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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016707 ID=TCONS_00016707|Name=TCONS_00016707|organism=Clytia hemisphaerica|type=transcript|length=1455bp
CTTATACATAAAAGAAAAGAGATCTGCTGAATCATATCAGacaagaagag
aaaaaaagagtaaaaatgCTACACAAACCGCCACTAGCAGGAACAAAGAA
acagaagaaaagaagaaacagCGGCAACAGAAAGATGCAGCAAAGACTGC
CACTAGCAGGAACAAAGAAacagaagaaaagaagaaacagCGGCAACAGA
AAAATGCTACACAAACCGCCACTAGCAGGAACAAAGAAACAGAAGGACAG
AAGAAACAGCGACAACAGAAAGATGCAGCAAAGACTGCAGTTAGCAGAAA
CAAAGAAAccgaagaaaagaagaaacagCGACAACAGAAAAATGCTACAC
AAACCGCCACTAGCAGAAACAAAGAAACAgaaggaaagaagaaaaagcGA
CAACAGAAAAATGCAGCAAAGACTGCCACTAGCAGGAACAAAGAAACAGA
AGGAAAGAAGAAACAGCGACAACAGAAAGATGCAGTTAAGACTGCAGTTA
GCAGAAACAAAGAAACAGAAGGAAAGAAGAAACAGCGACAACAGAAAAAT
GCAGCAAAGACCGCAGCTAGCAGGAACAACGAAAccgaagaaaagaagaa
acagCGACAACAGAAAAATGCAGCAAAGACCGCAGCTAGCAGAAACAAAG
AAACAGAAGAATCTGAAATAACATTTCCTCCTCAAGTCACTGAAGAGCAT
AAAATGAGCTGTCTGACAAAATTCATCCAAGCAACATCAAATGAATCCCT
GAGTGTAGTTGAATGCGCCGTATGTGCTGAATCAGTTCAagactttgaaa
aattcttcATCGAAGACGTACCAAGTAAAGAACTCCTATCTCAAGATTCG
TTTGATGGTGAGATATTAGAAGAATATAAACATGATGCTTTGATCTTATC
ATCTAGTGGGACTGATGAACAGAATGTTGTCTGTTGCAAAGCATGTTTAC
ATCATCTACAAAATGGAAAGTTACCACCGTTAAGTATTGCTAATCATTTT
CAATTTGGAAAAGCACCGCCCGAGCTTTGCGACTTGACCTTACCAGAAAA
ATTATTGATAGCATTTTATCGCCCAAAAATGTATGTCACAACGCTTCGGT
CTTTTGCCGGTCCAGGAACTGCACAATCAGCAATAAAAGGAAATACAATC
ACATTTCCTCAAGACGTTGCCAAGATTGCTGAAAGTTTACCAGCGAACCC
AAAAATTTTGGCAGACCATTTGAAGGTTGTTTTTATTGGTAATGGTGCTC
CGTCAagagaacttttaaaaaaagtattcaAAGTGAGACGGCAAAAGATT
TATGATGCATTGAACTTCTTAATTTCCAACCACCCACTTTACTCTGATGT
CATTTTATCGTCTGTCGATCTGCCTGAAGATGATGTACCTGATGCAATTC
TATCCACCATAACATCGCACGAAGATCCAGATGATGAGGACGGGAAGGAA
CACGC Run BLAST on NCBI protein sequence of TCONS_00016707-protein >TCONS_00016707-protein ID=TCONS_00016707-protein|Name=TCONS_00016707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
LYIKEKRSAESYQTRREKKSKNATQTATSRNKETEEKKKQRQQKDAAKTA
TSRNKETEEKKKQRQQKNATQTATSRNKETEGQKKQRQQKDAAKTAVSRN
KETEEKKKQRQQKNATQTATSRNKETEGKKKKRQQKNAAKTATSRNKETE
GKKKQRQQKDAVKTAVSRNKETEGKKKQRQQKNAAKTAASRNNETEEKKK
QRQQKNAAKTAASRNKETEESEITFPPQVTEEHKMSCLTKFIQATSNESL
SVVECAVCAESVQDFEKFFIEDVPSKELLSQDSFDGEILEEYKHDALILS
