TCONS_00016771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016771
Unique NameTCONS_00016771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016771 ID=TCONS_00016771|Name=TCONS_00016771|organism=Clytia hemisphaerica|type=transcript|length=345bp
gggttttttagatttttcgatAAATCTTTATTTATACCATTGTTTCAGTT
TCTTTGTTTCCCTCTATAATATAAATCTCTTCATCAGAATTGTTTGCTTC
ACTCCTATCATCCATACTGTCTCTGAGAACTGGTTTATGACTAGAAATAT
ACCAGTGAGGGTTTCTTGCAATTCTGTTCACTTTCAAAAGTAAATGCTCA
TACATTCTCTCCGTTATGAGCTCTTTATCAAATAGATTTATTGTTGAAAT
CCAGAGATGTGGGCAAGATTGGTTACTGATTGCATTCTTAACAGATTCTA
TTAAATGTGAAAAGCAATTTTCAAGTGTTTCCTTTTCCCAAAATT
Run BLAST on NCBI

protein sequence of TCONS_00016771-protein

>TCONS_00016771-protein ID=TCONS_00016771-protein|Name=TCONS_00016771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
FWEKETLENCFSHLIESVKNAISNQSCPHLWISTINLFDKELITERMYEH
LLLKVNRIARNPHWYISSHKPVLRDSMDDRSEANNSDEEIYIIEGNKETE
TMV
Run BLAST on NCBI

transcript from alignment at sc0000248:252169..252513

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016771 ID=TCONS_00016771|Name=TCONS_00016771|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at sc0000248:252169..252513 (Clytia hemisphaerica)
AATTTTGGGAAAAGGAAACACTTGAAAATTGCTTTTCACATTTAATAGAA
TCTGTTAAGAATGCAATCAGTAACCAATCTTGCCCACATCTCTGGATTTC
AACAATAAATCTATTTGATAAAGAGCTCATAACGGAGAGAATGTATGAGC
ATTTACTTTTGAAAGTGAACAGAATTGCAAGAAACCCTCACTGGTATATT
TCTAGTCATAAACCAGTTCTCAGAGACAGTATGGATGATAGGAGTGAAGC
AAACAATTCTGATGAAGAGATTTATATTATAGAGGGAAACAAAGAAACTG
AAACAATGGTATAAATAAAGATTTatcgaaaaatctaaaaaaccc

Coding sequence (CDS) from alignment at sc0000248:252169..252513

>TCONS_00016771 ID=TCONS_00016771|Name=TCONS_00016771|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000248:252169..252513 (Clytia hemisphaerica)
TTTTGGGAAAAGGAAACACTTGAAAATTGCTTTTCACATTTAATAGAATC
TGTTAAGAATGCAATCAGTAACCAATCTTGCCCACATCTCTGGATTTCAA
CAATAAATCTATTTGATAAAGAGCTCATAACGGAGAGAATGTATGAGCAT
TTACTTTTGAAAGTGAACAGAATTGCAAGAAACCCTCACTGGTATATTTC
TAGTCATAAACCAGTTCTCAGAGACAGTATGGATGATAGGAGTGAAGCAA
ACAATTCTGATGAAGAGATTTATATTATAGAGGGAAACAAAGAAACTGAA
ACAATGGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009384XLOC_009384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016771-proteinTCONS_00016771-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016771-exon-sc0000248-1491911889:252169..252513TCONS_00016771-exon-sc0000248-1491911889:252169..252513Clytia hemisphaericaexon
TCONS_00016771-exon-sc0000248-1510915933:252169..252513TCONS_00016771-exon-sc0000248-1510915933:252169..252513Clytia hemisphaericaexon
TCONS_00016771-exon-sc0000248-1575043694:252169..252513TCONS_00016771-exon-sc0000248-1575043694:252169..252513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:252169..252513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260865	0.254384	0.590729	0	0.351791	0	0.335383	0	0	0	0	0	0.173493	0	1.77753	3.17927	0.19583	6.02159	0	0.29018	0	0	0	0	0	0	0	0.381744	0.579079	0.884985
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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