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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016722 ID=TCONS_00016722|Name=TCONS_00016722|organism=Clytia hemisphaerica|type=transcript|length=802bp
GTTCAATCACTGTATGGAAACAAGAAATATGTTTGTTTGTCAATCAAATG
GACTGTCACTTCCTGGATCAAGAATTGAAACACAGGATCAATCATCATGA
AGATCATCATTCTCGCCGCTTTCTTGGCTGTCGCCGCCGCCCTTGAGGTT
GGAACCCAAACTGGTACCACACCACCAGCTGTCCCATGCCCAGACTCCCT
CTGCAAAGGAAGAGCTGATGGAAACTACGAATACTACTACTACAGCCGAT
ACAACCCACACTATTTCCTCCAATGCTCAAACGGATTAGCTTACTGTCAA
GCTTGCTGGCCATTGTCCTTGGAATTCAGTGAACCATGCAACCAATGTTT
GTACAACCGAAAAGACGAATGTGTCACCACACAACCATGGGAACCAGCAA
CCACCTTCGAATGCCCAGACAAGTGCCCAGCCCGTGGACCACACTTCAGT
GGAAACATCGAAGACGACCACAACCCCCATCAATACGTCGCTTGCTTCCA
CGGACAAACTGTCGGATGCATCGCTTGCCCAAGAGGATTACAATTCAACG
AGAAATGGAACGCCTGTTTGTACGAAGGAAAATACAAGACCGAACCAGAA
TCCCCACCAAAACactaaattattattatttttaaatgaaaaatgaaaat
aatttaatttcttaaatttctttttctttcctctCAATCTTTTGTTGTTC
TAActtaatcttttctttttcttccaaatttattttgtaatttatgattt
ttatctGTAATTATTGCGAAATATCTCTACAATCTTTCACCATATTAAAC
AC Run BLAST on NCBI protein sequence of TCONS_00016722-protein >TCONS_00016722-protein ID=TCONS_00016722-protein|Name=TCONS_00016722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MKIIILAAFLAVAAALEVGTQTGTTPPAVPCPDSLCKGRADGNYEYYYYS
RYNPHYFLQCSNGLAYCQACWPLSLEFSEPCNQCLYNRKDECVTTQPWEP
ATTFECPDKCPARGPHFSGNIEDDHNPHQYVACFHGQTVGCIACPRGLQF
NEKWNACLYEGKYKTEPESPPKH Run BLAST on NCBI transcript from alignment at sc0000248:185078..186838+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016722 ID=TCONS_00016722|Name=TCONS_00016722|organism=Clytia hemisphaerica|type=transcript|length=1761bp|location=Sequence derived from alignment at sc0000248:185078..186838+ (Clytia hemisphaerica)
GTTCAATCACTGTATGGAAACAAGAAATATGTTTGTTTGTCAATCAAATG
GACTGTCACTTCCTGGTAAAATATTCCTTGTCTATTGTAGCAACTAGAAG
ATCTGATGCAAATACCATTCAACTGAATTTTGAATCCTTATGAGAAAAAT
CTTCCGATGTAATTAATAATTAGTTACATAACCGCATTCAATTAATTGAC
AGACAAACATAGTAATTGCTAATTACTACAAAATCACATAACTCTAGTTA
ATTATGAAGACTAAAAGATTCTTAAAGATTTGTTCAGGATAGACTCTTTT
TTTGTAAGCACCAGTAGACTTTTGATTAGGCtctgctgttcttatttttt
tttcactttgagcctcaaattgttcttatcctattcttatttatagggtg
aaattgaggtattttctaggccttttacccaatttttactactttgaacc
ctgaattgtttgaaatttaGTAAGTGTAGGCTCAACATTGTTATTATTCT
TTggtgattttgagcctcgttgttcttatagaaaaaaggAGTGTAGAGGA
AATTAGATATTTTATAACACTTTTTAAGATGTTCATATAAATAGAGGTAT
ACGGTGTGGAGACAAATCATTCAAACTTGCAGGATCAAGAATTGAAACAC
AGGATCAATCATCATGAAGATCATCATTCTCGCCGCTTTCTTGGCTGGTA
AGTAATCTTAAATAAATTGCTATTTTGCAAAATACTCTTTTTTTCccaat
cttataagaacaacaaAGCTCAAATATGTCGAAAAGTAAGAacaaataag
aataatgctgaGTCTGGAGGGTCGAAATAGTAAGAACAGGGTATTaaaac
taaaatagttttactctataaataagaacagggtaagaataatttcaggc
tcaaaataccaaaaataataagaacagTCGAGCTTCATCAAAACTGATTA
TTAATAAAGAAGAGAATCtttctttatattttcaaacataatCTTCAAAT
CTAATAAACACATCTACTTTTTGTCGCTCATAGCTGTCTCTAAAACTATT
TTTCAATTTGTAGACGAATCATTACTTTCTATACTTTAGTCGCCGCCGCC
CTTGAGGTTGGAACCCAAACTGGTACCACACCACCAGCTGTCCCATGCCC
AGACTCCCTCTGCAAAGGAAGAGCTGATGGAAACTACGAATACTACTACT
ACAGCCGATACAACCCACACTATTTCCTCCAATGCTCAAACGGATTAGCT
TACTGTCAAGCTTGCTGGCCATTGTCCTTGGAATTCAGTGAACCATGCAA
CCAATGTTTGTACAACCGAAAAGACGAATGTGTCACCACACAACCATGGG
AACCAGCAACCACCTTCGAATGCCCAGACAAGTGCCCAGCCCGTGGACCA
