|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016736 ID=TCONS_00016736|Name=TCONS_00016736|organism=Clytia hemisphaerica|type=transcript|length=1898bp
TGGACAGATGCAGATGGACTGGCTGATTCTGCCTGTTTCTAGCCATTAAA
GTCTTCTAATTAGTGCTGAATAAAGTTTGTTGACAGTCAAACTTtcaatc
tgtctcctgtcttgAACATTCAGATTGAggtataatatttttatttcgtc
CATAAACAGTTTGTTTCAGACATTCAAATTGTCCAGTCTGTCTCAGACAT
TCAGACTGGGTTTTAAAAACTGTCTTTCAAGTTTGTTCCAGACGTTCAAA
CTTTCAAAGTTAAAGGATTTTTACAaggaaattttcataaaaatttgcaA
TTGAAACTCAGAAAATAAAACCCATGTCATCATGAGTATTGTTTACGAGG
AGGATGAAGAAGAATTAATTGACCTAGAAGAGGCCCTTGAGATTTCTCAC
TTTCAGAATGCTTGTAAAACTTCGAGATATTATTCTTGTGCTGTAGATTG
CttccttgaaatattttatcgGTTATTTCTtcctgaaatccaaaaaaatt
tggCTTTTGAAGATCTGAGTGAGTTCCTTAATTTGCTTTTCATTAGTGGG
TCTACTGAAATTTCAGTTTCAACTAGCAATATTATTGAGGCAAAGCAACA
TAATGCAATTCGACTATTAGATGAAATCAGAGAACCTATTTGGcgtaaaa
ttattgaaaattgtaATTCTTTTGTAAACAGGGATTGTACTGctcaattt
tcagaattattttCTAGCAAtctcttcaaaattttatcaaaagaagaaaa
attcttttttgaaacaAGTTTTGAAGCGAAGGGCACTTGTTTGTCGTGCG
GAATagaaaaaagaagcaaactcACAAGCATGGTTAATtatatttctgaa
atttcttaTCCCGAGCTCCTTACAAATGAAAGTTACTTGCCAAGTTGCCT
AGAAAAGTCTTTTGATCACAACGCAGGGATTTGTGATATGTGTGCTGTCT
CTATTCCAGCAAATATTCGGTCAATTGAATATTCTCACTTTTTAATGATA
GAATATAGTGAAACAAATATGAATAGATGCACATTNAATATTTCTCACTT
TTTAATGATAGAATATAGTGAAACAATTATGAATAGATGCAAATTTTTGG
AACAATTTATTTTAGAAGGAAATCCTTACAAGTTATCAGCATTAGTGCAG
AACACTGGAGCACATTTCACATGTGCTTTGTTTTGGGAAACTAAATGGAT
TTATTTTGACGATCTCAAAAAAGATAGGATATCTTTTAACAATTTAGTTC
AAATGTTAAATGAATACCCAGGAGGATGGTTTTTCGGCATCTATAAAAAA
GTATCTGAAGAAATAGATTTTGGTGTTGAACATATTATGTCCActtcaaa
aaacaaaatgtcTGAATTAAACACTTTAAGAAATGTGAAAAACAAAAGCA
GTGATAAAAAAGAATATCccttaagaaaaagaaaatgtaccAGTTATGAA
AAATTTTCGGAtgaaatagtaaaaaaaaaaatgaagatctttgAAGCTAT
TGACAAAAAAGTTAAGGTTGACCTTGAAAagccaaagaaaaataataagc
aAAAGTATTATGAccctgaaaaaaggaaaaagctaCACCAAAAAAATTAC
AACCCGAAAAGGGCACAAGAAAAATATGATCCAAAAAAAGCACGAGAAAA
GTATGATCCAATTATGGCAAAAGAAAAGTATGATCCAAAAAAGGCACGAG
AAAACTATGATCCAATTAAGGCAAAAGAAAAGTACAATCCATCaaagagg
aaagaaaaatgggAGAACATTGATcgattgaaaaataattttaccaatga
aaagcgcaaaaaaaaatatgctaaaaataaagaacaacaaCCAAGCATAA
ACAAAAGCATTAAAGACTTTCAGAATTCTATGAAATTCTCTATAGTAC Run BLAST on NCBI protein sequence of TCONS_00016736-protein >TCONS_00016736-protein ID=TCONS_00016736-protein|Name=TCONS_00016736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
MSIVYEEDEEELIDLEEALEISHFQNACKTSRYYSCAVDCFLEIFYRLFL
PEIQKNLAFEDLSEFLNLLFISGSTEISVSTSNIIEAKQHNAIRLLDEIR