SSGTDEQNVVCCKACLHHLQNGKLPPLSIANHFQFGKAPPELCDLTLPEK
LLIAFYRPKMYVTTLRSFAGPGTAQSAIKGNTITFPQDVAKIAESLPANP
KILADHLKVVFIGNGAPSRELLKKVFKVRRQKIYDALNFLISNHPLYSDV
ILSSVDLPEDDVPDAILSTITSHEDPDDEDGKEH Run BLAST on NCBI transcript from alignment at sc0000246:373743..375197 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016707 ID=TCONS_00016707|Name=TCONS_00016707|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at sc0000246:373743..375197 (Clytia hemisphaerica)
GCGTGTTCCTTCCCGTCCTCATCATCTGGATCTTCGTGCGATGTTATGGT
GGATAGAATTGCATCAGGTACATCATCTTCAGGCAGATCGACAGACGATA
AAATGACATCAGAGTAAAGTGGGTGGTTGGAAATTAAGAAGTTCAATGCA
TCATAAATCTTTTGCCGTCTCACTTtgaatactttttttaaaagttctct
TGACGGAGCACCATTACCAATAAAAACAACCTTCAAATGGTCTGCCAAAA
TTTTTGGGTTCGCTGGTAAACTTTCAGCAATCTTGGCAACGTCTTGAGGA
AATGTGATTGTATTTCCTTTTATTGCTGATTGTGCAGTTCCTGGACCGGC
AAAAGACCGAAGCGTTGTGACATACATTTTTGGGCGATAAAATGCTATCA
ATAATTTTTCTGGTAAGGTCAAGTCGCAAAGCTCGGGCGGTGCTTTTCCA
AATTGAAAATGATTAGCAATACTTAACGGTGGTAACTTTCCATTTTGTAG
ATGATGTAAACATGCTTTGCAACAGACAACATTCTGTTCATCAGTCCCAC
TAGATGATAAGATCAAAGCATCATGTTTATATTCTTCTAATATCTCACCA
TCAAACGAATCTTGAGATAGGAGTTCTTTACTTGGTACGTCTTCGATgaa
gaatttttcaaagtctTGAACTGATTCAGCACATACGGCGCATTCAACTA
CACTCAGGGATTCATTTGATGTTGCTTGGATGAATTTTGTCAGACAGCTC
ATTTTATGCTCTTCAGTGACTTGAGGAGGAAATGTTATTTCAGATTCTTC
TGTTTCTTTGTTTCTGCTAGCTGCGGTCTTTGCTGCATTTTTCTGTTGTC
GctgtttcttcttttcttcggTTTCGTTGTTCCTGCTAGCTGCGGTCTTT
GCTGCATTTTTCTGTTGTCGCTGTTTCTTCTTTCCTTCTGTTTCTTTGTT
TCTGCTAACTGCAGTCTTAACTGCATCTTTCTGTTGTCGCTGTTTCTTCT
TTCCTTCTGTTTCTTTGTTCCTGCTAGTGGCAGTCTTTGCTGCATTTTTC
TGTTGTCgctttttcttctttccttcTGTTTCTTTGTTTCTGCTAGTGGC
GGTTTGTGTAGCATTTTTCTGTTGTCGctgtttcttcttttcttcggTTT
CTTTGTTTCTGCTAACTGCAGTCTTTGCTGCATCTTTCTGTTGTCGCTGT
TTCTTCTGTCCTTCTGTTTCTTTGTTCCTGCTAGTGGCGGTTTGTGTAGC
ATTTTTCTGTTGCCGctgtttcttcttttcttctgtTTCTTTGTTCCTGC
TAGTGGCAGTCTTTGCTGCATCTTTCTGTTGCCGctgtttcttcttttct
tctgtTTCTTTGTTCCTGCTAGTGGCGGTTTGTGTAGcatttttactctt
tttttctcttcttgtCTGATATGATTCAGCAGATCTCTTTTCTTTTATGT
ATAAG Coding sequence (CDS) from alignment at sc0000246:373743..375197 >TCONS_00016707 ID=TCONS_00016707|Name=TCONS_00016707|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000246:373743..375197 (Clytia hemisphaerica)
