGAACGGAT
CAGTTGGTGTCTGGCATCTAGTTTCTCCTTACTTGGATGGTTTAGGATTT
GCATCTGTGGTGATTTGTATCATGGTCTGTTTATATTATAATGTGATTTT
ATCATGGTGTTTGATTTATTTCGTCAACTCTTTCAAGAATCCTTTACCAT
GGTCAGAATGCCCGAAAGTCACCATCACCAAAGGAAATCAGACCTTCCAA
AAGCCAAATGCTGAATGTGAGAAGGCAGGGCCGACCAGTTATTTCTGGTA
TCGCACAACACTTGATATCTCTGAAGATATCGAATCTGGTAATGAAATCA
ATTGGACAATCGCGTTCAGTTTGTTGTTCGCTTGGTTGGTCGTTTGGCTT
TGTATGGTGAAACGAATCAAGTCGGAGGGCAAGgtAGTGTACGTGACTGC
AACATTACCCTTGATCTTGCTTGGTGCAATGTTCTTCCGTGGCGTCAATT
TGGACGGCTTCCAACAAGGACTTGCCCTTCTTTTCGTTCCTGAATTCTCA
AGATTGAAAGATCCTTTAGTCTGGTTAGACGCTGCCACACAAACATTCTA
CTCTCTCGGTATCGCATATGGATCTCTGATCGCATTTGCAAGCTACAACC
CGCTAAAGAATGACACAACCAGAGATGCTATCACCATCTGCCTCATAGAT
GCTGGAGTCAGTGTCTATGCCAGCGTTGTTATATTTTGTTTCATTGGGTA
TCGTGCTGAGTTGAAAATGCACGATTGTCTCGCCATGTTGGGGCTGAACC
ATACAGAGTCGGAATCGTACGAAATCTTCGTAGGGAATGCAACAGTGAAC
GGAAATATAACTGAAATCGTATGTAGTAAAAAGGAATTCCTTGCAGAGCT
TTCACAATCGACTGGTCTTGCCTTCATCACCTTCACCGATGCCATCAACA
CGTTGCCACAAGCTCAAATGTGGTCCATATTGTTCTTCCTGATGCTTCTG
ATGCTAGGTGTAGACACACAGTTCGGAATGTTGGAAGGGCTATTCACGCC
GCTCTTTGATGCGAACCCGTTTCCAAAACTGAGGAAAGAAATTGTGACAG
GAATCGTCTGTCTTGCTATTTACTTACCAAGTTTAATCATGACACAGCAT
TCTGGTAACTATTGGTTACAGATCATTGAGAATTATTCGGTTGGAATTCC
GTTGCTGGTGGTAGCGTTGTGTGAAGTCATCTCCATATCATATCTGTATG
GCATAGAAAGGTTTTGTAATGACATTGAGTACATGACGAACAAACGACCG
AACAAAATTTGGGTGATATGTTGGAAAATTATTTCACCAGCCCTCATTGT
TTTTGTGCTCATCTTCAGCATAAAAGACCTCTGCACCAAATCACCTACCT
ATCAAGTGTGGGTAGCACATATGGCAGAAGGGAAATACGTTGAGCTTCCA
CCCTGGGCAATCGTTTTTGCTGTTCTTCTCATGTTTTCTTCGCTCATCAT
GATCCCTGTAGTCgctcttttgaaatatttcaaaatcatcaAGAAGGGAA
GCAGCCCTGGGAGACTGGGACTTAGTTTAAGTAAAAAGACACGTGGTAGG
AAACAGAGGAATGGTAACGATATAGCTTCTGTTCATCGGCCCCTTCAAGC
CATGGAAAGTAATACGTTTTCAATGGCCACTGAGTTCTCTGACAACATGT
TCAAGTTGTGAGACCGCGATGCAATGAATGATGGGTAATATGGTAACCTG
TTGGTTGTTGGTGGTGCATGCTGGGAAATGATGTTCTCTCTGTTCACGGC
AAAATGAACTGATACAGTAGTCAGCGAGAATCTATggctgatgaaaaaaa
aaattcaatgttgTGACACGTTTAAAAAGGGAATGTAACTAATGACGATT
TCATGAATGACGATTGATCACGTGGTCTGAGATGTTTTGCCTTCAGAAGC
CCTGGTTATCTTCAGCAAAACCTGTAAATCTTTTTGCTTACCTATTATCC
AAAGTTAAGATATGGAAATCTCTGCAATGGGTTCTTCTACGGTTTTTACA
AGCTTTAATATCTCGactttttggaaaatagttagtCGAAAAATTTTGGA
GGTTTACTTATGGCAACGAAGGAATATACAGGCCAAAATATTCTCAACCA
CCTGCGTAACCAAGTAAGATGACCCAACTCCCAGAAGGATTTATCGACGC
AATTAATATTGATAGATGATCACAAAAGAACTTTAATATCGATTTGGTGT
TATTTTACAATGGAACTGAACCTTGAAAGCATTGCTGCATTTGGAAATAT
TTCCATCTATCCACGGAAAGCTTTTTAAAACTTACGAATATACTCAGTAG
TTTGTATTCCGTTGTTACAATCGTAAACTTCTTATGCGCATTGTCAAAGA
AATTTGTCACccaatatttaattttttttgctaattaTGTTGCCAAAATG
