TCONS_00016729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016729
Unique NameTCONS_00016729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016729 ID=TCONS_00016729|Name=TCONS_00016729|organism=Clytia hemisphaerica|type=transcript|length=2552bp
CGACTACAAGAAGATGCATCCGATTTTACACATTTCCAATTGAAACCAAC
ATCTGATGCACAAGTTGGGTTTGCTTCTCCAGTCCTAGATGTCAGCAGTC
TTAGTGCATTAGAAGTTACTTTCGATTATGTCTTATTTGGTAGAGATGTT
GGCTCTATTTATGTTGTCATGGACGGGAAACTGGCAACCGATAGTACTGA
TACCTTCAACCAAATCAAACCTATCAACGCAAACGCATTGAAAAACACTC
CAACACGTCAAGAAGTCTTTTTTAAAGGTGGTAACACAAACATCAACACG
TGGAattatgatttcaaaaatattttcgatgTCACCAATTTAGTAGAAGC
ACagATTACAATCCAATTTTTGAGATTGAATGTAACAACAAGAAGTATCC
GTGATGATTTGAGTATCATTACAATTGATACATTTCAAGTAGCAGCTTCA
ACTGTCCTTCCCTCTACCACTGCTCCTCCAACAACGGTAGCTCCAACCAC
AGCTGTCCCTACCACTGCTGCCCCTACAACTGCTGCCCCCACCACGGCTG
CCCCTACAACTGCTGCCCCTACCACGGCTGCCCCAACTACAGCTGCCCCT
ACCACAGCTGCCCCTACCACGGCTGCTCCTACCACTGCAGCCCCAACAAC
GGCTGCCCCTACAACTGCTGCCCCCACCACGACTGCCCCTACAACTGCTG
CCCCCACCACGGCTGCCCCTACAACTGCTGCCCCCACCACGGCTGCCCCT
ACAACTGCTGCCCCTACCACTGCTGCTCCAACTACAGCTGCTCCTACCAC
TGCAGCCCCTACAACTGCCCCTCCAACAACAGCTCCTCCAACGACGGCTG
CTCCTACCACTACAGATGCCTCAGGTTGGGAATCTTGGAGCGAATGGAGC
GTTTGTAATGTTGAATGTGGACCTGGTAACCAAACCAGAAATAGAACTTG
TCAATCAGGTCAAACTTGTACAGGTCTCTCTGAAGAAACTCAACCTTGCG
TAGGAGCAAGTGTTCTTTGCAATGGACAATGGGGACCTTGGGGTACATTT
TCCGCATGCTCTGGTACATGTGGTAACCGGACACGTGTATCAAAGCGGGT
ATGCCCGAATAGTGGAGTGCCACCATGCGATGGTAGTGATACAAAGATTG
AAGCTTGTGTTGAAGGAGAATGCTTCAAAGAATCATGCGACGgtTATGAT
GGTCAATACAGCTGCACATTCGATGAAAGTTATAATCAAAATCAAGATGG
ATTTTGCCAAAGTAACAATTTCGATGGATGGGCTTCTTATGGATTCATGG
TACACTCAGGAAACACACCAAGTGCTGATACAGGCCCATCAAATGACCat
actttcaaaaaaaGTTGTGGTAGTTACATTTATTACGAATCCTCCCAACA
ATCGTACGGTGTTTTGGCCTCCGGTACCTTCATGAGTACCTCGGGACAGA
TGTGTCTATCCTTTGCATTATCAATGTACAGCAAGATCAAAACAGACATG
GGAGTTTTAAATATTGCCTTACTAAAAGAAGACCTTAGCTTTGTCAAAAC
ATTGTGGACTCAAGATGGGGCGGTTTCGGACACGCCTGAAGATTGGCGAA
TGTTATCCGTTCCCGTTGATGGATTAACACAAAACATGAAATACCGAATT
GCTTTTGTTGCAACTCGAATGAACGAAAACAGTGATATTGCAATCGATGA
CTTCAAACTGATGGAAGGAAATTGCACTCAAGAAGTGGATGGACAATGGG
CATCATGGGGCCAATGGGGCCAGTGTGATAAAGAATGTGGTGAATCAGTT
CGAACAAGAATGAGATTCTGTACAGAGCCAGCACCCTCCGCCAATGGTAA
ACAATGTCCAAATCAACTGACTGATTGGTATCAAAATGAAGACTGTCATC
TGCCTGCTTGTAAAGttCATGGCGCTTGGACAAACTGGTTCGATTGGGGA
GAGTGCGACAAAAAGTGTGGTAACGGAACACGTATTCGTGTCCGTGAATG
TGCAAATCCTGCACCAGTCAATGGTGGTGATCATTGTTTGGATCTCAGTG
ATAATGCACGAAAATTGAGTGATACTGAAGATGAGCCNATGTTTGGATCT
CAGTGATAATGTACGAAAATTGAGTGATACTGAAGATGAGCCATGTAATA
CACACCCATGCAAAAAGTGTTAAGATTTTGAATTGAAATACTGTACACTT
TTTTATACATAATAAGTCTACTTTGTCAACTATGCTATTTTTTCCTATTT
TAAAACATTGAATTACAACTGACATTATTCTCcttttaaaaacctttact
tatttttataaatattgtTTGTAAAATCGTTGAGACGTAGAGATGCGTAC
TCTCCcgattctttttaataataaaccttttaacttgcaataaataaaat
acataTATTAAAAGTTAGCAAATCTTTTCCAAATAATGATggtacacgtc
