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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016784 ID=TCONS_00016784|Name=TCONS_00016784|organism=Clytia hemisphaerica|type=transcript|length=1462bp
CTCAGAATTCAAGATGCAGTAAAGAAAGCGATCAACCAAGGACACCGTTT
GTTTCCAAAGATTACGAAGATAGAAGAGACCAAGTGCTTCCAAACTACGT
CATCAGTTATGATTTGGAATTCCAGCCCTCCTTTATAGAAGTCTTTGGTC
CTGATTTCGCGACGAGCAAAAAGACGATATTGCCGAAACGAGAGTTCAAC
CCTGATGATGTATTGCAGAAGCATTTTAAGTTCGTAGAAGCTCGCTTTTT
GAACATGTTGAATAAAGTCCGCAAAACAAATGTTTACGAAATCACTAAAA
TTGACTTTTACGAGAATCCAGCTTTGAAGGAAAGATTTCTTGGAAAACAA
CGAGAGTTTGAGGATAAATATCCAAACTCATCCGAGGCTGAACCAATTTA
CGGATTCCATGGAACATATCAAAGCGACGTTGTTTGCGAGATCATGAACA
ACAATTTCAAAGCAAGTACACGAGGCAAATTTGGTGCTGGTGTGTATTTC
TCGGAACAACCTGACTACACGTTTAACTACGGTGGTAAAAACAACCTTAT
ATTAGCACGAATCCTTCCTGGAAAGACTAAAGAGTGTAATTATGTGGCAA
TGAACAGTGATTTGTGTACTGAAGGGTATGAGTCACATGGTGCGTTCAAA
AATGATGATGGTACTTTTAAAGAAGTTGTTATTTTTGATACCGAACAAAT
TTTACCATGCTATGTCATCCATTTTAAACTAGTTTAAATAACAAACGAAC
ATAACGAAGTCTTGGATGTAACAGACTTATTGACTTGAATCCAGCTTAAT
AGATTCAAATGTAAATACAATCATGGATGAAAATGGTGAGACAAGAGTAG
AATATAAGCCTCACCCTTCTCTCTCCACAAGTGCCAATGTTGAAGGGCAT
TAGAAAAGTCGGTGGGACGGTCGTTCGCACTCAACATTGCCACTGGGGGA
AAGGGAGAACTTTTCATTGTTCTCCAAGCATTTCCaatgtttttctcaaa
cattaaagtccatgattgtagaagAATAGTGGTGCCCATTGAGCTTAAAG
CCCGAAGCGCTAGAgtggaatcttcaacctttctttaTGCAAGAAAATAT
GTATTGTATTAATTTTTGCATCGTAATCTCCGGTGTCACGCGTTTTAAAT
TAAAATAGCTACCTCAatatcgtgaattttccgacccttagaggcactac
tttgaaattttctgatttttgtatccctttggaaggtgaaaaaccgacct
ttaccGTCcgcccatttttgcctaagtacccatCACCCGGGATATAAGTa
gattgattgtttttttgcctCTCATTTATGTAatttaaccaaaatttttg
gattttttctaaATCCATTTTTTATAGCAGCACTACGGTAGATATCTCAC
CTCATtgtaatctttttttcaataattcataACAATTCTTAAAAGAAATT
ATACTTTCAAAT Run BLAST on NCBI transcript from alignment at sc0000252:64377..72050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016784 ID=TCONS_00016784|Name=TCONS_00016784|organism=Clytia hemisphaerica|type=transcript|length=7674bp|location=Sequence derived from alignment at sc0000252:64377..72050+ (Clytia hemisphaerica)
CTCAGAATTCAAGATGCAGTAAAGAAAGCGATCAACCAAGGACACCGTTT
GTTTCCAAAGATTACGAAGATAGAAGAGGTGCGCAATTTGAAAGTACATG