EPIWRKIIENCNSFVNRDCTAQFSELFSSNLFKILSKEEKFFFETSFEAK
GTCLSCGIEKRSKLTSMVNYISEISYPELLTNESYLPSCLEKSFDHNAGI
CDMCAVSIPANIRSIEYSHFLMIEYSETNMNRCTXNISHFLMIEYSETIM
NRCKFLEQFILEGNPYKLSALVQNTGAHFTCALFWETKWIYFDDLKKDRI
SFNNLVQMLNEYPGGWFFGIYKKVSEEIDFGVEHIMSTSKNKMSELNTLR
NVKNKSSDKKEYPLRKRKCTSYEKFSDEIVKKKMKIFEAIDKKVKVDLEK
PKKNNKQKYYDPEKRKKLHQKNYNPKRAQEKYDPKKAREKYDPIMAKEKY
DPKKARENYDPIKAKEKYNPSKRKEKWENIDRLKNNFTNEKRKKKYAKNK
EQQPSINKSIKDFQNSMKFSIV Run BLAST on NCBI transcript from alignment at sc0000248:27567..29572- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016736 ID=TCONS_00016736|Name=TCONS_00016736|organism=Clytia hemisphaerica|type=transcript|length=2006bp|location=Sequence derived from alignment at sc0000248:27567..29572- (Clytia hemisphaerica)
TGGACAGATGCAGATGGACTGGCTGATTCTGCCTGTTTCTAGCCATTAAA
GTCTTCTAATTAGTGCTGAATAAAGTTTGTTGACAGTCAAACTTTCAATC
TGTCTCCTGTCTTGAACATTCAGATTGAGGTATAATATTTTTATTTCGTC
CATAAACAGTTTGTTTCAGACATTCAAATTGTCCAGTCTGTCTCAGACAT
TCAGACTGGGTTTTAAAAACTGTCTTTCAAGTTTGTTCCAGACGTTCAAA
CTTTCAAAGTTAAAGGATTTTTACAAGGAAATTTTCATAAAAATTTGCAA
TTGAAACTCAGAAAATAAAACCCATGTCATCATGAGTATTGTTTACGAGG
AGGATGAAGAAGAATTAATTGACCTAGAAGAGGCCCTTGAGATTTCTCAC
TTTCAGAATGCTTGTAAAACTTCGAGATATTATTCTTGTGCTGTAGATTG
CTTCCTTGAAATATTTTATCGGTTATTTCTTCCTGAAATCCAAAAAAATT
TGGCTTTTGAAGATCTGAGTGAGTTCCTTAATTTGCTTTTCATTAGTGGG
TCTACTGAAATTTCAGTTTCAACTAGCAATATTATTGAGGCAAAGCAACA
TAATGCAATTCGACTATTAGATGAAATCAGAGAACCTATTTGGCGTAAAA
TTATTGAAAATTGTAATTCTTTTGTAAACAGGGATTGTACTGCTCAATTT
TCAGAATTATTTTCTAGCAATCTCTTCAAAATTTTATCAAAAGAAGAAAA
ATTCTTTTTTGAAACAAGTTTTGAAGCGAAGGGCACTTGTTTGTCGTGCG
GAATAGAAAAAAGAAGCAAACTCACAAGCATGGTTAATTATATTTCTGAA
ATTTCTTATCCCGAGCTCCTTACAAATGAAAGTTACTTGCCAAGTTGCCT
AGAAAAGTCTTTTGATCACAACGCAGGGATTTGTGATATGTGTGCTGTCT
CTATTCCAGCAAATATTCGGTCAATTGAATATTCTCACTTTTTAATGATA
GAATATAGTGAAACAAATATGAATAGATGCACATTNAATATTTCTCACTT
TTTAATGATAGAATATAGTGAAACAATTATGAATAGATGCAAATTTTTGG
AACAATTTATTTTAGAAGGAAATCCTTACAAGTTATCAGCATTAGTGCAG
AACACTGGAGCACATTTCACATGTGCTTTGTTTTGGGAAACTAAATGGAT
TTATTTTGACGATCTCAAAAAAGATAGGATATCTTTTAACAATTTAGTTC
AAATGTTAAATGAATACCCAGGAGGATGGTTTTTCGGCATCTATAAAAAA
GTATCTGAAGAAATAGATTTTGGTGTTGAACATATTATGTCCACTTCAAA
AAACAAAATGTCTGAATTAAACACTTTAAGAAATGTGAAAAACAAAAGCA
GTGATAAAAAAGAATATCCCTTAAGAAAAAGAAAATGTACCAGTTATGAA
AAATTTTCGGATGAAATAGTAAAAAAAAAAATGAAGATCTTTGAAGCTAT
TGACAAAAAAGTTAAGGTTGACCTTGAAAAGCCAAAGAAAAATAATAAGC
AAAAGTATTATGACCCTGAAAAAAGGAAAAAGCTACACCAAAAAAATTAC
AACCCGAAAAGGGCACAAGAAAAATATGATCCAAAAAAAGCACGAGAAAA