ttttttttttaaagaaactagttttaccaagcagcctcaatgtttcttaa
gaaatcggccttttgagccttaaatgtttcttacatgtttctaaactttt
tg
Run BLAST on NCBI

transcript from alignment at sc0000248:278752..292813+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016729 ID=TCONS_00016729|Name=TCONS_00016729|organism=Clytia hemisphaerica|type=transcript|length=14062bp|location=Sequence derived from alignment at sc0000248:278752..292813+ (Clytia hemisphaerica)
CGACTACAAGAAGATGCATCCGATTTTACACATTTCCAATTGAAACCAAC
ATCTGATGCACAAGTTGGGTTTGCTTCTCCAGTCCTAGATGTCAGCAGTC
TTAGTGCATTAGAAGTTACTTTCGATTATGTCTTATTTGGTAGAGATGTT
GGCTCTATTTGTAAGTGCAATTATCTACATTTCGCCTCCCTTTTTTACAT
TTCGCCtcccttttttatattttcgacTCTCTACTTTACAGactttcgcg
aacagaaacttATACGAGATTGAAAAATCTACGATATATTATtcactttc
gcgaatttaaagaaaaatatttcttgaattgGATTGAAACTTTTGCTTTC
TGACTTATAAGGATttaacaggctaaaaagtgccatgaaacttacatatt
attttttaagttagaaGTTTCTATTTTATCAAGAATTTCTCGCGAGCATT
AAGTTTCGAGAATAGCACTTtctagaattttcaaagacatttactttcgc
aaaagCCGCGAAGTTTCTTCTCGCTAAAGTTTGTACCCCTAAAGTAATTT
TCTTTAATTACAACTCTAAGACTTGGAGAAACATGAAGTTATTTCTGCCC
TGCTAGGACCAATGAAGTAAANcaaaaaaaattcaaataatttaCCTGGA
TCTTAATTCGAATTCCCATCCTCCTTGGTTTACATCAGGTTTACCCGAAG
GCCCCTCTATCGATAGCTAATTTACCCACTTATTCTAGATCCTTCTCTTT
AATTGCTTAGCGTCAAGCAGGAAGGCATCAAGTACTTTTTTTGTACTAAG
tacgaagtctttggtatgactgTGGAATGTGGTGAACTGTAATACTTTTA
TTGATTTGCAGGACGACTACAAGAAGATGCATCCGATTTTACACATTTCC
AATTGAAACCAACATCTGATGCACAAGTTGGGTTTGCTTCTCCAGTCCTA
GATGTCAGCAGTCTTAGTGCATTAGAAGTTACTTTCGATTATGTCTTATT
TGGTAGAGATGTTGGCTCTATTTGTAAGTGCAATTATCTACATTTCGCCT
CCCTTTTTTACATTTCGCCtcccttttttatattttcgacTCTCTACTTT
ACAGactttcgcgaacagaaacttATACGAGATTGAAAAATCTACGATAT
ATTATtcactttcgcgaatttaaagaaaaatatttcttgaattgGATTGA
AACTTTTGCTTTCTGACTTATAAGGATttaacaggctaaaaagtgccatg
aaacttacatattattttttaagttagaaGTTTCTATTTTATCAAGAATT
TCTCGCGAGCATTAAGTTTCGAGAATAGCACTTtctagaattttcaaaga
catttactttcgcaaaagCCGCGAAGTTTCTTCTCGCTAAAGTTTGTACC
CCTAAAGTAATTTTCTTTAATTACAACTCTAAGACTTGGAGAAACATGAA
GTTATTTCTGCCCTGCTAggaccaatgaagtaaaagcccAAAAGGCTAGA
ACCGAACCTTTaccctttctcaggcaagagtgACGCCTTAGAATATACGC
CCTATTTTTATTAGCGGTTTCTCTGTTTTCGAGtggtatatttttgaaat
ctagcgggaaattttacttttaatttgTATAAAAGTCACGCGCGTCTTTC
AAAGCCGCAtaacttaggtaggatttagTGGCTTCAAATCATACCTTGGA
GATACCCTTCTAGCCTTTCGGATTAATACTTCATTTTCtgagaaattgat
aaaaattttcattcctATACTGTGGGAAAAATTCTCACCGCGCCTGTGAG
ACAAAGGTGTCAAAGGAAACCAAGCACTCATATTAAATCCTTTCCTTTTA
GATGTTGTCATGGACGGGAAACTGGCAACCGATAGTACTGATACCTTCAA
CCAAATCAAACCTATCAACGCAAACGCATTGAAAAACACTCCAACACGTC
AAGAAGTCTTTTTTAAAGGTGGTAACACAAACATCAACACGTGGAattat
gatttcaaaaatattttcgatgTCACCAATTTAGTAGAAGCACaggtaaa
aatattgcaaatatctCAATTCTATTTGTGTACTTATTTGTTTAGAAACT
CTACATTTTACCTCTCTCTACAATGAGTTAGAATATGTAGTTTTATTATT
aagattttttctataaaaCTCGAACCAAAACTAGCTAAAATCTATGCTAG
GCTGTCCCAGGGTCTTTTGATAGCAGACATGGCAACAGACAGACAGGTCA
GATGACTGTAGTTGAATTTGGGAGCCAAAAGTAGTCAATGGCCTCAAATA
