TCONS_00016785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016785
Unique NameTCONS_00016785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016785 ID=TCONS_00016785|Name=TCONS_00016785|organism=Clytia hemisphaerica|type=transcript|length=498bp
AAGAGGTCAAGGTCAAGTAGGAACAGAAAGATACCTTCAATTCCATCCCG
AAGGTTCCAGAATTTACAAGCTCTTCCAAACAAAGGATTACCAAGACAAG
AACAGAGATTATATTGATTTTTATCAATCAGAGGTGGAGATCTATAGCTC
ACAAGGACATGTGATGCTATCAGATACAGCAACCAGGGCTGTCGTTTTTC
CAGTTGACAGTTTGGCACCTGCAACTCGGAGTAGAAAGCGACAGAGAGAT
GTATTACAGGAAGCCAGCAATGAAGCTAGTGGTGAACAAcaagGAAAACG
GACCTGAAGATCTATACGAAGCAGACAAAGAGCTTTACTGGAAGATCATG
CGACGAGTTCAACATGGAAGGAGACGCAAAGATGGAGGACATGATGGAGA
CCAGGCACCAGTATCAGGCTATTTGCAACACATCAAGAGGATAATTGGTC
AAACATCATCAGGGTTTCTGTACACACAGCAGTGGCCAAAACAACCGA
Run BLAST on NCBI

protein sequence of TCONS_00016785-protein

>TCONS_00016785-protein ID=TCONS_00016785-protein|Name=TCONS_00016785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
RGQGQVGTERYLQFHPEGSRIYKLFQTKDYQDKNRDYIDFYQSEVEIYSS
QGHVMLSDTATRAVVFPVDSLAPATRSRKRQRDVLQEASNEASGEQQGKR
T
Run BLAST on NCBI

