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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016726 ID=TCONS_00016726|Name=TCONS_00016726|organism=Clytia hemisphaerica|type=transcript|length=732bp
GTTAAGATGTGCAACAGTTTTAAAGAGCAAATCAACATCGAGGAACAAAA
TATGGGATCGATCAAGACAGAGAACGAAGGATTGAAAATAGCACAAGTTG
AATCTGAATTAATCCATGCAGCTGAAATGGCGAAACAGAATGAGGCTTTG
CTCAGTCTGAAAAACGCTCAGAAGGACGAGATTTGTGAAGCCAGGGAACA
GCTTGAGCAGTTGAAAAAGGAAGCCAACCAGACGGATTCGATGCATCAAG
AGGCATTGGCCACAAAAGATGACAACTTGGAAGAATCTGAATTGACGATT
GCtttcttacaaaaagaaaaaacgatCTGTGAAAAGAAACTAGAGACTGC
ATCGAATAGTGTTCTCCGTTTGGAGAAGAGATTAAACCAACGCGAAGTCG
AGATTCGTGCTCGTTTGGAAGATATTTCCGCACATAAGAAGAAAGTAAAT
GCAACCCAAGCTATTATCGAAAAACAAAAGGTATCCATGGAGAGAATTCA
GAACGATATGAAACGTGAAAAGAAGAGGATCGAAGCTTTGATCCGTGAAC
GCAATGCTTACAGAGAAGAGGCTCATACAAATAGCATAAAGAAAATTGAG
ACTAACAAAAAGCTCGAGGCAACCAAAGAACACTTGCAAACGATCAAGAA
AGATTATGAAGATAAAATTGCTCAAATGCAAAGTATGCAAGACAGGGAGG
CAGCAGGCAAGCAAAAGCAAAGGAAACGCAAG Run BLAST on NCBI protein sequence of TCONS_00016726-protein >TCONS_00016726-protein ID=TCONS_00016726-protein|Name=TCONS_00016726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
VKMCNSFKEQINIEEQNMGSIKTENEGLKIAQVESELIHAAEMAKQNEAL
LSLKNAQKDEICEAREQLEQLKKEANQTDSMHQEALATKDDNLEESELTI
AFLQKEKTICEKKLETASNSVLRLEKRLNQREVEIRARLEDISAHKKKVN
ATQAIIEKQKVSMERIQNDMKREKKRIEALIRERNAYREEAHTNSIKKIE
TNKKLEATKEHLQTIKKDYEDKIAQMQSMQDREAAGKQKQRKRK Run BLAST on NCBI transcript from alignment at sc0000248:256149..257237+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016726 ID=TCONS_00016726|Name=TCONS_00016726|organism=Clytia hemisphaerica|type=transcript|length=1089bp|location=Sequence derived from alignment at sc0000248:256149..257237+ (Clytia hemisphaerica)
GTTAAGATGTGCAACAGTTTTAAAGAGCAAATCAACATCGAGGAACAAAA
TATGGGATCGATCAAGACAGAGAACGAAGGATTGAAAATAGCACAAGTTG
AATCTGAATTAATCCATGCAGCTGAAATGGCGAAACAGAATGAGGCTTTG
CTCAGTCTGAAAAACGCTCAGAAGGACGAGATTTGTGAAGCCAGGGAACA
GCTTGAGCAGTTGAAAAAGGAAGCCAACCAGACGGATTCGATGCATCAAG
AGGCATTGGCCACAAAAGATGACAACTTGGAAGAATCTGAATTGACGATT
GCtttcttacaaaaagaaaaaacgatCTGTGAAAAGAAACTAGAGACTGC
ATCGAATAGTGTTCTCCGTTTGGAGAAGAGATTAAACCAACGCGAAGTCG
AGATTCGTGCTCGTTTGGAAGATATTTCCGCACATAAGAAGAAAGTAAAT
GCAACCCAAGCTATTATCGAAAAACAAAAGGTATCCATGGAGAGAATTCA
GAACGATATGAAACGTGAAAAGAAGAGGATCGAAGCTTTGATCCGTGAAC
GCAATGCTTACAGAGAAGAGGTAAGATCagtttttattcaataaacTGCC
TTCGATCAACATCAATAAAGATAGCTAGGTTGTACGAGTCTCCAAGACAA
TAAAGTCAGGGGGAGCCCTAGGAAAAACTCTACCTTGTaaattgtaaacc
gaacaaagagcggttcGTAGAGAACTAGCATTATTATATTATAATATTCG
CTAAGCAAATAATTGTTATTAATAGGAATGTTTACACTCTAATAAGGTTT
ATTTTTAGGCCACAGGGTATTTTCGTTGAACATTTCGTATGGAGAGCCGT
AAAGGTCCTCGAAAATGGTTAAAAAGGTCTCGATTATGTCAGCGTTATCg
taattttaatcaaaataatgttttcagGCTCATACAAATAGCATAAAGAA
AATTGAGACTAACAAAAAGCTCGAGGCAACCAAAGAACACTTGCAAACGA
TCAAGAAAGATTATGAAGATAAAATTGCTCAAATGCAAAGTATGCAAGAC
