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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016710 ID=TCONS_00016710|Name=TCONS_00016710|organism=Clytia hemisphaerica|type=transcript|length=1075bp
TTTTTATTGTACCCACGAGCGCACCCATTCCATATCTTTCGCGATAATGT
CCAAAATGGTAGCTTCAGCTGTGTGGACTAAACGAAAGGGAATTCTGCTT
TTACCTTGACCTTCACCTTCACCTTGGAATTGTCTGATGGctcatatttt
cttttcttgatgGTCAATGGTATAAAAGCTGTATATCAAATCTTCCGAAA
TAGGGATGTTGGTTACATCGTGTATCCTGTAAGGCACTTATCAAGATACT
CACTGAATGCTTCCTTCGAACTTGAACAGTTGAATTTGAATTGTCATTAT
ATTGGATGATATGATTTAGAAGACCTTGGCCATGCacaattaaattttca
caattgACTTACAGCttcattcaaattttcgatGACCATGggtttatttc
attttgaagagcAATTGTATCAAACAATTTAGGACATAATATTCTGCTAT
GATGTGATAACTTCTTCAGTAAtggagttgaaaaatatttggaCATTCAA
AATACTTCGTGGTAATTTTTTCAGGAATGATCAAGGGATCTTTGAAAAAT
CAGAGAAGAAAATGTTTAGTTACTTGAATAAAGATTAGAATTCTATAGAT
AACCTTtccttttttcaatgttttatttaaattatcagaaattattcaaa
aaaaggtGAAGTATTGGAAAAGGAATTCAAAAAGCATCGCTTCAAAATAA
CTAACTGCCTCTCTACCTATTAGATTTTACTTTGcagcttgaaaacaaaa
gatgaGGTAGTAGTTATATGTCTTCTACAATGATGTGAAGGCTTTGCTGC
TATTATCCTGGTTTAGCATGCATCACACGGTTTTGTAATTGCCtgttaga
ttttattttttataacatAATTATAATagtattcaagattttttagcctt
tttatatctttatcttAAATATCAATACACTGTTGTTTCAGTGTTCTTAA
ATCTCTTATTATAGACCACTTTTCACTTTCAATGGAAGGTCACCTTTTCT
CTCTACAGACCtaataaattttgttagatAGTACAATACTATGTAGAAAA
TTGATTTACCCTTATTACACATAGA Run BLAST on NCBI transcript from alignment at sc0000248:21478..25713+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016710 ID=TCONS_00016710|Name=TCONS_00016710|organism=Clytia hemisphaerica|type=transcript|length=4236bp|location=Sequence derived from alignment at sc0000248:21478..25713+ (Clytia hemisphaerica)
TTTTTATTGTACCCACGAGCGCACCCATTCCATATCTTTCGCGATAATGT
CCAAAATGGTAGCTTCAGCTGTGTGGACTAAACGAAAGGGAATTCTGCTT
TTACCTTGACCTTCACCTTCACCTTGGAATTGTCTGATGGctcatatttt
cttttcttgatgGTCAATGGTATAAAAGCTGTATATCAAATCTTCCGAAA
TAGGTATGTATATTTTGCATGTGTGATATATATAATGATTGCGAGAATAA
GATTTGTAAACCTCGTTTATACATTATAGCGATATAAACTATAAATAATA
AGAATTGACCCTAAAAAATATCCTGGGGCAAATGAGCACCAGTTGCCAGT
TCCAAGTGTATATAATATACAAGGGTTGCAGTGTTGCTTTGGTTCTATAG
GAGATATCCATaagcaacaccggactgacaccggtgTCTGTCCGGTGTAT
GTCGTCTCCGGTGTAGCGAagggatactttttgccaccggacaaatacac
cggacagtcctgtgtgtcggcagggtcctgtgtTTTTTTGATCGGTCCCT
TTTTTTTGAACAGTTTGGCCGCAGAAGATGATATCATtcaccaggatgca
agtgaaatatttcaatctGCAGATCTAGACGGGggtttggttattatcag
ttactGTAGGGTTAGGATTGGAGCTTCTGGAGCttgagagtcacaatata
atcTTTTAGTGGCATTCTCTATTCATACATATCCTGAGACTTAATTTATT
TAGGATCCCTTAGGCAGAGGAGGGATCCTTGTAGTAGGAGCACTGGCtga
ccggtagggttgggagctgtATTAAtgaaggtctgtaaattacacactaT
AAGTATTTAATTTCATCATTTCTGTTCAATAGCAGGGGATATACTTTTTC
AAGAGAATTTCATCTCAGTGAATGTAGTGCTTTGTTTGTTGtacattcaa
ttcaattcaattcaaaacatatttttactCGAAGGAAGGGACACCAAGCT
TAGAAACCTAATTACAAATGGTGCAACCTACGTACCATGGTGCAACATCA
ACAtgacgtacacgttttttttttataaggaaccttaactttgctctgag
cctggagttccttatttttacagagaatttcagcctcaaagttcctaaGG
TATCGagttatttacatagctgctaggTCAAATGAAAATGGGTGGTTTTA
TGGAAACATCGACTATTTCAACAAAGAACTTGGAGAATACAAGATAATTG
CTAGTTCAAGTGAAaactcttactgttccttaagaCTTGTTTTCTTATCC
TCAGCCtgggcagttccttaacaattccttattttttggaccattttcag