AAAAGTAATGGAACACCTTATAATGTTTAACACAAGAAGGGTCAGGCATT
ATCATAGTCTTTTTCAGcacaatttatttattattgtaTTTACAGATTAC
AATCCAATTTTTGAGATTGAATGTAACAACAAGAAGTATCCGTGATGATT
TGAGTATCATTACAATTGATACATTTCAAGTAGCAGCTTCAACTGTCCTT
CCCTCTACCACTGCTCCTCCAACAACGGTAGCTCCAACCACAGCTGTCCC
TACCACTGCTGCCCCTACAACTGCTGCCCCCACCACGGCTGCCCCTACAA
CTGCTGCCCCTACCACGGCTGCCCCAACTACAGCTGCCCCTACCACAGCT
GCCCCTACCACGGCTGCTCCTACCACTGCAGCCCCAACAACGGCTGCCCC
TACAACTGCTGCCCCCACCACGACTGCCCCTACAACTGCTGCCCCCACCA
CGGCTGCCCCTACAACTGCTGCCCCCACCACGGCTGCCCCTACAACTGCT
GCCCCTACCACTGCTGCTCCAACTACAGCTGCTCCTACCACTGCAGCCCC
TACAACTGCCCCTCCAACAACAGCTCCTCCAACGACGGCTGCTCCTACCA
CTACAGATGGTAAGTTCCAGTCtatttaaaaaagctttttcgTTAATTGA
AGAAACGTTCTTATTTTGGACAGACAGACAagcagacagacagacagaca
gagaGCGGCAGCGCCATTTCTTATCCTCTCTTCCAAAATCTCTGGCCTCA
GATATTTCATTATTCGAACAAACCGGAGGCTAATTGTTACAAAGGGATAT
TTTAGTTAGCTACTGGGATAGCAATCAATGACGCTTTTCAGTTTTTACaa
tggaaaaatattattttttcaaatttttggttaAGCCTATTAACCCCaag
cttttttcatttttgtatcccaaggggggggggggggggaatctACCACC
CTCTATTACTTTtcatctagaagagctatggccatgaaatttggcacaga
ttttcttcatcaagacacaaatttccaggaagaaaaaaaatttatgacgt
cattcaaaaagcAATGAcatcatcacaaaatttccacctgtcggtaaaaa
agcccaaatatatggtttacaaaaatgtctgtcacagtcgaaccaataaa
gatatttagattcaGTTTGAAGATTCTGATAAAAGGCTTTCCTTTAAtta
taattgccggttttgtattttctatgaagattttttatttttcaaattca
cattgtcaatttttatcacgtgtcaaaatttgaaaatgattgaataaata
gttgccaagttatcagcactttaaaatgtTGAGTTTATAGCGATTTTAGC
TGAGTtatatgtcatgtttcacaataatgtcataaaacctgatctggacg
aCCTATAACCCTAAAATTTCGCACAattactcttaataagattttataaa
aatcagaaagtttcatGTCGATTATATACACgagatatacacaaaagaac
tccagtATGGTAGATTCccggggggcagctgggcaaaaggaccgacgggt
atgtgcgggtcctacgggtaccttttccaatatgtttaaaatgcactgta
agggtcggaaaaactagagatgcactgtaagggtagaaatttcagaaaat
tcttgaaaaatctagatattttgaccaaaaatgctagaatttttgCAGTT
CAGTTCCagtttttgcacgaaagggatcgaaaatttgggggaaaatgcac
tctaagggtatgattttcactgatttttgctgcactgtaggggtgcaatt
ttaaaagccaatttttggcccgcacataccgtcagtccgcaaacccagtg
ccccccgggggtagattctacccccccgggctaatagggttaagactGTG
ATGATTTTTATCATGTTATCGATATCATGGGGTAGGGTTGTTGCAATAGA
AATACGTTATGATAATGTGTTTATTATTGGaatagaaaagagaaaagagg
taAGTCGAACCTAGCCCAATTGTCAGCTGCCAGGGGGCATAAAAAGAATG
TGAGAGATTATttgtatcaaaaacaaaacacacgGTATTTACCAAGCTGC
TAAAATGGTCAAGTTGATGCGAACCAGAAAATCTCAACAACTCCAGTTTC
AATGAAGCAAGGTCTCTATATTTCTCTGTCGACATTAATTTTCAATAGAT
ATAGTTCCTTCCAATCGATAGCCCGATCATATCACACCATGTGCGATGCT
TGCAAAACTTTTTCTTGACTTTGAATTTGTGTACCATCTACATTTATTGT
TGACATACATAAAAAGTCACTCACTAAAAATAAAGTctaaaagtttttta
agaacAAGGTAAAGAGAGAAAACAATGAAAGCAATGCTTGAGAGATATCA
CTCATAGccttatgaaaacttgagcaaagatctagaagatttgaaaaatg
ttgaaagaGGCTTCAAAGCAAAATTCACCACAGAataaaaatatgctttt
caaagaaaatgttaagaaagtATGATAAGCAACCTCGAtggcttcgaccg
ccatcttgaaaaCTCTTGGTGTCTATGGAGCGCAGAAGtcgaaaatatag
cttttatagccagtatcaaACTTTGGCCGGCTTCTTGCTTCTCCGGCAAC
ATTAAGAAGTGTGATACTGATTTTACGCAACGTTTCTAAAAAAACGGGCA