TCAGTTATGCTACTCTATTT
Run BLAST on NCBI

transcript from alignment at sc0000246:109861..120301-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016683 ID=TCONS_00016683|Name=TCONS_00016683|organism=Clytia hemisphaerica|type=transcript|length=10441bp|location=Sequence derived from alignment at sc0000246:109861..120301- (Clytia hemisphaerica)
GAAAAATCGAATAGAGTAAGAGTAATCTTCCCGAAATATTCATATGAACT
AAATAGATAAACAAACAGTGATATTATGGGAAAGAAGAAGGACAAAGGCT
CAGGCCTGATGAATTTAGCCTCTGTTTTGAGCGAAGCGTCAAAGAAACCA
TACTTGGAACAACATACAGATCACGTGACAGGTGGTGGCTACCCAATGTC
ACCCAATATTTTGAGCGGTGGAACGGAAACCACTGGCTCCACTTCTGGGG
ATTTTAATATGTCCCTTGATGATGAAGGTGATTAAGATTTTATTTTCACT
TTTCAGAATATAGACCTTTGTCTACTAGATAACAGGTTTTTAGGAGTTTC
CTGTTTTTTGGTACCTATGGACCGCTTATAAATGATTCTGTTAGTATATA
CCCTTCCATTTACATCAGTTAGTGATAGAATGTTGTATGGAAAATGAACC
AACTAAATAGTAAGAATCGATAGCAAAGTTAACTGAAGCGAAGCGTCACC
GTTACACACCAGGGTTCATGGTTCAAATCATAGTCCATAGAAATTTGAGC
TTGGCGTAAATACAATCGAAAGTCTATCTAAACCTGTTCTAGATTATATC
TACGTAAAATATCAACTTTTCCTATTTATTTTCAACTAAAGTATAGTGAA
CGCAGTAGCTGCAAAAACTCTCATACTTATAAAGCCCCCCAGAAACTCTC
ATACTCATAAAGTCCAAATAGAATAAAGTTAACTTTAATACTTGATTTAA
AATTACATCAGTTCGATAAACTCAAAAATAGGTCCGAACTATAGTCCTCC
TCGGATGCCACTTTTAGATCCTTGTTTGTATGAGAATGGCATCGTGATAT
AACTTCATTTAATCATGACATCATTCTCAATCGAAACAGTTTGCCACAAT
TTAGTTACAAATACACATGAAGATGTAAATGAAAAAAAAATTACTTTGTT
AAGCCTCTATTTCACACGAAAAATCTTGATTTCATCGAAAAAGAATTTGT
TGAGAGAGAAAGGTTATAAAAGTGGATTAGCCCATCTCATTTTTGACCAT
TGACATCCGTTTTGTGACCATCAACAACATTTCTTCCCCTTTTCATTTTT
TCATCTTCATTTTTATTTTTCACTGGCTTGAAATCAGAAGGTAGTACAGT
CTTCAGTCTTAGCGGTCTTTGCCAATGTTCACAAGTTTATTGGCTAAGTC
CACATATATCTTATATGAAACACTACATAGAACTACTGTATTCTTCCCAA
GTCACGTCAACCTTGATTTTTAAATGAATTATTATTGCAGCATGATTTTG
CTTCAGTTAGGGACAGAGTAGCTCCATCTAGTGCTTTGTATAATATATCT
GTGGCTAAGACACGTTCGTTGCAAAGAGAATCCAGAAATACGAAATCATC
TTTCAAACGCTTCAGCATCAAACTACCGGATGATTTCTATCAAAACCCCT
GTTCTTGTCAATTTACTCATCTTTCTAGTGACCAAATATCTTCCTTTTTT
TATCTCCTTAGTATCCAACCGTTTCTCTTTTATCTCTTTTAGATCAGTAC
CCTGGAGACGTGTGCCACAAACACCGAAAAATGTCCAAAGCGTCAGGCGT
AGGAAGCTCACGAGAGAAATGGCCACGTCGATCAGAGTTTCTCTTGATGT
TGTTTGGTTATACCGTGGGTCTTGGAAATGTGTGGAGATTTCCTTACCTG
TGTCATAAGAATGGTGGAGGTATGCTGGTTTTTATTTTAATCCTGGGTTT
TCGAGTCTTTTTGGGTCGGGCTTTTTTGCTCAAGGGTCCGAAAAACGTCC
GGTCCGGTCTAAAGCTTTTTTCACATGCACGTAAAATTTGAATTTAGACC
TTACGGAAAATCGTTCGTAAGGCTGTCTTTTGGAAATTTCCCCGACATTA
TCTGGAGTTTTTGTTGATTAAGAGGATCTTACGTGACTTTTCCTTCCGTT
CAAAACTTTTTGAACGTAAGCAAACTCTGGATAAGGCCTTAAAACACTAC