CTAAATTTCTTGAGAAGTCTCTTCATCTATATGAAAACGAAATCAAATCC
GAATCAAAATTATTCTTTCATGGTGTAAACGATACCATGCTTGAAAGTAT
ACTGAAGGATGGTTTTACATTACCAGATGAAGGCAGGAGTTACGGTGCTG
GTATATATTTGACAAGCGATTCTACGCAGTCGCGAAATGAATCGCAAAGT
GACCAATCAGGAAAGATGCTTTACTGTCAAGTTCATCTTGGCAGATCTTG
GACTGCTAAAGAAGAATCGCCTGATTTCAATGCCGAGAGCTTACGAAAAC
TGAAGAAAGATTCAGTGTTCGTCCCGCGATCCACCAAAGAAGAGGGCGGT
GAATCTCTCTCAGATCAGTACATTGTTTTTAATCCAGACCAAGTGCTTCC
AAACTACGTCATCAGTTATGATTTGGAATTCCAGCCCTCCTTTATAGAAG
TCTTTGGTCCTGATTTCGCGACGAGCAAAAAGACGATATTGCCGAAACGA
GAGTTCAACCCTGATGATGTATTGCAGAAGCATTTTAAGTTCGTAGAAGC
TCGCTTTTTGAACATGTTGAATAAAGTCCGCAAAACAAATGTTTACGAAA
TCACTAAAATTGACTTTTACGAGAATCCAGCTTTGAAGGAAAGATTTCTT
GGAAAACAACGAGAGTTTGAGGTAAAATAGTTTTCGTTTTACAATGATCC
TTTTTAATCTATACGTTGTGAAAATAGAGGGCTGTACAGTCAGAGTACAG
TGGGcctttcgagaaaaaaaaccgtttgttggggaggtcattttttttgT
TCCAAGAGTTTGATAGAAACCCCAGTCGGAATTCTATGGAATTTTcaaaa
ccttgtaaaaactaaGAATTCTTGAGGAATTTAAATCTAACAGTACTTGA
AAATTCAGGGggtctgattattttcaaccaatatcttttgaagattttga
ccTCTTCAACAAGGTGTGTACGGGGGGCTGGAAGTGATGGATTTGAcctt
atttttggattttggccTCTAAAGGTTTTTTCTTTCGTAATTTTTACTGC
AGTGTGTATAAGATGTGACATACAAACTTTATAAACGGGACTGGAATAGT
TTTGTGGAACGgaactttttgtctttttcagtCCAGATCCCTAGTGtgaa
ttaccttatcggccaaaacttagtcggctctaagtgactaaattttggct
tggtgactaaaattaagctttccttattttccagtattttaagctttctc
ctattttccatctgcctgtaaatttagaaatggcccaaatttttagtcgg
tcttaattattagtcggcccttagttactaaattttgacgaggtgacaaa
aattagggccgactaataattaaggccgactaaaattaaggccgactaag
ttttggccgataaggtataggttcccaatgcaaaaaaaattaaattgaag
gATACAACAATCTAAGGAAGGGATTATTTGAACCGGGATTCCTTTCAGCA
TTGACACGTTATGTGACTACATGGTCATATTGCTGCAAATGAAAATTCTT
TCCACTTTCTTGTTCTTATCTAGGATAAATATCCAAACTCATCCGAGGCT
GAACCAATTTACGGATTCCATGGAACAAATAAAAGCGACGTTGTTTGTGA
GATCATGAACAACAATTTCAAAGCAAGTACACAAGGCAAATTTGGCGCTG
GTGTGTATTTCTCGGAACAACCTGACTACACGTTTAACTACGGTGGTAAA
AACAACCTTATATTAGCACGAATCCTTCCTGGAAAGACTAAAGAGTGTAA
TTATGTGGCAATGAACAGTGATTTGTGTACTGAAGGGTATGAGTCACATG
GTGCATTCAAAAATGATGATGGTACTTTTAAAGAAGTTGTTATTTTTGAT
ACTGTCGTATATCCCTTGCTTGGATACACGTAGTTTTATggtgctttttg
aaaatgtgttcgAAATATGCAAATAAGAAAACTAGAAAATAGATCAGTTc
ataaagtttgacttatagAGCTTCCTTCTTAGAGATCAAGCTTACCTTAa
gataaagaaagaagaaatctttttcttcCAATTTAATATCTTCTTAATAT