GACTGACTGACACACAAAAGGAAGGAAGGACAGAAACACAAATGAAAACC
CTATCGCTAGCGTTGGGCCAATTATTGCTTTGACGTACACAAAAATAGAA
ACAATTTATTGCCATTCGAAGACAATATTGTAAGCTTGAACCCAATCTCT
ATGTCGATCTATTGATTTGATTGGCCAATGGTTTACAAACTAAAGCCTAT
TCGCTTTGAGTTTGTATGTATTCTTTTTTGCTAACGTGTGGGAACCTCTC
TTATCGTGATAACACTGGTATGGTTTCCACGTGATATCAAAGAAGAgcgt
atacacgtttttttataagaacataaggctttcatggcaaaaatgttaga
gtaagttaagaacattttaaggctttgtagactccAAAATACCTAACGCC
TAATTTCTTAAGGAaagggacaaaaatactcatggcaaaaataagaacat
gctaataacacttttaggcttaaaactcaaaaagttacgaacatccgaag
gtttcaaaaattttgaatgttataataaaaataaaatgtactCAAATTGA
ATGTACTTTATATAATCATTATCTTCTTTCAGCCTCAGGTTGGGAATCTT
GGAGCGAATGGAGCGTTTGTAATGTTGAATGTGGACCTGGTAACCAAACC
AGAAATAGAACTTGTCAATCAGGTCAAACTTGTACAGGTCTCTCTGAAGA
AACTCAACCTTGCGTAGGGGCAAGTGTTCTTTGCAGTAAGTCAAATCTTG
GATTCCAACATTAAGTTAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgaaaatgtataacatgccatagttttgttggttacatca
gtcagaaaacacattttaaacacggcaattatgaaaaattcactatggtc
agagcccttaacgtGTGGGAAACTCTCTTATCGTGATAACACTGGTATGG
TTTCCACGTGATATCAAAGAAGAgcgcatacacgtttttttataagaaca
aactatttaagaacataaggcttcaatggccaaaatgttagagtaagtta
agaacattttaaggctttgtagactccAAAACACCTAACGCCTAATTTCT
TAAGGAaagggacaaaaatactcatggcaaaaataagaacatgctaataA
CACTTTTaggcgaggggtaaatcacttgaaaaaaggtgtacgatactttt
tgactttttgacttttttttgacttttttcaaactttcattttgactttt
ttccgacaaaaacgcccaccgccttcgGGCGCCCAACATCTTCCGcccaa
atctgtccaaaaacgccaaccgcccataaattttgctccacccatccgcc
cattcaagaaacttttttgactttttcaagactttttttggacttttatt
tgactttttgacttttttctaagaatttttgactttttctttgacttttt
gactttttctttgactttttgactttttttttgacttttttgactttttt
tttgactttttgtagaggtgtacgataatttttcgagtgatttacccctc
ccttttaggcttaaaactcaaaaagttacgaacatccgaagatttcaaaa
attttgaatgttataaaaaaaattaaatgtacTCAAAGTGAATGTACTTT
ATATAATTATTATCTTCTTTCAGCTTCAGGTTGGGAGCCTTGGAGCGAAT
GGAGCGTTTGTAATGTTGAATGTGGACCTGGTAACCAAACAAGAAATAGA
ACTTGTCAATCAGGTCAAACTTGTACAGGTCTCTCTGAAGAAACTCAACC
TTGCGTAGGAGCAAGTGTTCTTTGCAGTAAGTCAAATCTTGGATTCCAAC
ATTAAGTTAAACTCTGGGCcggcgaatcaattttgaaagtggaggggcca
aatagtaagtgtctaaggaggcgtcaccatggttggcgccgacgggcctt
tcttagcaaaaaagtgcccccccccccagtttcGCCGGTCCTGAAACTTA
ATAACTACTTTGCCCTGTCTAAAATTTTCATCATAATTTTcgtaataaca
ataataatttgTTACTTTTATCAAACTTTGTTTAAAACACTCACTTTTTG
TCTCtctaaattcacttttttatacGAATTTAGTCTCTCAAAAATTTGTT
AGTCAGCTTCGCACATACATATTAGGGGTAAAACAATGACTTAAACAACT
CACGAAAGACCTCAAAAAACCATTAGAAAAATGATTAGAAATCTAAATTT
GACAGTGCATTCTTGCCGTCAAGTATTATAGACAGTCGTTATTTTCGAAA
TTGTCTGTAACTTTAAGGCTCATGACTATAGATGAAATAACTAATAACTA
AATAAAGTGATGTTCTTTCTTGTTcatgttttgaatttcaagcctaacaa
gattttttactttttgtatTGAAAATATCGGCTGGTAAAGGATTCTGGTT
TACACTCCTTTAAAGcaaattaccttatcggccctttttaaaCCGGCCCT
TATTGTCGTTCGAGCTCgtggtgtaaaaagggccgataaggtaataagTT
TATAGGTTAAAGGGGAGTTAAACAGGTACAATCAGACAAGTAAATCGTCT
ACTTTGTGCATCGTTGCTTTTCAGATGGACAATGGGGACCTTGGGGTACA
TTTTCCGCATGCTCTGGTACATGTGGTAACCGGACACGTGTATCAAAGCG