GTATGATCCAATTATGGCAAAAGAAAAGTATGATCCAATTATGGCAAAAG
AAAAGTATGATCCAAAAAGGGCAAAAGAAAAGTATGATCCAAAAAGGGCA
AAAGAAAAGTATGATCCAAAAAAGGCAAAAGAAAAGTATGATCCAAAAAA
GGCACGAGAAAACTATGATCCAATTAAGGCAAAAGAAAAGTACAATCCAT
CAAAGAGGAAAGAAAAATGGGAGAACATTGATCGATTGAAAAATAATTTT
ACCAATGAAAAGCGCAAAAAAAAATATGCTAAAAATAAAGAACAACAACC
AAGCATAAACAAAAGCATTAAAGACTTTCAGAATTCTATGAAATTCTCTA
TAGTAC Coding sequence (CDS) from alignment at sc0000248:27567..29572- >TCONS_00016736 ID=TCONS_00016736|Name=TCONS_00016736|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at sc0000248:27567..29572- (Clytia hemisphaerica)
GCAAAAGAAAAGTATGATCCAAAAAAGGCACGAGAAAACTATGATCCAAT
TAAGGCAAAAGAAAAGTACAATCCATCAAAGAGGAAAGAAAAATGGGAGA
ACATTGATCGATTGAAAAATAATTTTACCAATGAAAAGCGCAAAAAAAAA
TATGCTAAAAATAAAGAACAACAACCAAGCATAAACAAAAGCATTAAAGA
CTTTCAGAATTCTATGAAATTCTCTATAGTAATGAGTATTGTTTACGAGG
AGGATGAAGAAGAATTAATTGACCTAGAAGAGGCCCTTGAGATTTCTCAC
TTTCAGAATGCTTGTAAAACTTCGAGATATTATTCTTGTGCTGTAGATTG
CTTCCTTGAAATATTTTATCGGTTATTTCTTCCTGAAATCCAAAAAAATT
TGGCTTTTGAAGATCTGAGTGAGTTCCTTAATTTGCTTTTCATTAGTGGG
TCTACTGAAATTTCAGTTTCAACTAGCAATATTATTGAGGCAAAGCAACA
TAATGCAATTCGACTATTAGATGAAATCAGAGAACCTATTTGGCGTAAAA
TTATTGAAAATTGTAATTCTTTTGTAAACAGGGATTGTACTGCTCAATTT
TCAGAATTATTTTCTAGCAATCTCTTCAAAATTTTATCAAAAGAAGAAAA
ATTCTTTTTTGAAACAAGTTTTGAAGCGAAGGGCACTTGTTTGTCGTGCG
GAATAGAAAAAAGAAGCAAACTCACAAGCATGGTTAATTATATTTCTGAA
ATTTCTTATCCCGAGCTCCTTACAAATGAAAGTTACTTGCCAAGTTGCCT
AGAAAAGTCTTTTGATCACAACGCAGGGATTTGTGATATGTGTGCTGTCT
CTATTCCAGCAAATATTCGGTCAATTGAATATTCTCACTTTTTAATGATA
GAATATAGTGAAACAAATATGAATAGATGCACATTNAATATTTCTCACTT
TTTAATGATAGAATATAGTGAAACAATTATGAATAGATGCAAATTTTTGG
AACAATTTATTTTAGAAGGAAATCCTTACAAGTTATCAGCATTAGTGCAG
AACACTGGAGCACATTTCACATGTGCTTTGTTTTGGGAAACTAAATGGAT
TTATTTTGACGATCTCAAAAAAGATAGGATATCTTTTAACAATTTAGTTC
AAATGTTAAATGAATACCCAGGAGGATGGTTTTTCGGCATCTATAAAAAA
GTATCTGAAGAAATAGATTTTGGTGTTGAACATATTATGTCCACTTCAAA
AAACAAAATGTCTGAATTAAACACTTTAAGAAATGTGAAAAACAAAAGCA
GTGATAAAAAAGAATATCCCTTAAGAAAAAGAAAATGTACCAGTTATGAA
AAATTTTCGGATGAAATAGTAAAAAAAAAAATGAAGATCTTTGAAGCTAT
TGACAAAAAAGTTAAGGTTGACCTTGAAAAGCCAAAGAAAAATAATAAGC
AAAAGTATTATGACCCTGAAAAAAGGAAAAAGCTACACCAAAAAAATTAC
AACCCGAAAAGGGCACAAGAAAAATATGATCCAAAAAAAGCACGAGAAAA
GTATGATCCAATTATGGCAAAAGAAAAGTATGATCCAAAAAAGGCACGAG
AAAACTATGATCCAATTAAGGCAAAAGAAAAGTACAATCCATCAAAGAGG
AAAGAAAAATGGGAGAACATTGATCGATTGAAAAATAATTTTACCAATGA
AAAGCGCAAAAAAAAATATGCTAAAAATAAAGAACAACAACCAAGCATAA
