|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016731 ID=TCONS_00016731|Name=TCONS_00016731|organism=Clytia hemisphaerica|type=transcript|length=1356bp
TTAAAGGTTAAATGATCTAACACAGCTGTGCCCCATTCTGCCAATGTTAA
GATACTTTGATCCTTGCCTTAATGTCAGGGAACTTCCCCATGAAATTTTC
CTATCCACAAAAAAACGccggaaaatgccggaaatcgccgtttttgcaga
ttttcattggattttttccttatatttctatgtttttcacacaaaaacat
tattgataacaatgctcaccatcaagtatgattcaattgtcaataaaact
gatttttgtgacCAGAActtcactttattttttccctacaacccttccct
ctctaatcaatgatgaatttattacGTTCTgcattttctgactgattttt
tttcacttttctcctcgcattgctatctaactttcatcatcaagtAGTTG
CATTCAGCCTCTAGCTTGTTATATTTGCCTTCAGtacaaagaaaatataa
aatggtTTTAGTAGGTGTGGTTGGTGGTACTGGTGGATGTGGAGTGCCAC
TCATTAATTATCTTCTTGAAAAAGGATACAGTGTCCGAATGCTTGCAAGG
ACACCAGAGAAAGTCACTCAAATAGACAACAAAGAAGTTACTGTCATTAA
AGGTGATGCTTTGAATGAAGAAGACATTGCTGAAGTTTGTCAAGATGTTG
ACCTTGTCATCTCATGTGCTGGTGGAGGGCCTGGTGCACAAATCATGGAA
AAACTGGCATCCAATATTGTAAAAGCTAAACCAAAACGTTGTTATTTCAT
AACCTCATTAGGGATGGGAGGAAGCTCGATGACTATCAATTTGTTACTTG
GTTTTTTCCTTGGACGTCAAAAGATTCTTGATTATGAAAAAGCTGATGCG
CTGATGCTGAAGAATAATTACACAGTGGTTCGACCCTGTCATTTAAAAGG
AGAACCAGTCGGTGATTATTGTGCTACTTCAGACACAGGGATGTCTTCCA
AAGCCATCTCTAAAACTGATGTTgctttatttttgttaaattgtGTCGAA
AATCAAGAATGGGATGGAATGCCTGTGCAATTGTATAATGCAGcctgcaa
aaaatgaaaaatattttctgcaTGGGCTTTTACTGAATTTTTTACTATAC
ATAGTATAATTTAACCCTTTTAATCCCAAATGAATCATTATATGCCTAGT
TTAACTtctttgtaattattttttattccCTAGATAGATATACTTTCAGC
CAAATTATTttatattcaactttttaatgTTCACCTTAACTATTGATTTA
ATATAAGACATAATATGTTCACAGACATTCTGGGAAACACGTGAAATAAA
ACAGTATTGATCGTTCCCAAAAATCCATATAAACAGTCAGTCTCGAGCAA
TCCTTT Run BLAST on NCBI protein sequence of TCONS_00016731-protein >TCONS_00016731-protein ID=TCONS_00016731-protein|Name=TCONS_00016731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MVLVGVVGGTGGCGVPLINYLLEKGYSVRMLARTPEKVTQIDNKEVTVIK
GDALNEEDIAEVCQDVDLVISCAGGGPGAQIMEKLASNIVKAKPKRCYFI
TSLGMGGSSMTINLLLGFFLGRQKILDYEKADALMLKNNYTVVRPCHLKG
EPVGDYCATSDTGMSSKAISKTDVALFLLNCVENQEWDGMPVQLYNAACK
K Run BLAST on NCBI transcript from alignment at sc0000248:300082..301524+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016731 ID=TCONS_00016731|Name=TCONS_00016731|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at sc0000248:300082..301524+ (Clytia hemisphaerica)
TTAAAGGTTAAATGATCTAACACAGCTGTGCCCCATTCTGCCAATGTTAA
GATACTTTGATCCTTGCCTTAATGTCAGGGAACTTCCCCATGAAATTTTC
CTATCCACAAAAAAACGccggaaaatgccggaaatcgccgtttttgcaga
ttttcattggattttttccttatatttctatgtttttcacacaaaaacat
tattgataacaatgctcaccatcaagtatgattcaattgtcaataaaact
gatttttgtgacCAGAActtcactttattttttccctacaacccttccct
ctctaatcaatgatgaatttattacGTTCTgcattttctgactgattttt
tttcacttttctcctcgcattgctatctaactttcatcatcaagtAGTTG
CATTCAGCCTCTAGCTTGTTATATTTGCCTTCAGtacaaagaaaatataa
aatggtTTTAGTAGGTGTGGTTGGTGGTACTGGTGGATGTGGAGTGCCAC
TCATTAATTATCTTCTTGAAAAAGGATACAGTGTCCGAATGCTTGCAAGG
ACACCAGAGAAAGTCACTCAAATAGACAACAAAGAAGTTACTGTCATTAA