GGTATGCCCGAATAGTGGAGTGCCACCATGCGATGGTAGTGATACAAAGA
TTGAAGCTTGTGTTGAAGGAGAATGCTTCAAAGAATCATGCGACGGTAGG
AGTTTGTTTATTGAAGGTCTATCGTGTTTATTTGAAAAGGAACTTTaatg
aatttttatgaaatttttatttctacCGGGtggggtgcgccacaaaaaag
tttctctctttaaagtgaattttctcgaagtctaaaaatttaaaaataac
caatcctttttcattggaaagaagaaagataaagtgttcaaaaacgttga
aaatcgacctatcgtCGTTAATTCTATATTAACGAGCTCAGTATTCCCCA
AGTTTGAGTgtggaaattcttttttcagattGAAATGACTCATTGAACCA
AATATTATTTTTCGGGTATTTCTACAATTTGAACGATTTTCTCACTAATA
ATATTCTTATATAATGTGATGTGATATCAgcggttaaaggttttgttttt
acataagcgttcccgtttcatatcagacacatattttatatcaagacagt
gtctacctattgttatactatgctgatataagcaaaaaaatgcttttctt
ttcctctttctgagcAATCTTGCTTCACacccgtgtcaatccaatgtgaa
aaagcttgtgaattaaaattgatgagtaagcaaacgatatcactcttatt
taaaaacaaaacctttaatgtgACTCGTTTCATTATGACCCGTAAAGAAA
TGCAAAGCAAGTTGAAAAAACCTTTACTTTTCGTATGGTTagaaaacaaa
gacaatagGCCAGACATAGACGCTCTAATCAATTTGGATATTTCCAAAGA
CTGTATTTACCCAAACTCGTGTCCAGCCCCCTAGTGTACATTTGACACCT
ATGGTTATGACAGTGTTTATGAAAAGTGTACCTCGTCCAtctgtaaaatt
aaaaaatgtttcaagtgtCTTTGAGGTAGGGTAAGAACTTtcacttttaa
cttttaacttttttaggtTATGATGGTCAATACAGCTGCACATTCGATGA
AAGTTATAATCAAAATCAAGATGGATTTTGCCAAAGTAACAATTTCGATG
GATGGGCTTCTTATGGATTCATGGTACACTCAGGAAACACACCAAGTGCT
GATACAGGCCCATCAAATGACCatactttcaaaaaaagttagttttaaTC
ATGATTAAATCCTTGAACCTAGCTTAATCATTGATTTTTGTAACAGATCT
AGTTGTATTCTATCCGCAGACACGCGTTTCGTCCATCCTAGGACTCGTCA
GTGAAGCTCAGACCAGAGTGCTCTAAATACTAAGTGTTGCATGATCGCTT
TCGGTGAGCAGAGTAGCAAAGCTTAATCCGGACAAGCagcagttgacccc
ctggacaacccaaattacccccggacagagcaaatttaccccccgaacaa
ggcaaattttgatgatttttcgctaccccccggacaatatataaggttaa
tgtttttcttgaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgatgatttttc
gctaccccccccccaacaatatatcctccatcctcctcattttctggaag
agcaaATTGCTTATGGTCATGACAATAATATTCTCTATTTGAATAATCGT
TAAATTTCGATGCTCGGGGCgataaaatttttcattttaaactttaaata
tTATTCCAGGTTGTGGTAGTTACATTTATTACGAATCCTCCCAACAATCG
TACGGTGTTTTGGCCTCCGGTACCTTCATGAGTACCTCGGGACAGATGTG
TCTATCCTTTGCATTATCAATGTACAGCAAGATCAAAACAGACATGGGAG
TTTTAAATATTGCCTTACTAAAAGAAGACCTTAGCTTTGTCAAAACATTG
TGGACTCAAGATGGGGCGGTTTCGGACACGCCTGAAGATTGGCGAATGTT
ATCCGTTCCCGTTGATGGATTAACACAAAACATGAAATACCGAGTAAGTA
GAGAAATAGTATCCCATTTTCGTAGATGTCATTATCAAGGGCTTACCATA
TTAATAATAATAGGGTAATATGGTGATAATTAGAGCGTTGAATATCGAAA
CGCGAAGTGTCATTCGCATCCCCTGTGGCACAATACATATAGATACAATG
GCGCTGTTCCTGAATGTACTCTCATTGGACTGGATAGCTCAGTCGGCAGA
GCAATTGAAATAGTAATACTAAGTTCGAATCTCACTTCGGCCCTCAGTTT
AGAAATTCGCTAAAAAACTGAGGTCAATGCGCAGATGTATTGGCAAAATA
CctcaaaatcaatttatttaTTAGGCTTTGCAATAAAGAGACTTTAAAGT
CTAACTCTAGAAAACGTTccaatttataaaaaaactctGGGTTTGACAAT
CTACTATTGTATCATTGTCATGAAATTATATTGAATAGTGCTCGATGATA
AACAAACAAGATACCAGAgccaagcaaaatttaaaagttttctttcaata
aaagtacATAACTTAAAGTTTCGTGCTTCTGCACTTGTTCAAATGTACAA
GAGATGTGGTTGTGAAAAAAATCTGCgtgtaaaagtcaaaaaatgtttag
aaaaatgAGATAATTGGATAATTAAAAACTGTTTAGACAAGGGGTTACAA
