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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016725 ID=TCONS_00016725|Name=TCONS_00016725|organism=Clytia hemisphaerica|type=transcript|length=340bp
TGAAACAAatatcagcaaaaatttttgaaagatgtgGTGGCGCGCTACAT
CATTGATGACAGAAGACCTTAAGAAATCTTCGAAAGCAAGACTTCCAAAA
GGCTTTCATCGTGGTagaaatcaaattcaaagttttcaacCAGGTCGTGG
AAATACACCAGAAGATGACGAGTTGTGTCAGGTCAAAAAAACGTTAATCA
GTTACAAGGATGTTACTCTTCCTGACAAACTTTACGGTGGCCGAAACACA
AAACCATGCATTGTTTCTGATGATAAAGAATTCTTTCAAAGAAAGATTAT
GAAGGAGTTGAACGTTGGCCCACTGAAATTCGGCATTGCG Run BLAST on NCBI transcript from alignment at sc0000248:254256..258116+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016725 ID=TCONS_00016725|Name=TCONS_00016725|organism=Clytia hemisphaerica|type=transcript|length=3861bp|location=Sequence derived from alignment at sc0000248:254256..258116+ (Clytia hemisphaerica)
TGAAACAAatatcagcaaaaatttttgaaagatgtgGTGGCGCGCTACAT
CATTGATGACAGAAGACCTTAAGAAATCTTCGAAAGCAAGACTTCCAAAA
GGCTTTCATCGTGGTagaaatcaaattcaaagttttcaacCAGGTCGTGG
AAATACACCAGAAGATGACGAGTTGTGTCAGGTCAAAAAAACGTTAATCA
GTTACAAGGATGTTACTCTTCCTGACAAACTTTACGGTGGCCGAAACACA
AAACCATGCATTGTTTCTGATGATAAAGAATTCTTTCAAAGAAAGGTTTG
TTTATAATAGTCCATGATTACAATTTCTAACCCGGAAATTTTGTTCTTTG
GGCCTAAAAATCATAGCCTATTACCCTCCCCACCGCACCGTCCAAAGGAT
TTATGATACGTTCAGCTTATTCCGTTTGTTTGATCGGCAGGTGCTACGCC
GGGTGATGGCTAGTTCTAGCTTTATACTTTAAATCTAATAGCTCTGGTTA
TATACCATATCTTCCACTCCTACTCAACAGTCACCAGCCTAAGTAAGGCA
ACCCCAGTTACCTTGGTTGCAGTAAGTTTGTCGTGACTTTTCGGCTTTAG
AAAGAGAGTCAATGGTTCTTCTTGTGAAGCTGCCGTCTTATTCCGAACCA
TGTTTGCTTTACAATATTACTTTTTATAAAGACTGATTATCAGCTTTGGT
GtgactttcaaagtttttcatgcaaagattgGTGTATTTTGTTACCCCTG
ACACAAGCAAGAAGGGCGTGGCCTCAGCTTAAATAAATTTCGATAGAGTT
CGATTCTTTTACGGGCTGCTGGTTCATATCCGCAAATTCAGACTTCAAAT
GTCTTTCACATTGGTTTTAGATTATGAAGGAGTTGAACGTTGGCCCACTG
GAATTCGACATTGCGATGAGAACTTATCAAAATGTCATCAAAGTTCAGAA
TGAGGAAAAGATACACGAAGGTGCATACGTAGGAGGAGAAGAGAACAAAA
ACCCTCCTTCGAGAGATAGTGAAGTCAGCACAAAAGTAAAGGGAAGCGAA
GATGCTTCTCAAACAAATCATATAGCATTTTTGGACGAACTTCGTACACT
TAAAGGCGATTATAGTAAAATGAAAGGTGACTACGACAACATTGTAGGTA
GAAAAACGGCAGCTGAGATTGAGATCCGGCGATTATCTTTGATTAAAGAA
GAATCCGATCAGGCGCATCATAAAGAGGCGAATGCTTTGCGTAAtacaat
tgaaaatttaaataaacaATTAACAATGGCCCGTGAAGAGGTTGAAGACA
TGAGCGTAGATATCAAAAAATGTGTCGCCGATACTACATCGcagttgaaa
caacattttgaCGCGTTTTTGACCGACGAAAAAGAACAATACCAAATCCT
CCTAGCAGAAAAGGAGGCTAAAATTTGTGGCAAGGATGCTCAGATCTGCG
AAATAAAGGAGCATTTTGAGAGGGAGCTGAATGCCGTGAAAGAAAAAGGA
GCCGAATATTTAGAAAGAATGCTTTCTATTGAAAGAGAAAAATCGGAGCT
TAACCAAGAAACTATCCAAGAGCTTCGTAAAAGCTTGGAAGCTGAGCAGA
TGAGACTCCTTGATGCACAGCACTCCTTTCGACAACAAACGGAGTTAGTC
AATGCCCAGGCTTCTCAAATCACAGAATTGAATGACAAGAAAGCTGTCAT
CAAGAAGAAATTGTTTAAGGCTACCAAAGAGATCAAGGAAGCTAACGACA
AGGGCATCAAGGGTCACGAAGTGGTTAACAAGCAACAACTTGAGCTGGAT
GATTTAAAGGCGATGAATGAGAAATTGAGAAAAGATAATGAAGAAAGGCG
TAAAAAACATATTGAAGAACTGACGCTAAAAGAGGGCGAGCTGGTTAAGA
TGTGCAACAGTTTTAAAGAGCAAATCAACATCGAGGAACAAAATATGGGA
TCGATCAAGACAGAGAACGAAGGATTGAAAATAGCACAAGTTGAATCTGA
ATTAATCCATGCAGCTGAAATGGCGAAACAGAATGAGGCTTTGCTCAGTC