ATAAGCTTTACACTAGTGCGATAATCACTATATCCATCTCTGATAGACAT
GAGGGGACACAGTGGATCAAGATGTAAAAAAGTGAGACAGCAAGGTCATC
AAAATACGTTTCCACTAATCTGCAGAATGAAGAAAAATAACTATTCATTA
ACAAAACCATTACATGTGCTAGAAAAATTACAAGAAATAAATTGAGCTTT
TAAACTGTCTTTCTCATTACTTCTTACAAGATAACTCTTTTTTTTCAGCT
TCCTTTCTCATCCCCTACTTTATTATACTGGCTGTAGAAGGGATGCCGCT
CTATTACATGGAGTTATGTCTCGGTCAACGGCTAAGGAACGGATCAGTTG
GTGTCTGGCATCTAGTTTCTCCTTACTTGGATGGTTTAGGATTTGCATCT
GTGGTGATTTGTATCATGGTCTGTTTATATTATAATGTGATTTTATCATG
GTGTTTGATTTATTTCGTCAACTCTTTCAAGAATCCTTTACCATGGTCAG
AATGCCCGAAAGTCACCATCACCAAAGGTAAAATGATTTATTTTGAAAAT
CACGTGTTCTCTCTTATATTGATAGTATCATACTCGTATTCATTCTAATC
AAGGATGATAACTGCTACGCCTCCGATCCAGAAATAGTGGATAATATAAG
CTTAGTTCAGTGTTTTGAGTATAGTTTATTTCATGGTATTATCCTCCATT
TTTGTAGGAAATCAGACCTTCCAAAAGCCAAATGCTGAATGTGAGAAGGC
AGGGCCGACCAGTTATTTCTGGTATCGCACAACACTTGATATCTCTGAAG
ATATCGAATCTGGTAATGAAATCAATTGGACAATCGCGTTCAGTTTGTTG
TTCGCTTGGTTGGTCGTTTGGCTTTGTATGGTGAAACGAATCAAGTCGGA
GGGCAAGGTATGAAAACAAATACACTTTTTTATAAGAAACAGTATCTCCT
TACTGAAGTTTGCTGTTCTCATGTTTTAGATCTGAAATTGCTCTTATCGT
GCTCTTATTAATAAACTGAGTACTAATTTGACCCTAAATTCAGCCATTTC
ATGCTCAGGATTGTTCTTAAAATGTTCTTATGTTTTGGCACTTTTCAGCC
TTAAAAAATTAGAAAATTTTCATATAAAAAATGAGTGTAGCAAAAGATAT
CANACTTTTCAGCCTTAAAAAATTATAAAATTTCCTTATAAAAATGAGTG
TAGCAAAAGATATCAAACTAACGCCAATCTAAGTCCTTTTGAAGAACGAT
AAACGTAATATGATGGATTTCAGCTTTGGAAGATTTAAAATTTACGTTTT
TCTGTCAGAAAATTCAATGTTGGTTTTGGTTATACAGTAGATTGTCCTTA
ACTCGAATGTCTCCTTAGCTCGAAGAGGTTTTATTATCCCTTCAACTTAA
CAATGCCTTACAATACTTACTCCATAATTCGAAATATGTACCCCATGTTT
GAGTTATGGAGGCTCGACTGTAAAATATTTCTGTCACTAGAGTAGAGTAT
GTCTTAGAAAGTTTTGTAATCAAGCCATACATTCTATTAAGTTATTTTGA
TATTCTCTATTAACTATTTCATCCATTTGTTTTTCTTTTAGGTAGTGTAC
GTGACTGCAACATTACCCTTGATCTTGCTTGGTGCAATGTTCTTCCGTGG
CGTCAATTTGGACGGCTTCCAACAAGGACTTGCCCTTCTTTTCGTTCCTG
AAGTATGTATGCCAATTGATTTACGATTTTATAGCTTTTCATTTTTCACT
CGAACACTTTCAGAGTTTTATTTTATATGATTGACCATATGATTGTCCGT
ATAAAAAACTCTGGTCTGGAAGCTTGTTTAAACTTTTTGTTTTAGCTTTT
TCATTTGTTAATATCAAAAGATAAAAATCGATTGTCTCAGTTTTTGATCG
CGTTACCAAGTTTTCCTCTTGGAGTTGGTTTAAGATTTAATCACATGATC
AAAAAGCGAGCAAGAAAACAAACTAATTTCTCTAACGCAGGTTCAAGTAA
GAAACAATGGCAAGAAACAAAAGGCTTCCAGACAAAAGGCTTCCAGACCG
GGGTTTTTTATACGGACTATGAATTGACGTAATTGACGTGATAGCTTCGT
ACATTTCCATCACGCGAAGACACCCGAAAGTACACCCAGTTCTGAGAATA
AGTTCTGTTCCCTTCATTACTCACTTCATTTTTCAGTTCTCAAGATTGAA
AGATCCTTTAGTCTGGTTAGACGCTGCCACACAAACATTCTACTCTCTCG
GTATCGCATATGGATCTCTGATCGCATTTGCAAGCTACAACCCGCTAAAG
AATGACACAACCAGAGATGCTATCACCATCTGCCTCATAGATGCTGGAGT
CAGTGTCTATGCCAGCGTTGTTATATTTTGTTTCATTGGGTATCGTGCTG