TCtattattgtaaaatattttgctgtttctcatttAACTACTATTGGcgt
tgaaaaaaatatatagatACCACTTTAATTATTCTATGGatggatttaaa
aaattaatcaaactaGGATTATTATCTATATCTTCAATTACATGTGACtc
cctctctctaattcgatttttaaggagaCATAGGATTCGAATAGCAGAGA
GTGGCATCGTTGACGTTTGGACTATATAGATGAACCGTATTAGTAAACAG
AGAAGgattaaaggccggtctccacttgcacgcactgcaatcgcactttt
tcgaacaaagcttccacgctattggtcaaaagaaaaatgaagcaactcca
ttggcgcgatctgacgtaacggttgaaaaaagttgaaatgtgttcaactt
ctttttcaagcgcgctacatttttatgacgtaatcttttttccaagcaaa
aaggattgaagccaaaaggtgcaaTCGCAAcgtgcgcaagtggagaccgg
cctttagtaAACAGAGAAGAACTAAAAACCACCTTACCTTTAGATTGCTT
TTGTTGCAACTCGAATGAACGAAAACAGTGATATTGCAATCGATGACTTC
AAACTGATGGAAGGAAATTGCACTCAAGAAGGTACGAGTTTCCagctgaa
aaaaatattgaaaataaataagtACCGTAATTGTCCCCATTAAATACCCT
GggcctttttttctcaaagtaGGGCGTTTATTATAGAGGAGGCGTTTATA
CGAAGCAATACATATGGTATTTGAATAaacaaaagtaaattttatgCTCA
CTAAATGGTAACAGTattactacaatcatggtcaaaatctattgagaatt
tacctttttcctcgtttttcgaaattagGAGTTCgtgcgagaaagtcgat
tttttctgagccttattggaccatttttgagcttttggatcctcagatat
ATACTACAAAGTCTTATATATCTAgcattaaaactctaccctaacttaga
gcacttccaaatcgtttgtggttttaAAGATTCGtggggatttccctttt
ttctataATATTACGAACATGATTGTAGTGGGGATACATATTTCGAAGTG
CAACGCAGGGACCTCCATGATTAACTCAGCTAGAGGAGGAATAATGTTAG
TATAAGGTGGTAATGAGTGCTACAATTTAATTAACGCAAAAGGcaggatt
ttcgaaaataacTTTAGCTCATAGTTTGTTAAAAGATTGTAATTAACGTG
AGGATAACCGATTCGCGTTAATAACTTAAATTAGTCAATTGCATTCTTTT
ACATTGTATTTCAGTGGATGGACAATGGGCATCATGGGGCCAATGGGGCC
AGTGTGATAAAGAATGTGGTGAATCAGTTCGAACAAGAATGAGATTCTGT
ACAGAGCCAGCACCCTCCGCCAATGGTAAACAATGTCCAAATCAACTGAC
TGATTGGTATCAAAATGAAGACTGTCATCTGCCTGCTTGTAAAGGTTAGT
CAATTCCTGatatatgcaccactgcaatgacttcacgaaattatgcaggT
TTTCTGTTTTTATTCCACCCAAtgcgtcactttttctattgtttaagtga
cgtaagtggaaaatttcaaaagttctcagaagacccTCCAGTGgcgtgca
tatcatgaatacactGCACTGGTTTCGAGATacagtctccttaactcgaa
cctctataactcgaatgtttccTTTACTTGAACAAGCTTTCTATTCCTTC
GGTAGAATGCCTTTTATGAACCTTACTCAATAACTCGAAATGTCcttaat
ttgaataattttgtgTTCTCCATGCGTGCTGAGTTATGGAGGCTCccctg
caaattttttttgattccaTGATGATAGCATGAAAGAAGAAATTAAGTAA
ACGAGCTCCCTNTCCTGCAGATTTTTTTGATTCCATGTGATTAGCATGAA
AGAAGAAATTAAGTAAACGAGCTCCCTGTTTGAATAGTATGACAAAATGT
ACAATTTTCAACCAACTAGATTttgtttattcaaaatttttgtttaccaT
AGCATACATTATGAACATAAAAATTACCTGCCCAttttccccgggggggg
gggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNccgtcagtccgcaaacccagtgcccccccccgggccattttc
attaaaaactattTCTGAACAATATTGATGATCATGTTATGAAAATTCCC
AACAcaaatcaactttttcttttagttCATGGCGCTTGGACAAACTGGTT
CGATTGGGGAGAGTGCGACAAAAAGTGTGGTAACGGAACACGTATTCGTG
TCCGTGAATGTGCAAATCCTGCACCAGTCAATGGTGGTGATCATTGTTTG
GATCTCAGTGATAATGCACGAAAATTGAGTGATACTGAAGATGAGCCNAT
GTTTGGATCTCAGTGATAATGTACGAAAATTGAGTGATACTGAAGATGAG
CCATGTAATACACACCCATGCAAAAAGTGTTAAGATTTTGAATTGAAATA
CTGTACACTTTTTTATACATAATAAGTCTACTTTGTCAACTATGCTATTT
TTTCCTATTTTAAAACATTGAATTACAACTGACATTATTCTCcttttaaa
aacctttacttatttttataaatattgtTTGTAAAATCGTTGAGACGTAG