AGGGAGGCAGCAGGCAAGCAAAAGCAAAGGAAACGCAAG Coding sequence (CDS) from alignment at sc0000248:256149..257237+ >TCONS_00016726 ID=TCONS_00016726|Name=TCONS_00016726|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at sc0000248:256149..257237+ (Clytia hemisphaerica)
GTTAAGATGTGCAACAGTTTTAAAGAGCAAATCAACATCGAGGAACAAAA
TATGGGATCGATCAAGACAGAGAACGAAGGATTGAAAATAGCACAAGTTG
AATCTGAATTAATCCATGCAGCTGAAATGGCGAAACAGAATGAGGCTTTG
CTCAGTCTGAAAAACGCTCAGAAGGACGAGATTTGTGAAGCCAGGGAACA
GCTTGAGCAGTTGAAAAAGGAAGCCAACCAGACGGATTCGATGCATCAAG
AGGCATTGGCCACAAAAGATGACAACTTGGAAGAATCTGAATTGACGATT
GCtttcttacaaaaagaaaaaacgatCTGTGAAAAGAAACTAGAGACTGC
ATCGAATAGTGTTCTCCGTTTGGAGAAGAGATTAAACCAACGCGAAGTCG
AGATTCGTGCTCGTTTGGAAGATATTTCCGCACATAAGAAGAAAGTAAAT
GCAACCCAAGCTATTATCGAAAAACAAAAGGTATCCATGGAGAGAATTCA
GAACGATATGAAACGTGAAAAGAAGAGGATCGAAGCTTTGATCCGTGAAC
GCAATGCTTACAGAGAAGAGGCTCATACAAATAGCATAAAGAAAATTGAG
ACTAACAAAAAGCTCGAGGCAACCAAAGAACACTTGCAAACGATCAAGAA
AGATTATGAAGATAAAATTGCTCAAATGCAAAGTATGCAAGACAGGGAGG
CAGCAGGCAAGCAAAAGCAAAGGAAACGCAAGGTTAAGATGTGCAACAGT
TTTAAAGAGCAAATCAACATCGAGGAACAAAATATGGGATCGATCAAGAC
AGAGAACGAAGGATTGAAAATAGCACAAGTTGAATCTGAATTAATCCATG
CAGCTGAAATGGCGAAACAGAATGAGGCTTTGCTCAGTCTGAAAAACGCT
CAGAAGGACGAGATTTGTGAAGCCAGGGAACAGCTTGAGCAGTTGAAAAA
GGAAGCCAACCAGACGGATTCGATGCATCAAGAGGCATTGGCCACAAAAG
ATGACAACTTGGAAGAATCTGAATTGACGATTGCtttcttacaaaaagaa
aaaacgatCTGTGAAAAGAAACTAGAGACTGCATCGAATAGTGTTCTCCG
TTTGGAGAAGAGATTAAACCAACGCGAAGTCGAGATTCGTGCTCGTTTGG
AAGATATTTCCGCACATAAGAAGAAAGTAAATGCAACCCAAGCTATTATC
GAAAAACAAAAGGTATCCATGGAGAGAATTCAGAACGATATGAAACGTGA
AAAGAAGAGGATCGAAGCTTTGATCCGTGAACGCAATGCTTACAGAGAAG
AGGCTCATACAAATAGCATAAAGAAAATTGAGACTAACAAAAAGCTCGAG
GCAACCAAAGAACACTTGCAAACGATCAAGAAAGATTATGAAGATAAAAT
TGCTCAAATGCAAAGTATGCAAGACAGGGAGGCAGCAGGCAAGCAAAAGC
AAAGGAAACGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016726-exon-sc0000248-1491911889:256149..256718 | TCONS_00016726-exon-sc0000248-1491911889:256149..256718 | Clytia hemisphaerica | exon |
| TCONS_00016726-exon-sc0000248-1510915933:256149..256718 | TCONS_00016726-exon-sc0000248-1510915933:256149..256718 | Clytia hemisphaerica | exon |
| TCONS_00016726-exon-sc0000248-1575043694:256149..256718 | TCONS_00016726-exon-sc0000248-1575043694:256149..256718 | Clytia hemisphaerica | exon |
| TCONS_00016726-exon-sc0000248-1491911889:257076..257237 | TCONS_00016726-exon-sc0000248-1491911889:257076..257237 | Clytia hemisphaerica | exon |
| TCONS_00016726-exon-sc0000248-1510915933:257076..257237 | TCONS_00016726-exon-sc0000248-1510915933:257076..257237 | Clytia hemisphaerica | exon |
| TCONS_00016726-exon-sc0000248-1575043694:257076..257237 | TCONS_00016726-exon-sc0000248-1575043694:257076..257237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:256149..257237 + |
Blast
The following BLAST results are available for this feature:
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