AGTTGAAAATGCACGATTGTCTCGCCATGTTGGGGCTGAACCATACAGAG
TCGGAATCGTACGAAATCTTCGTAGGGAATGCAACAGTGAACGGAAATAT
AACTGAAATCGTATGTAGTAAAAAGGAATTCCTTGCAGAGGTATTTTGAG
ATCTTTAAAAAATCTTTTATTCTTATTGCACAAATTCTTCCAACCAAATT
CAAAGTGTTTTACTCGCTTTATTTCAAGGACAATCGCCAATGTATGAGAT
TTGAGTATCGTAAGCTCACAGTCTTTTTTACTCCTAGGAATATTCAATAG
AACATTTTCATCCAAACAAAGTCCAATCTCAAAATCAATCCTATCTTTTA
CCTACTGTATGAATTTTTATATCGCCAGCTCATCACATTACTTGAATGTG
CATTCTTCACTTTACTAGCTTTCACAATCGACTGGTCTTGCCTTCATCAC
CTTCACCGATGCCATCAACACGTTGCCACAAGCTCAAATGTGGTCCATAT
TGTTCTTCCTGATGCTTCTGATGCTAGGTGTAGACACACAGTTCGGAATG
TTGGAAGGGCTATTCACGCCGCTCTTTGATGCGAACCCGTTTCCAAAACT
GAGGAAAGAAATTGTGACAGGTTCGGAAAGGTTTTTTTTTACTTTTTGAA
GCACAACCTATTTGTGAGATCACCTTTATGGGTTTTACTTTTTCCCATGT
TTAACTTTCGAATTAAGGTTTGAAACTTAGGTTACGTGTCTGTATAAGTT
TATCTATATATTATATGTAGAGTCTTAATATAACTATATATTTCCCTTCT
GTCCGCACTAGTTCTCTCAGTTTGAACCACAAGTGATTTTGTGGTTTAGA
GATGCTGGCTAAATCGATCTAGCCATCCAGGGTGCAGTATGCAGTGCTGA
CGAGTCCTAATAAGGACGAAATGCATGCTGCTCTGCCACCCAAATCTCCT
GAGTGAATATAGTTGGACAGAAATTCTTGTTGTTCAGCAAGGGAACAAAT
ACCACCAACGGTTTGTGTTCCTATCAGACCAAGAAAGTTGATCAGACCTT
CTTTATTTGAGTGATTTATCTCGAGGTTTTTTTAGACACCTCCTTCTCAC
AGAGCCGGTAGCATTTTTTTCAGCCATTGGGGGTAAAAATAACAGAGTGA
AACTCGATGGGGATAGATATTCCCGTATTTCACATGGCTGGAGATTTTAA
TTATTTTGTTTTCAGAAAGACAGAAAACAAAACAAAAATAACACCACAAC
ATTGAGGATTTCTTTATTTGATTATTTTCAGTAGGACAGAATAATTTTCC
ACTGGGGACGATATTTTGGCCAATTTTTCCAGTGGGAGAGGTTTCCACCG
GGTCTGTGAGAAGGGAGTGTATTTAGCCTCTTTACAAATTTATTAATTTC
GCCTTAGCGAAAGTATTACGATAGGCATTCAGCGGCGGTGTCATCGGACG
AAAAATTAGAAAACGAAAGTACTTGATACGGTGGACGAACTCACTAAATT
TAATTTACAAATTACACGCATGTATAACCACGGACGATTTTTGCGCGCTT
TCTTTGGATCACGTCATATATCTTTGTGTCTTAGCTTCAGAGTTTTGATT
TTTTCTTTATTTTCTTATAAGCATATACTTTATAAGATTCAAATCAATAA
CTCTTGATAGACGGTGATATACCTTTCGGTAATTAGATCTTTCAAAGTAA
ACAAGGGGTGCCCCACAATATGAGCATATTTATTTTTCTTATGAGCATAT
ACTTTATAAGAATCAAATCAAAAACTCTTGATAAACGGTGATATACCTTT
CGGTAATTAGTTCTTACAAAGTAAACAAGGGATGCGCACAATATGAGCAT
ATTTATTTTTCTTATAAGCATATACTTTATAAGAATCAAATCAATAACTC
TTGATAGACGGTGACATACCTTTCGGTAATTAGTTCTTACAAAGTAGACA
AGGGAGGCGCACAATATGAGCATATTTGTTTTTCTTATAAGCATTTACTT
TATAAGAATCAAATCAGTAACTCTTGATAGACGGTGATATGCCTTTCGGT
AATTAGTTCTTACAAAGTAGACAAGGGAGGCGCACAATATGAGCATATTT
GTTTTTCTTATAAGCATTTACTTTATAAGAATCAAATCAGTAACTCTTGA
TAGACGGCGATATACCTTTCGGTAATAAGTTCTTACAAAGTAAACAAGGG
AGGCGCACAATATGAGCATATTTATTTTTCTTATAAGCATATACTTTATA
AGAATCAAATCAATAACCCTTGATAAACGGTGATATACCTTTCGGTAATA
AGTTCTTACAAAGTAAACAAGGGGCGGCGCACAATATGAGCATATTTATT
TTTCTTATAAGCATTTACTTTATAAGAATCAAATCAATAACTCTTGATAG