AGATGCGTACTCTCCcgattctttttaataataaaccttttaacttgcaa
taaataaaatacataTATTAAAAGTTAGCAAATCTTTTCCAAATAATGAT
ggtacacgtcttttttttttaaagaaactagttttaccaagcagcctcaa
tgtttcttaagaaatcggccttttgagccttaaatgtttcttacatgttt
ctaaactttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009353XLOC_009353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016729-exon-sc0000248-1491911889:278752..278911TCONS_00016729-exon-sc0000248-1491911889:278752..278911Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:278752..278911TCONS_00016729-exon-sc0000248-1510915933:278752..278911Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:278752..278911TCONS_00016729-exon-sc0000248-1575043694:278752..278911Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:280603..280796TCONS_00016729-exon-sc0000248-1491911889:280603..280796Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:280603..280796TCONS_00016729-exon-sc0000248-1510915933:280603..280796Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:280603..280796TCONS_00016729-exon-sc0000248-1575043694:280603..280796Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:281147..281660TCONS_00016729-exon-sc0000248-1491911889:281147..281660Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:281147..281660TCONS_00016729-exon-sc0000248-1510915933:281147..281660Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:281147..281660TCONS_00016729-exon-sc0000248-1575043694:281147..281660Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:284334..284423TCONS_00016729-exon-sc0000248-1491911889:284334..284423Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:284334..284423TCONS_00016729-exon-sc0000248-1510915933:284334..284423Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:284334..284423TCONS_00016729-exon-sc0000248-1575043694:284334..284423Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:285615..285677TCONS_00016729-exon-sc0000248-1491911889:285615..285677Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:285615..285677TCONS_00016729-exon-sc0000248-1510915933:285615..285677Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:285615..285677TCONS_00016729-exon-sc0000248-1575043694:285615..285677Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:286476..286646TCONS_00016729-exon-sc0000248-1491911889:286476..286646Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:286476..286646TCONS_00016729-exon-sc0000248-1510915933:286476..286646Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:286476..286646TCONS_00016729-exon-sc0000248-1575043694:286476..286646Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:287568..287738TCONS_00016729-exon-sc0000248-1491911889:287568..287738Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:287568..287738TCONS_00016729-exon-sc0000248-1510915933:287568