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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016745 ID=TCONS_00016745|Name=TCONS_00016745|organism=Clytia hemisphaerica|type=transcript|length=3900bpRun BLAST on NCBI transcript from alignment at sc0000248:194406..207569- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016745 ID=TCONS_00016745|Name=TCONS_00016745|organism=Clytia hemisphaerica|type=transcript|length=13164bp|location=Sequence derived from alignment at sc0000248:194406..207569- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016745 vs. Swiss-Prot (Human)
Match: ANKE1 (Ankyrin repeat and EF-hand domain-containing protein 1 OS=Homo sapiens GN=ANKEF1 PE=2 SV=2) HSP 1 Score: 312.768 bits (800), Expect = 6.195e-134 Identity = 182/466 (39.06%), Postives = 269/466 (57.73%), Query Frame = 2
Query: 953 RSSQRMQES*EKQRNKTWNTSRVDVHDYDTETEG----------QRSGKIPTQDFISVLRANKSPLNEDKLQSILKPHDPQQSGKIDYELFFTAKKFINKQFLLDXXXXXXXXXXXXXXXXXXXXXIEMPICVKEE--IERQKSGGPLLNYVEKKELLTDFTRFNKDNPPLHPIQDDSVWYCPKSGARFIHINEVIKYNDRESMKAAVKDGLDLDQKDKFYKTPLMMACLEGNLQMARYLVSHGANVNEMDSFKWTALHFACHSGQKDLVELLINNGAQMDTQSINGGTPIMRAIESSKCDVVQFMIDNGAKIQLENKKGSTALDIAFAYADPRIIEIVQKRWDQLPPPIDXXXXXXXXXXXXXXXXXXXXXXXXXVSMPEIRLTKSQQNMKYEDHRETSAVIKAATAIANGASLDKDISYTPKRAWLPEPTTKELLGERQDNRERYGYEVDFVDYQPPFQSHITE 2314
R + ++ K N W + +HD+ E E + G I DF+ VL + + ++L +I H+ + G ++ FF +++NK F+L KK KGKKGK + +PICV E R++ GGP +E + +TD +RFN+D+PP HPIQDDSVWY S F +IN + K D S+K A + G+ +D KD +YKTPLM AC GN+ + ++L+ GANVN D+F WT LHFACH+GQ+D+VELL+ +GA +D SIN TP+ RAIES + D V++++D GAK QLEN+KG +A+D+A AYAD RII++++++ D LP P + +K GK P +T + +S T S+ + V+ + I +G + DI++ P+R W PE TT EL+ +R+ RER+ +EVDF D+ PFQ +ITE
Sbjct: 308 RIANKLARPGAKNPNPLW---ALRLHDWSVEREAFLREAFAVLDRGDGSISKNDFVMVLEERQDYASSEQLAAIAHLHEKTRGGGVNINEFFKGTRYLNKSFVLGSYGPKKKEKGMGKKGKKGKFVLPLPICVIPEYAFPRRQDGGPPYYMIETYKNVTDSSRFNRDHPPEHPIQDDSVWYIDDSEKVFSNINIITKAGDLASLKKAFESGIPVDMKDNYYKTPLMTACASGNIDVVKFLLEKGANVNATDNFLWTPLHFACHAGQQDIVELLVESGALIDAASINNSTPLNRAIESCRLDTVKYLLDIGAKFQLENRKGHSAMDVAKAYADYRIIDLIKEKLDNLPKPAENQKLKGKTPPILKTEGPEIKKEEELLSSIYGVPTTSEGK-----KVQKGNVVHLNSLITSGYTKKVDITFIPRRIWSPEATTAELIRKRELRRERFTHEVDFDDFMMPFQKNITE 765 HSP 2 Score: 186.037 bits (471), Expect = 6.195e-134 Identity = 108/297 (36.36%), Postives = 161/297 (54.21%), Query Frame = 3
Query: 63 MPIATDRLSKLQILKLIQAVNEKDHDKIVKLIDNGIPDLVNFAEPSHGRTGLHLAACANDDATIKHLISYGADCDQTDLEGRTPYMKAAEYGHVQALKALLEGALDPDLSLRDLDGNNICNYCLHATKRHQECLNLAIKYGANVHVCDNDGSSLLSKATSEGLDKAVK----TLLNAGVEVNQQNESTGKSALHIACEKGLEECARLLLKFNANPNCYNFKNVSAAHSASANGHLSVLQILSGYGADFNVLDAKRNTPMHLAADKGYGAVCKYLGQRGCLATAKNADGKLARVIAKD 941
M +A RL LQI K++Q V KD +I KL G P+L+N+ EP +G + LHLA+ +ND + L+ GA D D G TP M+AAE GH +++ L + D+++ D +G + YC+ TKRH C +A+++GA+V+ +G + +A + D VK T L G N N STG++AL A +G+ E R +L+ N ++ AAH A+ G +L++L Y D ++ NTP+H AA G+ CKY+ QRGC KN D K R +AK+
Sbjct: 1 MALADKRLENLQIYKVLQCVRNKDKKQIEKLTKLGYPELINYTEPINGLSALHLASVSNDIDMVSFLLDLGAHPDVQDRMGCTPTMRAAELGHELSMEILAKAK--ADMTIVDNEGKGVLFYCILPTKRHYRCALIALEHGADVNNSTYEGKPIFLRACEDAHD--VKDVCLTFLEKGANPNAINSSTGRTALMEASREGVVEIVRGILERGGEVNAFDNDRHHAAHFAAKGGFFDILKLLFAYNGDVGLISINGNTPLHYAAMGGFADCCKYIAQRGCDLKWKNLDHKTPRAVAKE 293 The following BLAST results are available for this feature:
BLAST of TCONS_00016745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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