GCAGTGACATACCTTTCGGTAATTAGTTCTTACAAAGTACACAAGGGATG
GCGCACAATATGTACATATTTTATTTTTCTTATAAGCATATACTTTATAA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGATGTAAAGTAGATTTCAGATTAGCTTC
AATCTCTACTTCTTGTTTTTTCCATGCAGTTCAAATTCTAGGCGAAATTT
TCGACTTCAAGTCGTCTTGTTTAACTTTACAACTAATGTTCCATTTCAGG
AATCGTCTGTCTTGCTATTTACTTACCAAGTTTAATCATGACACAGCATT
CTGGTAACTATTGGTTACAGATCATTGAGAATTATTCGGTTGGAATTCCG
TTGCTGGTGGTAGCGTTGTGTGAAGTCATCTCCATATCATATCTGTATGG
CATAGAAAGGTATGTTAGAGGTACATTAATTCCATTAAGAGCCATTTTTT
AAAATAGTCTTCAGGGTGTGATACCTCACCTTTTGGATTTTGCTGGAATT
TGGGCCAAATGATCTATCACACAAGAAAATAAGACCCTGAAAATTTCACC
TTGATATCTCAAGTAGTTTTGCAGATATAGTGTCTCAAAGATAGGCTACT
AAGCGAAAATTGACCCCTGAAAATCATGAACTCTTGTGGGGAGCAGATTT
TGAAAGCCAATGAATTTTTATTCAAGTACATTAGAAAGCTGTTATTACTT
TGTGTAATCTGGGTTTGGAAGCACTTTTAGCTGGCTGCTGATGGTCCTTG
GGACTTTTTTGAAGCAAACTTTTGACCTGGAGTGGTTTACTGGTGGGTTT
TGGCCACAAAAATAATATTTTCAGGTTTTCCATCTTTGCGTAACCGTCAA
AAATGGCCGAAAAAATTGCTACTTTGGTAGATCTGGAGCAAAACTCAAGA
TGGCGTATTTTTTTGCGGCAACAAATTTTTTTTTGAAAATTTCAGCAAGG
CTTCCTTAGTAGGTCTAGTTGATAGCCTCAAAAAATCTCAGTGGGTTTTG
AAGTCTCTTAAAGATAAGATCGATCGATCAAAAATTTGCTTAACTTTGTT
GTTTTTCCCCTCTTAAAATGCTAAATCAGGCCCACTTAAGAGCTCTAAAG
ATTAATTTTTGTCAAGATATTGGTTGATCTTCTCTAGCCAACTAATCATT
GGCATTAAGGGAACATGAACTTCTAACGAATTTAGACTCATTCAGAAATT
CTACTTTGACATTAATTTGCGCTTTACCGCAAAATTTCTAAGTCCAAGTG
TCGTGATTAACTTTTAGACTGTCCAATATCTCTGTAAGCAACATTACTAG
AGTGATATTTTATGAGATACTGCAAACAATGCTGTTTAAATCTTCTGGAC
AAGAAATATTGGACAGTCTAAAGCTAATCACGACACTTGGACTTAGAAAT
TTTGCGGTAAAGCAAATTTGGTCCAAATTTCATCAAAATCTAAGAAGGTG
AGGTATCACACTTTCTTTATTCTGAAGATTAAAAAAAATGGCTCTTAACC
CATTAAGTGCCACTTCCATGATATGAGATCGCTCCATTTCTTTGTTCCTA
TACCAGTAGGTCTGAATCTAATAGCGCTGCGACATGTCGCGCTGTTTGTT
TACCTTGCCCGAACAAAAAAAACGACATTAGCATTGTTACCTAGTTTGAG
GACGCATTGGAAATCAAAAAAATATTGCATTAATTGCATAAGATTTCTCT
TAATAATGCCAAGTCGATGTTAGAAAAACAATGACGTCATTCAAACAATA
GCCGCTCCCTTTTGTCCAACCCCTACCCTCCCCGTTTACTGTGTACGTAT
TATATGGATGGCCCCAAAGGGCACTGGATCTTTTTCTGAAACAATCCTAA
AAATCAATTTTAATGATCCATTTAACAGGTTTTGTAATGACATTGAGTAC
ATGACGAACAAACGACCGAACAAAATTTGGGTGATATGTTGGAAAATTAT
TTCACCAGCCCTCATTGTTTTTGTGCTCATCTTCAGCATAAAAGACCTCT
GCACCAAATCACCTACCTATCAAGTGTGGGTAGCACATATGGTAAGTTAG
ACTGTGATCTGCTCTGCTTTACACGTTTTTTTTCCCTGATCACGTCATCA
TAAATTGGCCCAAAATTGCGTAAAAAGGGCAAATTTGAGTGGGCCCCAGG
CTAAAATCGTTTAGTAAGGTCTAAACTCGGTCCGTGCAAAAATTTCATGC
TTTTAGCCAAATTCCATCAAAATTATGCACCAATTTTGCCGTTTCGTATG
TATTTTTTGTTTGTTTTCTGCAATGTATAGCCACTATTTGAATGCCCAAT
ACTCGCTCAGCTCAATATCTATACACCAAACAAGTGCTTAGTATTAGCGG