cctcgagttccacTTCtggctttcttcagtaaattgaagatgagtaATAA
CCTAAGCCAcagatcacggattgaaacaaatatatttaagggtgggattt
tacagccagcggtcgtgcaaggcactgagaggccatgggtgccaaaaaga
aggtcTATTCaaaatgcggcaacctcattggtagaaatttgataaacagc
tacAAAGGAGCGCTgtgaagcaatcagtagaagagaccactttcgttttt
gttgcagattttgatataaacttctctcagggattacttgtcaatgtaca
tgtacacatgtgttgtgtcaacttgtcagtaTTGTGTTGTTGTAAAGGgg
aagataaaagaggtaagactagcctagtttctaatcctcgTATAGGAGTT
TTAAAAGCTTAGACTGACAAAGTTAACAAAATGGTAGAATAGAGCCNtaa
gactagcctagtttctaatcctcaTATAGGAGTTTTAAAAGCTTAGACtg
acaaagttaaatcaaaacaaaatggtagaatagagctgtgagcggagctg
cgtaattcaattgttttgaaattaattttgctgctttggttggtcagtca
tctgatggctatgcaagtttccctccactgatgcaagttacccgacttca
taGTATGATTTAAAAACCACAGCATAATTTTGGTGTACAGTCTGATGCAT
CTGCTCGCTTCAGTTAGATGCATTGTGCAGTGCATGATCTAGGAAGTTCG
GTGAAAAAACCTAGATATTTACTTAGCTGTTTGTACCCACCAGGGAGAGC
AAATTTTCAGCTGTGTTTGTACAATATTTTAATTCATTTAAAAATGGACC
GAATATATAGCAAAAgcatgaaaaaaattacaactGTGACTTCAAAGAGG
ATATATGAGCTAAGCAATGGATTTCAATTTCTAAACATACTAAAACAGAA
TGTCAGaatcaaatatcaaaaactttgagTAGCCACGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCAATCT
TATTCTTATTGCAGGGATGTTGGTTACATCGTGTATCCTGTAAGGCACTT
ATCAAGATACTCACTGAATGCTTCCTTCGAACTTGAACAGTTGAATTTGA
ATTGTCATTATATTGGATGATATGATTTAGAAGACCTTGGCCATGCacaa
ttaaattttcacaattgACTTACAGCttcattcaaattttcgatGACCAT
GggtttatttcattttgaagagcAATTGTATCAAACAATTTAGGACATAA
TATTCTGCTATGATGTGATAACTTCTTCAGTAAtggagttgaaaaatatt
tggaCATTCAAAATACTTCGTGGTAATTTTTTCAGGAATGATCAAGGGAT
CTTTGAAAAATCAGAGAAGAAAATGTTTAGTTACTTGAATAAAGATTAGA
ATTCTATAGATAACCTTtccttttttcaatgttttatttaaattatcaga
aattattcaaaaaaaggtGAAGTATTGGAAAAGGAATTCAAAAAGCATCG
CTTCAAAATAACTAACTGCCTCTCTACCTATTAGATTTTACTTTGcagct
tgaaaacaaaagatgaGGTAGTAGTTATATGTCTTCTACAATGATGTGAA
GGCTTTGCTGCTATTATCCTGGTTTAGCATGCATCACACGGTTTTGTAAT
TGCCtgttagattttattttttataacatAATTATAATagtattcaagat
tttttagcctttttatatctttatcttAAATATCAATACACTGTTGTTTC
AGTGTTCTTAAATCTCTTATTATAGACCACTTTTCACTTTCAATGGAAGG
TCACCTTTTCTCTCTACAGACCtaataaattttgttagatAGTACAATAC
TATGTAGAAAATTGATTTACCCTTATTACACATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016710-exon-sc0000248-1491911889:21478..21680 | TCONS_00016710-exon-sc0000248-1491911889:21478..21680 | Clytia hemisphaerica | exon |
| TCONS_00016710-exon-sc0000248-1510915933:21478..21680 | TCONS_00016710-exon-sc0000248-1510915933:21478..21680 | Clytia hemisphaerica | exon |
| TCONS_00016710-exon-sc0000248-1575043694:21478..21680 | TCONS_00016710-exon-sc0000248-1575043694:21478..21680 | Clytia hemisphaerica | exon |
| TCONS_00016710-exon-sc0000248-1491911889:24842..25713 | TCONS_00016710-exon-sc0000248-1491911889:24842..25713 | Clytia hemisphaerica | exon |
| TCONS_00016710-exon-sc0000248-1510915933:24842..25713 | TCONS_00016710-exon-sc0000248-1510915933:24842..25713 | Clytia hemisphaerica | exon |
| TCONS_00016710-exon-sc0000248-1575043694:24842..25713 | TCONS_00016710-exon-sc0000248-1575043694:24842..25713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:21478..25713 + |
Blast
The following BLAST results are available for this feature:
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