TATTCCTTAATTTACATCCATTGCCATAATCATATTTTACATTCTTACAT
CTCTTCTAATTTACAGTTCTATGTCCATCCTAAGATGGGTAAAACTACAC
TACTACTACTGTGTTACAATTGCAAAAACCTCAGTTTAAATACATTTTAG
CTTATTTATAAGTTCTGTTAATTAATATTACAATAAGTGTAGATAATAGT
TATTGTTCGTGCTAGGTGTGTGTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTGATTTCGTTGAGTG
GGTGACGAAATGTTATTTCTTCATATTAATGATGATGAGtttgttttaga
attaaaacAATCTGTTGTTGTCCCTCCTTCTTTACGGCACTTTGCAATAG
AAATATGATCAGTTTATTTTCTTGATCAATGATGATTAGGTATTGATTGG
TGATAATTAGATAAGGtacttttcaatagaaattaggtaatcatcttttt
cagtaTCAGCTTAAGAACGTTGGTTTATATGCTCTTTATTTACGTTGATA
TGTTCGGTTCAGCTTGTGAAATTACAAGGCAGTATCAAAGCGTTATCCTC
CTTGTTAATTTCGAATCATCTTGGTTTCATCATTATAAACATCAAGTTTA
atagtcaatttttttaaaggccAATACATGTTGCATCAATTTCAAAGTTA
ATTATAGTGGATGTCAATTAATGCCAAATTAATGTTCAATTCTGTTGTCt
ttgttttatataatttgttaaatattattttttaatatatatATTAGTGA
CAAAGTAAATAAGATTCAATTACggtaaaatactttttttagaaTATATA
GTCTTTTTTTTAGTCAATTTAGTTCAATATAGTTTTTTTCTCACAGTTAA
TCATATTTAATGGGGCAATATTTGGAAATGTGTCCTTCTTCTTTGCATAT
GAAATAAACTACCGATTGTTCACAATCGCCCTGTTTTTTATCGGTTTTAA
TATGCTTTATTTGgcttattaaatttttaattaaatacTTCATTGGTGGA
TCAACTGTCTCTTTCAGCAAAAGTGCATGGGTTGCCTCACGGTACGTCTC
TGGTTGCTTTATTTGTAAGTAGTTTCTGTATCCAGAATCTAGTTCAGCAA
TCATGATATCAAGTTTTGTTTGGTCGGGAACATTAAGATTTTGAGCAAGT
TTCTCAAGTCTGCACAAGTACGTGCTGATTGGCTCTTCATGTTGGTAGAT
TTGGTGTAAGAGTTGGCGTTTTCGATACTTGATTTGTGGCACGTTGAATT
TATCTGTAAGTGCTTGTTTCAAATTATGGTAGTTAGCACGGACGTCTGCG
GCAAGGGTGCGATAAAATGTAAGTGCCCTGTCTTTTAATACTCGAGTGAG
GAGTTTAGCTTTTAGCTTGTCTGTGAGCTCGTaaaattcaattgttattt
CATAGTTGACGAAAAATTCGGTTATATCATCCGCCGGGTCGAGTCCAAAT
GTTGGTAATGACGATATTTCGATTTGTCTTGGAATTACAATTTGTGCGAA
AGTAGCGGCTTCATCTTGGGCTACGGCCATTTCTGCTTGCTGTTGAAAAC
GGTTTATGTTTCTGTACAATTGCCTGTAATTGTTAGCGTTTTGCATTTTG
AAGATGAGTTGACGCGGTCAGATATTCCGGATTTACTGACGGTCTCCTTT
CTGATTATGGACATGCTTCTTTATTTCGATGTGGTTTTTGAATGTTCAAT
TAATTGGGTTGTTCTCAGTGTTTtgtcttttttacttttaatgaTCTGTC
ATCAATATGTTGGTTCATTAATTGGTTtcagttataatttttttttactt
aataATTTCATGCATCGTCTTTTGTTCATTGTATTTTAGATGTTGTCTAT
TAAAATACGTGTAttcagtttttgttttattatttctttttaaCTATACG
TTTTGCTCGAGTCTTCTTTGcttatttctttcaaattacCGCGTAATTTG
CTCGTATACATGTATACCAGTCAAATCCCTGATTTGACCCGTAGAAGCTG
AGAAGTCTCTTCATAACACTTCTGCGCCAGCTTCTACTCAGGAGtttctt
