TCONS_00016711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016711
Unique NameTCONS_00016711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016711 ID=TCONS_00016711|Name=TCONS_00016711|organism=Clytia hemisphaerica|type=transcript|length=366bp
gagaGAGTCGTGGTAGCTGTCTTACTTTAGATttcgatgatgatgatgat
gataataatGATGATAAAGTCGCACCGGAAGAGAAGAACACATTCACGCT
CACATTCGATTCTGATAATGAAAGTGTTTCAGTATCTTCACTGCCTGTTG
TCCATGCCCAAGATAATGATCCTGGTCATAGCGCTGACGAGCCTGGTCCT
AGCTTCGAAACTCCAGATCCAAGTGGCAGGGATCACTTCAATCAAACTAA
TTATAGCGATTCAGAATCAGAGTATAATCATGTGTGTTTTCCTTTACCTT
TAACTCAATACCCAACCGTCATACAGGgtgatatttcaattttgatcttC
GGTTTGTGGTGAGGGG
Run BLAST on NCBI

protein sequence of TCONS_00016711-protein

>TCONS_00016711-protein ID=TCONS_00016711-protein|Name=TCONS_00016711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
ESRGSCLTLDFDDDDDDNNDDKVAPEEKNTFTLTFDSDNESVSVSSLPVV
HAQDNDPGHSADEPGPSFETPDPSGRDHFNQTNYSDSESEYNHVCFPLPL
TQYPTVIQGDISILIFGLW
Run BLAST on NCBI

transcript from alignment at sc0000248:26548..27240+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016711 ID=TCONS_00016711|Name=TCONS_00016711|organism=Clytia hemisphaerica|type=transcript|length=693bp|location=Sequence derived from alignment at sc0000248:26548..27240+ (Clytia hemisphaerica)
gagaGAGTCGTGGTAGCTGTCTTACTTTAGATttcgatgatgatgatgat
gataataatGATGATAAAGTCGCACCGGAAGAGAAGAACACATTCACGCT
CACATTCGATTCTGATAATGAAAGTGTTAGTCGCTTTGTTTGGATCTTTA
ATAAGAGAGCTGAATGAATTTCattatcattttcaatcttgaaattttga
atgtaTTGagcttttgctttaaaaaaatgaacagAGTAAGACtcatttta
gtatttttaaaaCTAAATGCCAGCCTGAGAAAAATTCATCTTTTGATTAT
ACTttgaataatctttttttgctgacttcaaaatattgatCTATATTTTG
CATAATGATATATTACTTCATTTCATTCATATTCTGTATTCTCACCCAAT
GTTAAATcgcatgtttatttttatttataaacctATTTTATATGATTTTT
AGGTTTCAGTATCTTCACTGCCTGTTGTCCATGCCCAAGATAATGATCCT
GGTCATAGCGCTGACGAGCCTGGTCCTAGCTTCGAAACTCCAGATCCAAG
TGGCAGGGATCACTTCAATCAAACTAATTATAGCGATTCAGAATCAGAGT
ATAATCATGTGTGTTTTCCTTTACCTTTAACTCAATACCCAACCGTCATA
CAGGgtgatatttcaattttgatcttCGGTTTGTGGTGAGGGG

Coding sequence (CDS) from alignment at sc0000248:26548..27240+

>TCONS_00016711 ID=TCONS_00016711|Name=TCONS_00016711|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000248:26548..27240+ (Clytia hemisphaerica)
gaGAGTCGTGGTAGCTGTCTTACTTTAGATttcgatgatgatgatgatga
taataatGATGATAAAGTCGCACCGGAAGAGAAGAACACATTCACGCTCA
CATTCGATTCTGATAATGAAAGTGTTTCAGTATCTTCACTGCCTGTTGTC
CATGCCCAAGATAATGATCCTGGTCATAGCGCTGACGAGCCTGGTCCTAG
CTTCGAAACTCCAGATCCAAGTGGCAGGGATCACTTCAATCAAACTAATT
ATAGCGATTCAGAATCAGAGTATAATCATGTGTGTTTTCCTTTACCTTTA
ACTCAATACCCAACCGTCATACAGGgtgatatttcaattttgatcttCGG
TTTGTGGTGAgaGAGTCGTGGTAGCTGTCTTACTTTAGATttcgatgatg
atgatgatgataataatGATGATAAAGTCGCACCGGAAGAGAAGAACACA
TTCACGCTCACATTCGATTCTGATAATGAAAGTGTTTCAGTATCTTCACT
GCCTGTTGTCCATGCCCAAGATAATGATCCTGGTCATAGCGCTGACGAGC
CTGGTCCTAGCTTCGAAACTCCAGATCCAAGTGGCAGGGATCACTTCAAT
CAAACTAATTATAGCGATTCAGAATCAGAGTATAATCATGTGTGTTTTCC
TTTACCTTTAACTCAATACCCAACCGTCATACAGGgtgatatttcaattt
tgatcttCGGTTTGTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009342XLOC_009342Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016711-proteinTCONS_00016711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016711-exon-sc0000248-1491911889:26548..26672TCONS_00016711-exon-sc0000248-1491911889:26548..26672Clytia hemisphaericaexon
TCONS_00016711-exon-sc0000248-1510915933:26548..26672TCONS_00016711-exon-sc0000248-1510915933:26548..26672Clytia hemisphaericaexon
TCONS_00016711-exon-sc0000248-1575043694:26548..26672TCONS_00016711-exon-sc0000248-1575043694:26548..26672Clytia hemisphaericaexon
TCONS_00016711-exon-sc0000248-1491911889:27000..27240TCONS_00016711-exon-sc0000248-1491911889:27000..27240Clytia hemisphaericaexon
TCONS_00016711-exon-sc0000248-1510915933:27000..27240TCONS_00016711-exon-sc0000248-1510915933:27000..27240Clytia hemisphaericaexon
TCONS_00016711-exon-sc0000248-1575043694:27000..27240TCONS_00016711-exon-sc0000248-1575043694:27000..27240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:26548..27240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.903891	0.881437	0	0.250317	1.21895	0.963229	0.290524	1.08794	0.571269	0.471739	0.457882	1.50497	0.450862	0.468225	1.15483	2.20322	2.54455	2.08647	0.720642	0.502734	0.873934	0.319706	0.518192	0.942224	0	0	0	1.32274	0.250812	0.766614
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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