GAATAAAATTATGTTAATCGTTCGTCCTTTCTTTCTTTATACAGGCAGAA
GGGAAATACGTTGAGCTTCCACCCTGGGCAATCGTTTTTGCTGTTCTTCT
CATGTTTTCTTCGCTCATCATGATCCCTGTAGTCGCTCTTTTGAAATATT
TCAAAATCATCAAGAAGGGAAGCAGCCCTGGGAGACTGGGACTTAGTTTA
AGTAAAAAGACACGTGGTAGGAAACAGAGGAATGGTAACGATATAGCTTC
TGTTCATCGGCCCCTTCAAGCCATGGAAAGTAATACGTTTTCAATGGCCA
CTGAGTTCTCTGACAACATGTTCAAGTTGTGAGACCGCGATGCAATGAAT
GATGGGTAATATGGTAACCTGTTGGTTGTTGGTGGTGCATGCTGGGAAAT
GATGTTCTCTCTGTTCACGGCAAAATGAACTGATACAGTAGTCAGCGAGA
ATCTATGGCTGATGAAAAAAAAAATTCAATGTTGTGACACGTTTAAAAAG
GGAATGTAACTAATGACGATTTCATGAATGACGATTGATCACGTGGTCTG
AGATGTTTTGCCTTCAGAAGCCCTGGTTATCTTCAGCAAAACCTGTAAAT
CTTTTTGCTTACCTATTATCCAAAGTTAAGATATGGAAATCTCTGCAATG
GGTTCTTCTACGGTTTTTACAAGCTTTAATATCTCGACTTTTTGGAAAAT
AGTTAGTCGAAAAATTTTGGAGGTTTACTTATGGCAACGAAGGAATATAC
AGGCCAAAATATTCTCAACCACCTGCGTAACCAAGTAAGATGACCCAACT
CCCAGAAGGATTTATCGACGCAATTAATATTGATAGATGATCACAAAAGA
ACTTTAATATCGATTTGGTGTTATTTTACAATGGAACTGAACCTTGAAAG
CATTGCTGCATTTGGAAATATTTCCATCTATCCACGGAAAGCTTTTTAAA
ACTTACGAATATACTCAGTAGTTTGTATTCCGTTGTTACAATCGTAAACT
TCTTATGCGCATTGTCAAAGAAATTTGTCACCCAATATTTAATTTTTTTT
GCTAATTATGTTGCCAAAATGTCAGTTATGCTACTCTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009323XLOC_009323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016683-exon-sc0000246-1575043694:120025..120301TCONS_00016683-exon-sc0000246-1575043694:120025..120301Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:118583..118759TCONS_00016683-exon-sc0000246-1575043694:118583..118759Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:117775..118053TCONS_00016683-exon-sc0000246-1575043694:117775..118053Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:117395..117594TCONS_00016683-exon-sc0000246-1575043694:117395..117594Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:116600..116710TCONS_00016683-exon-sc0000246-1575043694:116600..116710Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:115762..116115TCONS_00016683-exon-sc0000246-1575043694:115762..116115Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:115282..115483TCONS_00016683-exon-sc0000246-1575043694:115282..115483Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:112893..113052TCONS_00016683-exon-sc0000246-1575043694:112893..113052Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:111261..111423TCONS_00016683-exon-sc0000246-1575043694:111261..111423Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1575043694:109861..110907TCONS_00016683-exon-sc0000246-1575043