..287738Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:287568..287738TCONS_00016729-exon-sc0000248-1575043694:287568..287738Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:288311..288594TCONS_00016729-exon-sc0000248-1491911889:288311..288594Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:288311..288594TCONS_00016729-exon-sc0000248-1510915933:288311..288594Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:288311..288594TCONS_00016729-exon-sc0000248-1575043694:288311..288594Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:289795..289882TCONS_00016729-exon-sc0000248-1491911889:289795..289882Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:289795..289882TCONS_00016729-exon-sc0000248-1510915933:289795..289882Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:289795..289882TCONS_00016729-exon-sc0000248-1575043694:289795..289882Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:290566..290745TCONS_00016729-exon-sc0000248-1491911889:290566..290745Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:290566..290745TCONS_00016729-exon-sc0000248-1510915933:290566..290745Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:290566..290745TCONS_00016729-exon-sc0000248-1575043694:290566..290745Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1491911889:292177..292813TCONS_00016729-exon-sc0000248-1491911889:292177..292813Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1510915933:292177..292813TCONS_00016729-exon-sc0000248-1510915933:292177..292813Clytia hemisphaericaexon
TCONS_00016729-exon-sc0000248-1575043694:292177..292813TCONS_00016729-exon-sc0000248-1575043694:292177..292813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:278752..292813 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0392391	0.0226413	0.0319378	0.0519524	0.0603442	0.0208085	0	0	0.0750738	0.220219	0.152463	0.01489	0	0.662229	0.0775841	0.0685404	0.122761	0.0882436	0	0	0.135545	0.0864137	0.0548305	0.025229	0.186009	0	0	0	0.00758098	0.033903
Blast
[Close]
BLAST of TCONS_00016729 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 6.457e-20
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 1 
Query: 1699 DFKLMEGNCTQEVDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHCLDL 2046
            DF          V+G W++W  W QC ++C   +R R R C  P P   G  C   L    + ++C++  C V G W+ W  W +C   CG G  +R R C+NPAP  GGD CL L
Sbjct:  771 DFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPC---LGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGL 883
The following BLAST results are available for this feature:
BLAST of TCONS_00016729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A6.457e-2037.07Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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