ACAAAAGCATTAAAGACTTTCAGAATTCTATGAAATTCTCTATAGTAATG
AGTATTGTTTACGAGGAGGATGAAGAAGAATTAATTGACCTAGAAGAGGC
CCTTGAGATTTCTCACTTTCAGAATGCTTGTAAAACTTCGAGATATTATT
CTTGTGCTGTAGATTGCTTCCTTGAAATATTTTATCGGTTATTTCTTCCT
GAAATCCAAAAAAATTTGGCTTTTGAAGATCTGAGTGAGTTCCTTAATTT
GCTTTTCATTAGTGGGTCTACTGAAATTTCAGTTTCAACTAGCAATATTA
TTGAGGCAAAGCAACATAATGCAATTCGACTATTAGATGAAATCAGAGAA
CCTATTTGGCGTAAAATTATTGAAAATTGTAATTCTTTTGTAAACAGGGA
TTGTACTGCTCAATTTTCAGAATTATTTTCTAGCAATCTCTTCAAAATTT
TATCAAAAGAAGAAAAATTCTTTTTTGAAACAAGTTTTGAAGCGAAGGGC
ACTTGTTTGTCGTGCGGAATAGAAAAAAGAAGCAAACTCACAAGCATGGT
TAATTATATTTCTGAAATTTCTTATCCCGAGCTCCTTACAAATGAAAGTT
ACTTGCCAAGTTGCCTAGAAAAGTCTTTTGATCACAACGCAGGGATTTGT
GATATGTGTGCTGTCTCTATTCCAGCAAATATTCGGTCAATTGAATATTC
TCACTTTTTAATGATAGAATATAGTGAAACAAATATGAATAGATGCACAT
TNAATATTTCTCACTTTTTAATGATAGAATATAGTGAAACAATTATGAAT
AGATGCAAATTTTTGGAACAATTTATTTTAGAAGGAAATCCTTACAAGTT
ATCAGCATTAGTGCAGAACACTGGAGCACATTTCACATGTGCTTTGTTTT
GGGAAACTAAATGGATTTATTTTGACGATCTCAAAAAAGATAGGATATCT
TTTAACAATTTAGTTCAAATGTTAAATGAATACCCAGGAGGATGGTTTTT
CGGCATCTATAAAAAAGTATCTGAAGAAATAGATTTTGGTGTTGAACATA
TTATGTCCACTTCAAAAAACAAAATGTCTGAATTAAACACTTTAAGAAAT
GTGAAAAACAAAAGCAGTGATAAAAAAGAATATCCCTTAAGAAAAAGAAA
ATGTACCAGTTATGAAAAATTTTCGGATGAAATAGTAAAAAAAAAAATGA
AGATCTTTGAAGCTATTGACAAAAAAGTTAAGGTTGACCTTGAAAAGCCA
AAGAAAAATAATAAGCAAAAGTATTATGACCCTGAAAAAAGGAAAAAGCT
ACACCAAAAAAATTACAACCCGAAAAGGGCACAAGAAAAATATGATCCAA
AAAAAGCACGAGAAAAGTATGATCCAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016736-exon-sc0000248-1575043694:27907..29572 | TCONS_00016736-exon-sc0000248-1575043694:27907..29572 | Clytia hemisphaerica | exon |
| TCONS_00016736-exon-sc0000248-1575043694:27567..27798 | TCONS_00016736-exon-sc0000248-1575043694:27567..27798 | Clytia hemisphaerica | exon |
| TCONS_00016736-exon-sc0000248-1510915933:27907..29572 | TCONS_00016736-exon-sc0000248-1510915933:27907..29572 | Clytia hemisphaerica | exon |
| TCONS_00016736-exon-sc0000248-1510915933:27567..27798 | TCONS_00016736-exon-sc0000248-1510915933:27567..27798 | Clytia hemisphaerica | exon |
| TCONS_00016736-exon-sc0000248-1491911889:27907..29572 | TCONS_00016736-exon-sc0000248-1491911889:27907..29572 | Clytia hemisphaerica | exon |
| TCONS_00016736-exon-sc0000248-1491911889:27567..27798 | TCONS_00016736-exon-sc0000248-1491911889:27567..27798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:27567..29572 - |
Blast
The following BLAST results are available for this feature:
|