GTGTTCCTTCCCGTCCTCATCATCTGGATCTTCGTGCGATGTTATGGTGG
ATAGAATTGCATCAGGTACATCATCTTCAGGCAGATCGACAGACGATAAA
ATGACATCAGAGTAAAGTGGGTGGTTGGAAATTAAGAAGTTCAATGCATC
ATAAATCTTTTGCCGTCTCACTTtgaatactttttttaaaagttctctTG
ACGGAGCACCATTACCAATAAAAACAACCTTCAAATGGTCTGCCAAAATT
TTTGGGTTCGCTGGTAAACTTTCAGCAATCTTGGCAACGTCTTGAGGAAA
TGTGATTGTATTTCCTTTTATTGCTGATTGTGCAGTTCCTGGACCGGCAA
AAGACCGAAGCGTTGTGACATACATTTTTGGGCGATAAAATGCTATCAAT
AATTTTTCTGGTAAGGTCAAGTCGCAAAGCTCGGGCGGTGCTTTTCCAAA
TTGAAAATGATTAGCAATACTTAACGGTGGTAACTTTCCATTTTGTAGAT
GATGTAAACATGCTTTGCAACAGACAACATTCTGTTCATCAGTCCCACTA
GATGATAAGATCAAAGCATCATGTTTATATTCTTCTAATATCTCACCATC
AAACGAATCTTGAGATAGGAGTTCTTTACTTGGTACGTCTTCGATgaaga
atttttcaaagtctTGAACTGATTCAGCACATACGGCGCATTCAACTACA
CTCAGGGATTCATTTGATGTTGCTTGGATGAATTTTGTCAGACAGCTCAT
TTTATGCTCTTCAGTGACTTGAGGAGGAAATGTTATTTCAGATTCTTCTG
TTTCTTTGTTTCTGCTAGCTGCGGTCTTTGCTGCATTTTTCTGTTGTCGc
tgtttcttcttttcttcggTTTCGTTGTTCCTGCTAGCTGCGGTCTTTGC
TGCATTTTTCTGTTGTCGCTGTTTCTTCTTTCCTTCTGTTTCTTTGTTTC
TGCTAACTGCAGTCTTAACTGCATCTTTCTGTTGTCGCTGTTTCTTCTTT
CCTTCTGTTTCTTTGTTCCTGCTAGTGGCAGTCTTTGCTGCATTTTTCTG
TTGTCgctttttcttctttccttcTGTTTCTTTGTTTCTGCTAGTGGCGG
TTTGTGTAGCATTTTTCTGTTGTCGctgtttcttcttttcttcggTTTCT
TTGTTTCTGCTAACTGCAGTCTTTGCTGCATCTTTCTGTTGTCGCTGTTT
CTTCTGTCCTTCTGTTTCTTTGTTCCTGCTAGTGGCGGTTTGTGTAGCAT
TTTTCTGTTGCCGctgtttcttcttttcttctgtTTCTTTGTTCCTGCTA
GTGGCAGTCTTTGCTGCATCTTTCTGTTGCCGctgtttcttcttttcttc
tgtTTCTTTGTTCCTGCTAGTGGCGGTTTGTGTAGcatttttactctttt
tttctcttcttgtCTGATATGATTCAGCAGATCTCTTTTCTTTTATGTAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016707-exon-sc0000246-1491911889:373743..375197 | TCONS_00016707-exon-sc0000246-1491911889:373743..375197 | Clytia hemisphaerica | exon |
| TCONS_00016707-exon-sc0000246-1510915933:373743..375197 | TCONS_00016707-exon-sc0000246-1510915933:373743..375197 | Clytia hemisphaerica | exon |
| TCONS_00016707-exon-sc0000246-1575043694:373743..375197 | TCONS_00016707-exon-sc0000246-1575043694:373743..375197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000246 | supercontig | sc0000246:373743..375197 . |
Blast
The following BLAST results are available for this feature:
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