ttgtaattttataCTCCTACAAGTTCATTGTTCatatatttttaattaat
tatttgtgtaatgtttaaattcattttcttctctttcattGCCATGGTCT
TTCTTGTTGCGTTAATTTAGTCGTTATCCTTCAAGGGATCAATTTGATAT
TGATCAACAATCgatcgtttttttttattgtcaatTGGTTAAAGTTCTTT
CAGGCTTTATCATGAGGCGTTACGGTAAGATGACTTCGCGAATGTCTATC
TTCTATCTAACCTCTTTTCTCAATAATGGTAAATAATTGTTGCTGGTTCG
GTGTTATCGATTGCCATCGAGTTTATAAATATTTCTCTCTCNGTTGCTGG
TTCGGTGTTATCGATTGCCATCGAATTTATAAATAACTCTCTCTTTCTCT
TTGAATATCGTAATCGGTGTAATAAATATCGCTTAATAAAATATCTCAAT
TCGGTAACGAATATCAATTTCTCTGTCTCCAGACAGGAATACCATCGTAA
ATAAACCATATCTCATTCAATTGTTTCCACGAACTTAAACATCCGAACAA
AGGTAAAATAACCTTTTTACTCTTACGTTGACATTTTCCTGTGCACAATG
GGATGCTCAACTCGTTGATTGATATCATATTAATTAGGCTGAAACCAAGT
AACCTCTACTTAGTTATCCGTCGATACCGCGAATCTATGCCAATCGGGCA
TATACATACAGCCTTAACTTAGGTTTTCAATTTCATTCTCACTTACAGCG
CGTAGGATATCACAAAACATACCATGTAAAACATTTAGCATTCATTATAT
AAAAACTCTATTGATGGAACAAACATGTAATATTCTTTTAACAAGTTGCA
AGTTGGCGTCTCCGGGCCCTGGAACACTCAACCTCTTATCAATTTAATAT
CACATCTTGGTTCTtgaataaatctttttcaaagttaaatacaatcaaaa
tgaaatattgGTCAAACGGAACTTACAATGTTCTTCAAACTCACGCGATC
TCTCGTCACTCTCTCACGCTTTCACTTATTTTCACGTCATGTCTTCATCA
TCCCGTTTCATATTTCTCTGATGTTTCTAGTTAAGTTTGGGATATTTGAG
ACCAAAAATATATACACTATTTACACAATCGTTGTAGATTCTCTCTTCTC
TACTTCTCTCATCTCTcattcaaaaaaggaaaaatatcacTTACAGTTTT
GGGGACTATCTTTGAAGTCTAAAAGAAATACTGTTGGAACAAAAATATTA
ATATACCACTACAACAAACAAAGTCCACTTCTTGGAATAgaataaaatca
taaacaaCACAGATTTCAACTACTGTTCAAACgcaaaagaaatgaaatac
aAAATACTCACTAAAATTGAAGGTCTATAAATCGAAACTTTATCTCGGAC
TTGAACCTCCATGTCGTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaggccgactaa
gttttggccgataaggtataggttcccaatgcaaaaaaaattaaattgaa
ggATACAACAATCTAAGGAAGGGATTATTTGAACCGGGATTCCTTTCAGC
ATTGACACGTTATGTGACTACATGGTCATATTGCTGCAAATGAAAATTCT
TTCCACTTTCTTGTTCTTATCTAGGATAAATATCCAAACTCATCCGAGGC
TGAACCAATTTACGGATTCCATGGAACATATCAAAGCGACGTTGTTTGCG
AGATCATGAACAACAATTTCAAAGCAAGTACACGAGGCAAATTTGGTGCT
GGTGTGTATTTCTCGGAACAACCTGACTACACGTTTAACTACGGTGGTAA
AAACAACCTTATATTAGCACGAATCCTTCCTGGAAAGACTAAAGAGTGTA
ATTATGTGGCAATGAACAGTGATTTGTGTACTGAAGGGTATGAGTCACAT
GGTGCGTTCAAAAATGATGATGGTACTTTTAAAGAAGTTGTTATTTTTGA
TACCGAACAAATTTTACCATGCTATGTCATCCATTTTAAACTAGTTTAAA
TAACAAACGAACATAACGAAGTCTTGGATGTAACAGACTTATTGACTTGA