AGGTGATGCTTTGAATGAAGAAGACATTGCTGAAGTTTGTCAAGATGTTG
ACCTTGTCATCTCATGTGCTGGTGGAGGGCCTGGTGCACAAATCATGGAA
AAACTGGCATCCAATATTGTAAAAGCTAAACCAAAACGTTGTTATTTCAT
AACCTCATTAGGGATGGGAGGAAGCTCGATGACTATCAATTTGTTACTTG
GTTTTTTCCTTGGACGTCAAAAGATTCTTGATTATGAAAAAGCTGATGCG
CTGATGCTGAAGAATAATTACACAGTGGTTCGACCCTGTCATTTAAAAGG
AGAACCAGTCGGTGATTATTGTGCTACTTCAGACACAGGGATGTCTTCCA
AAGCCATCTCTAAAACTGATGTTgctttatttttgttaaattgtGTCGAA
AATCAAGAATGGGATGGAATGCCTGTGCAATTGTATAATGCAGcctgcaa
aaaatgaaaaatattttctgcaTGGGCTTTTACTGAATTTTTTACTATAC
ATAGTATAATTTAACCCTTTTAATCCCAAATGAATCATTATATGCCTAGT
TTAACTtctttgtaattattttttattccCTAGATAGATATACTTTCAGC
CAAATTATTATATATNgcttctttgtaatttttttttattccctAGATAG
ATATACTTTCAGCCAAATTATTATATATAACATCCATTTTCTACACttat
attcaactttttaatgTTCACCTTAACTATTGATTTAATATAAGACATAA
TATGTTCACAGACATTCTGGGAAACACGTGAAATAAAACAGTATTGATCG
TTCCCAAAAATCCATATAAACAGTCAGTCTCGAGCAATCCTTT Coding sequence (CDS) from alignment at sc0000248:300082..301524+ >TCONS_00016731 ID=TCONS_00016731|Name=TCONS_00016731|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000248:300082..301524+ (Clytia hemisphaerica)
atggtTTTAGTAGGTGTGGTTGGTGGTACTGGTGGATGTGGAGTGCCACT
CATTAATTATCTTCTTGAAAAAGGATACAGTGTCCGAATGCTTGCAAGGA
CACCAGAGAAAGTCACTCAAATAGACAACAAAGAAGTTACTGTCATTAAA
GGTGATGCTTTGAATGAAGAAGACATTGCTGAAGTTTGTCAAGATGTTGA
CCTTGTCATCTCATGTGCTGGTGGAGGGCCTGGTGCACAAATCATGGAAA
AACTGGCATCCAATATTGTAAAAGCTAAACCAAAACGTTGTTATTTCATA
ACCTCATTAGGGATGGGAGGAAGCTCGATGACTATCAATTTGTTACTTGG
TTTTTTCCTTGGACGTCAAAAGATTCTTGATTATGAAAAAGCTGATGCGC
TGATGCTGAAGAATAATTACACAGTGGTTCGACCCTGTCATTTAAAAGGA
GAACCAGTCGGTGATTATTGTGCTACTTCAGACACAGGGATGTCTTCCAA
AGCCATCTCTAAAACTGATGTTgctttatttttgttaaattgtGTCGAAA
ATCAAGAATGGGATGGAATGCCTGTGCAATTGTATAATGCAGcctgcaaa
aaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016731-exon-sc0000248-1491911889:300082..301290 | TCONS_00016731-exon-sc0000248-1491911889:300082..301290 | Clytia hemisphaerica | exon |
| TCONS_00016731-exon-sc0000248-1510915933:300082..301290 | TCONS_00016731-exon-sc0000248-1510915933:300082..301290 | Clytia hemisphaerica | exon |
| TCONS_00016731-exon-sc0000248-1575043694:300082..301290 | TCONS_00016731-exon-sc0000248-1575043694:300082..301290 | Clytia hemisphaerica | exon |
| TCONS_00016731-exon-sc0000248-1491911889:301378..301524 | TCONS_00016731-exon-sc0000248-1491911889:301378..301524 | Clytia hemisphaerica | exon |
| TCONS_00016731-exon-sc0000248-1510915933:301378..301524 | TCONS_00016731-exon-sc0000248-1510915933:301378..301524 | Clytia hemisphaerica | exon |
| TCONS_00016731-exon-sc0000248-1575043694:301378..301524 | TCONS_00016731-exon-sc0000248-1575043694:301378..301524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:300082..301524 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016040 | NAD(P)-bd_dom |
Blast
The following BLAST results are available for this feature:
|