694:109861..110907Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:120025..120301TCONS_00016683-exon-sc0000246-1510915933:120025..120301Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:118583..118759TCONS_00016683-exon-sc0000246-1510915933:118583..118759Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:117775..118053TCONS_00016683-exon-sc0000246-1510915933:117775..118053Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:117395..117594TCONS_00016683-exon-sc0000246-1510915933:117395..117594Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:116600..116710TCONS_00016683-exon-sc0000246-1510915933:116600..116710Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:115762..116115TCONS_00016683-exon-sc0000246-1510915933:115762..116115Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:115282..115483TCONS_00016683-exon-sc0000246-1510915933:115282..115483Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:112893..113052TCONS_00016683-exon-sc0000246-1510915933:112893..113052Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:111261..111423TCONS_00016683-exon-sc0000246-1510915933:111261..111423Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1510915933:109861..110907TCONS_00016683-exon-sc0000246-1510915933:109861..110907Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:120025..120301TCONS_00016683-exon-sc0000246-1491911889:120025..120301Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:118583..118759TCONS_00016683-exon-sc0000246-1491911889:118583..118759Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:117775..118053TCONS_00016683-exon-sc0000246-1491911889:117775..118053Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:117395..117594TCONS_00016683-exon-sc0000246-1491911889:117395..117594Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:116600..116710TCONS_00016683-exon-sc0000246-1491911889:116600..116710Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:115762..116115TCONS_00016683-exon-sc0000246-1491911889:115762..116115Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:115282..115483TCONS_00016683-exon-sc0000246-1491911889:115282..115483Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:112893..113052TCONS_00016683-exon-sc0000246-1491911889:112893..113052Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:111261..111423TCONS_00016683-exon-sc0000246-1491911889:111261..111423Clytia hemisphaericaexon