ATCCAGCTTAATAGATTCAAATGTAAATACAATCATGGATGAAAATGGTG
AGACAAGAGTAGAATATAAGCCTCACCCTTCTCTCTCCACAAGTGCCAAT
GTTGAAGGGCATTAGAAAAGTCGGTGGGACGGTCGTTCGCACTCAACATT
GCCACTGGGGGAAAGGGAGAACTTTTCATTGTTCTCCAAGCATTTCCaat
gtttttctcaaacattaaagtccatgattgtagaagAATAGTGGTGCCCA
TTGAGCTTAAAGCCCGAAGCGCTAGAgtggaatcttcaacctttctttaT
GCAAGAAAATATGTATTGTATTAATTTTTGCATCGTAATCTCCGGTGTCA
CGCGTTTTAAATTAAAATAGCTACCTCAatatcgtgaattttccgaccct
tagaggcactactttgaaattttctgatttttgtatccctttggaaggtg
aaaaaccgacctttaccGTCcgcccatttttgcctaagtacccatCACCC
GGGATATAAGTagattgattgtttttttgcctCTCATTTATGTAatttaa
ccaaaatttttggattttttctaaATCCATTTTTTATAGCAGCACTACGG
TAGATATCTCACCTCATtgtaatctttttttcaataattcataACAATTC
TTAAAAGAAATTATACTTTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016784-exon-sc0000252-1491911889:64377..64454 | TCONS_00016784-exon-sc0000252-1491911889:64377..64454 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1510915933:64377..64454 | TCONS_00016784-exon-sc0000252-1510915933:64377..64454 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1575043694:64377..64454 | TCONS_00016784-exon-sc0000252-1575043694:64377..64454 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1491911889:64864..65147 | TCONS_00016784-exon-sc0000252-1491911889:64864..65147 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1510915933:64864..65147 | TCONS_00016784-exon-sc0000252-1510915933:64864..65147 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1575043694:64864..65147 | TCONS_00016784-exon-sc0000252-1575043694:64864..65147 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1491911889:70951..72050 | TCONS_00016784-exon-sc0000252-1491911889:70951..72050 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1510915933:70951..72050 | TCONS_00016784-exon-sc0000252-1510915933:70951..72050 | Clytia hemisphaerica | exon |
| TCONS_00016784-exon-sc0000252-1575043694:70951..72050 | TCONS_00016784-exon-sc0000252-1575043694:70951..72050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:64377..72050 + |
Blast
The following BLAST results are available for this feature:
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