TGAAAAACGCTCAGAAGGACGAGATTTGTGAAGCCAGGGAACAGCTTGAG
CAGTTGAAAAAGGAAGCCAACCAGACGGATTCGATGCATCAAGAGGCATT
GGCCACAAAAGATGACAACTTGGAAGAATCTGAATTGACGATTGCtttct
tacaaaaagaaaaaacgatCTGTGAAAAGAAACTAGAGACTGCATCGAAT
AGTGTTCTCCGTTTGGAGAAGAGATTAAACCAACGCGAAGTCGAGATTCG
TGCTCGTTTGGAAGATATTTCCGCACATAAGAAGAAAGTAAATGCAACCC
AAGCTATTATCGAAAAACAAAAGGTATCCATGGAGAGAATTCAGAACGAT
ATGAAACGTGAAAAGAAGAGGATCGAAGCTTTGATCCGTGAACGCAATGC
TTACAGAGAAGAGGTAAGATCagtttttattcaataaacTGCCTTCGATC
AACATCAATAAAGATAGCTAGGTTGTACGAGTCTCCAAGACAATAAAGTC
AGGGGGAGCCCTAGGAAAAACTCTACCTTGTaaattgtaaaccgaacaaa
gagcggttcGTAGAGAACTAGCATTATTATATTATAATATTCGCTAAGCA
AATAATTGTTATTAATAGGAATGTTTACACTCTAATAAGGTTTATTTTTA
GGCCACAGGGTATTTTCGTTGAACATTTCGTATGGAGAGCCGTAAAGGTC
CTCGAAAATGGTTAAAAAGGTCTCGATTATGTCAGCGTTATCgtaatttt
aatcaaaataatgttttcagGCTCATACAAATAGCATAAAGAAAATTGAG
ACTAACAAAAAGCTCGAGGCAACCAAAGAACACTTGCAAACGATCAAGAA
AGATTATGAAGATAAAATTGCTCAAATGCAAAGTATGCAAGACAGGGAGG
CAGCAGGCAAGCAAAAGCAAAGGAAACGCAAGAGAAAATCTAAACAAGCN
TGCCAAGATAGGGAGACAGTAGGCAAGCAAAAGCAAAGGAAACGCAAGAG
AAAATCTAAACAAGCTGCTTCCAGCGACATTGAAGCAAATACTGTTGCTA
CAAAATCTAATAAAGAGATTCCAAAGCCACAAGAAGCAAAGGGTAACAAT
ACGAACAAAGATCGACCAAAGAAGTCAGACCTAGACAATGACAAGATCCA
GAAAGTCAATAAAGTTCAAAAAAGGTATCTAAGCTAATCAATAATAGGTA
GGGACTTGGGTTACACGAGTTCACTTGTTTTCTCTCCGCTTCTACACATT
TTCAATTCATACTAATAGCCCTTACCAATTTAACTTTTTAACAGTCGTTC
GATTGGTAAAAAATTCTTTCTATTAAACATCAttacaatttattttatag
taCTGCTCAGCAAAAAAGTCCATcgaaaatatctaaaaacattATTGTGA
ACACTTCAGACGTTCTTTTCGACCAATGCGACACCGAAAGACCGTGGAGC
GTGTATGACACTTCACTTGTCACCTTTTGTATCGGAGTATGGTTTCTACT
CATCAAGGTCTGCAGCATTGTCACCAACGATGATTCACTCTGGTAGTGAC
GTCATCTTCAATATGTATACATTTGTAAATAATTTCTAATcctggatttt
tttatattactttctatcacttttatttttatttatgtaaattattttct
aaaaactaacccaaaaaaacttaaaaaacgcTAAAGCTTCTTTCATTctc
aaaaacactttttggtcttCTGTATTGGTCAAATGAAATACCTAAAAGAA
GTTGAATTGAATTTAGATTATGAAGGAGTTGAACGTTGGCCCACTGAAAT
TCGGCATTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016725-exon-sc0000248-1491911889:254256..254550 | TCONS_00016725-exon-sc0000248-1491911889:254256..254550 | Clytia hemisphaerica | exon |
| TCONS_00016725-exon-sc0000248-1510915933:254256..254550 | TCONS_00016725-exon-sc0000248-1510915933:254256..254550 | Clytia hemisphaerica | exon |
| TCONS_00016725-exon-sc0000248-1575043694:254256..254550 | TCONS_00016725-exon-sc0000248-1575043694:254256..254550 | Clytia hemisphaerica | exon |
| TCONS_00016725-exon-sc0000248-1491911889:258072..258116 | TCONS_00016725-exon-sc0000248-1491911889:258072..258116 | Clytia hemisphaerica | exon |
| TCONS_00016725-exon-sc0000248-1510915933:258072..258116 | TCONS_00016725-exon-sc0000248-1510915933:258072..258116 | Clytia hemisphaerica | exon |
| TCONS_00016725-exon-sc0000248-1575043694:258072..258116 | TCONS_00016725-exon-sc0000248-1575043694:258072..258116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:254256..258116 + |
Blast
The following BLAST results are available for this feature:
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