CACTTCAGTGGAAACATCGAAGACGACCACAACCCCCATCAATACGTCGC
TTGCTTCCACGGACAAACTGTCGGATGCATCGCTTGCCCAAGAGGATTAC
AATTCAACGAGAAATGGAACGCCTGTTTGTACGAAGGAAAATACAAGACC
GAACCAGAATCCCCACCAAAACactaaattattattatttttaaatgaaa
aatgaaaataatttaatttcttaaatttctttttctttcctctCAATCTT
TTGTTGTTCTAActtaatcttttctttttcttccaaatttattttgtaat
ttatgatttttatctGTAATTATTGCGAAATATCTCTACAATCTTTCACC
ATATTAAACAC Coding sequence (CDS) from alignment at sc0000248:185078..186838+ >TCONS_00016722 ID=TCONS_00016722|Name=TCONS_00016722|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000248:185078..186838+ (Clytia hemisphaerica)
ATGAAGATCATCATTCTCGCCGCTTTCTTGGCTGTCGCCGCCGCCCTTGA
GGTTGGAACCCAAACTGGTACCACACCACCAGCTGTCCCATGCCCAGACT
CCCTCTGCAAAGGAAGAGCTGATGGAAACTACGAATACTACTACTACAGC
CGATACAACCCACACTATTTCCTCCAATGCTCAAACGGATTAGCTTACTG
TCAAGCTTGCTGGCCATTGTCCTTGGAATTCAGTGAACCATGCAACCAAT
GTTTGTACAACCGAAAAGACGAATGTGTCACCACACAACCATGGGAACCA
GCAACCACCTTCGAATGCCCAGACAAGTGCCCAGCCCGTGGACCACACTT
CAGTGGAAACATCGAAGACGACCACAACCCCCATCAATACGTCGCTTGCT
TCCACGGACAAACTGTCGGATGCATCGCTTGCCCAAGAGGATTACAATTC
AACGAGAAATGGAACGCCTGTTTGTACGAAGGAAAATACAAGACCGAACC
AGAATCCCCACCAAAACactaaATGAAGATCATCATTCTCGCCGCTTTCT
TGGCTGTCGCCGCCGCCCTTGAGGTTGGAACCCAAACTGGTACCACACCA
CCAGCTGTCCCATGCCCAGACTCCCTCTGCAAAGGAAGAGCTGATGGAAA
CTACGAATACTACTACTACAGCCGATACAACCCACACTATTTCCTCCAAT
GCTCAAACGGATTAGCTTACTGTCAAGCTTGCTGGCCATTGTCCTTGGAA
TTCAGTGAACCATGCAACCAATGTTTGTACAACCGAAAAGACGAATGTGT
CACCACACAACCATGGGAACCAGCAACCACCTTCGAATGCCCAGACAAGT
GCCCAGCCCGTGGACCACACTTCAGTGGAAACATCGAAGACGACCACAAC
CCCCATCAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGCATCGC
TTGCCCAAGAGGATTACAATTCAACGAGAAATGGAACGCCTGTTTGTACG
AAGGAAAATACAAGACCGAACCAGAATCCCCACCAAAACactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016722-exon-sc0000248-1491911889:185078..185142 | TCONS_00016722-exon-sc0000248-1491911889:185078..185142 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1510915933:185078..185142 | TCONS_00016722-exon-sc0000248-1510915933:185078..185142 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1575043694:185078..185142 | TCONS_00016722-exon-sc0000248-1575043694:185078..185142 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1491911889:185710..185774 | TCONS_00016722-exon-sc0000248-1491911889:185710..185774 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1510915933:185710..185774 | TCONS_00016722-exon-sc0000248-1510915933:185710..185774 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1575043694:185710..185774 | TCONS_00016722-exon-sc0000248-1575043694:185710..185774 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1491911889:186167..186838 | TCONS_00016722-exon-sc0000248-1491911889:186167..186838 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1510915933:186167..186838 | TCONS_00016722-exon-sc0000248-1510915933:186167..186838 | Clytia hemisphaerica | exon |
| TCONS_00016722-exon-sc0000248-1575043694:186167..186838 | TCONS_00016722-exon-sc0000248-1575043694:186167..186838 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:185078..186838 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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