TCONS_00016683-exon-sc0000246-1491911889:109861..110907TCONS_00016683-exon-sc0000246-1491911889:109861..110907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:109861..120301 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365747	0	0.305528	0.170807	0.944636	0.38976	7.09816	8.26028	6.81928	8.30146	2.8887	5.20719	4.80362	4.81911	2.25694	2.18435	2.12034	3.50547	9.82111	12.1495	4.93222	5.27463	1.25808	2.78606	2.81403	4.23841	0.987845	1.5059	0.324273	0.413537
Blast
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BLAST of TCONS_00016683 vs. Swiss-Prot (Human)
Match: S6A19 (Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Homo sapiens GN=SLC6A19 PE=1 SV=1)

HSP 1 Score: 469.929 bits (1208), Expect = 1.953e-152
Identity = 233/585 (39.83%), Postives = 351/585 (60.00%), Query Frame = 1 
Query:  337 GSSREKWPRRSEFLLMLFGYTVGLGNVWRFPYLCHKNGGASFLIPYFIILAVEGMPLYYMELCLGQRLRNGSVGVWHLVSPYLDGLGFASVVICIMVCLYYNVILSWCLIYFVNSFKNPLPWSECPKVTITKGNQTFQKPNAECEKAGPTSYFWYRTTLDISEDIESGNEINWTIAFSLLFAWLVVWLCMVKRIKSEGKVVYVTATLPLILLGAMFFRGVNLDGFQQGLALLFVPEFSRLKDPLVWLDAATQTFYSLGIAYGSLIAFASYNPLKNDTTRDAITICLIDAGVSVYASVVIFCFIGYRAELKMHDCLA------MLGLNHTESE-SYEIFVG-----NATVNGNITEIV---CSKKEFLAELSQSTGLAFITFTDAINTLPQAQMWSILFFLMLLMLGVDTQFGMLEGLFTPLFDANPF-PKLRKEIVTGIVCLAIYLPSLIMTQHSGNYWLQIIENYSVGIPLLVVALCEVISISYLYGIERFCNDIEYMTNKRPNKIWVICWKIISPALIVFVLIFSIKDLCTKSPTYQVW---VAHMAEGKYVELPPWAIVFAVLLMFSSLIMIPVVALLKYFK 2034
             SSR KW  +++++L   G+ VGLGNVWRFPYLC  +GG +F+IP+ I+L +EG+PL Y+E  +GQRLR GS+GVW  + P L GLG AS++   MV LYYN I+SW + Y  NSF+ PLPWS+CP       NQT      EC ++ P  YFWYR TL+IS  I     I W +   L  AW V+++C ++ I++ GK VY+T+TLP ++L     RG+ L G   G+  LF P  + L  P  WLDA  Q F+S  +A+G LI+F+SYN + N+  +D++ + +I+   SVY ++V++  IG+RA  +  DC +      + G +  E   + E FV      NA+      ++V   C    FL+E  + TGLAFI FT+AI  +P + +WS+LFF+ML  LG+ + FG +EG+  PL D     PK  KE++TG++CL  +L   I T +SG YWL ++++Y+  IPLL++A CE+ S+ Y+YG++RF  DIE+M   +PN  W + W+++SP L++ + +F      ++  TY +W        + + +  P W  V  V++     + IP  A+ K  +
Sbjct:   29 ASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSFQEPLPWSDCP----LNENQTGYV--DECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPGYEEFPKSQKISYPNWVYVVVVIVAGVPSLTIPGYAIYKLIR 607
The following BLAST results are available for this feature:
BLAST of TCONS_00016683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S6A191.953e-15239.83Sodium-dependent neutral amino acid transporter B(... [more]
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