transcript from alignment at sc0000252:77267..81231+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016785 ID=TCONS_00016785|Name=TCONS_00016785|organism=Clytia hemisphaerica|type=transcript|length=3965bp|location=Sequence derived from alignment at sc0000252:77267..81231+ (Clytia hemisphaerica)
AAGAGGTCAAGGTCAAGTAGGAACAGAAAGGTAATTTATTCACTCAAGTT
TCATCTAGGTGTTTTCAAAAGGATAGAGACTTTTAATAAAGTATCTTATA
TTATGGCTTTTACAACATTTTATTGTTAATTCCCAGTATTTTTCAAGAAG
ATGTAACCGACTCATTTAGAAAATCTAACAAATGAAATTATTCTCTTTCT
CCGAAAGTGGCAGAGTCCTATAATCTATTCTCAAAGATATCAAAAATACC
AACAGtcagtgaaaaaatttgacCTAGAAGTACCATGCCATGATAGTAAA
TTTGAAATGGATCTCCAATTACATTTTATTACACTCCATGCATCAGTCTA
CAGCTTTATTGAATTGAGAAGTGCATTTTTGGCATACAGACTAATTTTAT
GTGCCAAAGGAAGAGGCTTCTTATTGGACCtacccggtggaggtcctata
aataaACCCATTTTCTTATGtgcgttcgttaccagcttttctcaagattg
gctcattctatctaatttttctgatttttggcacaaaggtgtaCGACTAA
TCCTCAAATGTGACAGAGcttgattttcgagaaaaaaattttttgggcaa
atttgggccaaaaaaacagataaaagacAGGTTTATTGGACTTATCTAtg
gttttttctgaatttttgcacgaaagtagtGTATCCTCGTAGGTAACaga
tgggtcaagcagatttttgcaaaaaaatgcatgtttatctataagaatca
ctattaatcaCTATAAACCACTATTAATANatgcatgtttatctataaga
accactattAATCACTATAaaccactattaataagcataaccaggtaggt
ccataaaagtatcgcttgttttttattttttcatcactttttattttctt
gtgtttttcagATACCTTCAATTCCATCCCGAAGGTTCCAGAATTTACAA
GCTCTTCCAAACAAAGGATTACCAAGACAAGAACAGAGATTATATTGATT
TTTATCAATCAGAGGTGGAGATCTATAGCTCACAAGGACATGTGATGCTA
TCAGATACAGCAACCAGGGCTGTCGTTTTTCCAGTTGACAGTAAGGacaa
aatgctattttttgactttgaagaGATCAGTTAGACTTTGAAATTCAcag
atttgttttcaaagtcTGATTTTCAAGATGCTggaaatctttgtttttca
agattttcattgaactttttcctaacatttctttgttttttttttcacac
aaaaacattattgataacaatgcccatcatcaagcatgattcaattgtca
ataaaactgatttttgaggCCGATACCTTCTAGAAATTGCTGAAAAAGCG
GAgaatcgccggaaaaacggtttctcttgaatttctcgagtatttctcat
tatattttttcatgaaattttgcacagtgatgcgaaatagcaatacctaa
aatgtgatggagcctgatattttggagaaaaaaagattgtggttaaaaat
gccagaaatatgctggaaaaactgtttttttggcattatgaaatttaatg
cgttatgcatttttgctaaacactatattttctgactgattattttaatt
tttctccttattgctatctaaatttcatcatcaggtagttccattcagca
tctagctttttttctAGCTTGAAATCTCTTCGTGATTTCTACTTACTGTT
TTAAATGCATGCCTGACCCCATTAAATTGTTTCTGGAAGCTAGACTCAAG
TTTTCAAGGTTATTGTACTGTATCTGTTGTAAACTACAAGTTAGATTTAA
AAGAATATCTCTTGACAGATTATAAAGTATGAAGTTTGTCGACCaattaa
agaaacttttttgaaaaaagattttgaaaacaatttattaTGACAACCGA
TTCATATTACCACCTTGggaacttaaaatttttgcAATCTGATGGTAAAT
TCTTACTTGTGAATCTAATTGGCTTTCAGAATATCTTGAGTCTTTGAAGG
AGTCTTGATCTTTTCTACATTAAAAGAGCTATAACAATTCAAAGTTTAAG
TCACTgttcaaaatatattaaaaGCCTTTTATGAAATTCCAATTAAGTGA
TGATTTTTACCTTTAGATTTTCTATTTAATCTTGTCTTATCTGTTTTGTA
ttgtgtattttgttgttgttgtttcatTCTTTTGCATTGATAGGCTTGTA
CAGCAAGCTCTTTCTAATAAGACAAAAAATTGTCCAATAGACCCTGTATT
TTGCACATGGGAAATTCTTCGTAATCTTTACTTAAAATGGTCTAggaaat
taatgaaatttacaTAGTACACATAATCTCATATTTACTGTTTGTCCTTG
CTATTCTGTGTTATATTTAGTTATACCTAGCGTGAGAGAATAAAAATATC
ATACATAGaaatacaaaatatttcattatttctttCTGTCTAGGTTTGGC
ACCTGCAACTCGGAGTAGAAAGCGACAGAGAGGTTAGAAAATTAACTTTG
CACATCTTTGCTCTAGAGATACTCTTTATCCTCTTATTGTACTATTTCAA
CCCCCTTTGCAATTGGTCCTCTTATccatttatgaaatttggaaattttt
ccaaccctctGTTCACCCCATTTATTTGATACCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTATTCTGTGTTATATTTAGTTATACCTAGCGTGAGAGAATAAAA
ATATCAtacataaaaatacaaaatatttcattatttctttCTGTCTAGGT
TTGGCACCTGCAACTCGGAGTAGAAAGCGACAGAGAGGTTAGAAAATTAA
CTTTGCACATCTTTGCTCTAGAGATACTCTTTATCCTCTTATTGTACTAT
TACAACCCCCTTTGCAATTGGTCCTCTTATccatttatgaaatttggaaa
tttttccaaccctctGTTCACCCCATTTATTTGATACCATTGcatgtttt
ttatttcactCTAGATGTATTACAGGAAGCCAGCAATGAAGCTAGTGGTG
AACAAcaaggtgaattttttttattgtcttttttattaatttatatCTAT
AATAAAATCATTGTAGTTCTGCAGTGTCACTTTGAAATCCTATATACCAT
CAACAATCATTTTAAGTTGAAAGAAAAGATCAACTCTTGATTTCATACCA
ACAGATTTTAttcccaaccgcgaaatttaatccccgcgaaagtttatccc
attaaagtatacttGTTGCGATTCAGCTCTCATTCATCTTCTGAAATTTC
CTTTTTCCAGGAAAACGGACCTGAAGATCTATACGAAGCAGACAAAGAGC
TTTACTGGAAGATCATGCGACGAGTTCAACATGGAAGGAGACGCAAAGAT
GGAGGACATGATGGAGACCAGGCACCAGTATCAGGCTATTTGCAACACAT
CAAGAGGATAATTGGTCAAACATCATCAGGGTTTCTGTACACACAGCAGT
GGCCAAAACAACCGA

Coding sequence (CDS) from alignment at sc0000252:77267..81231+

>TCONS_00016785 ID=TCONS_00016785|Name=TCONS_00016785|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000252:77267..81231+ (Clytia hemisphaerica)
AGAGGTCAAGGTCAAGTAGGAACAGAAAGATACCTTCAATTCCATCCCGA
AGGTTCCAGAATTTACAAGCTCTTCCAAACAAAGGATTACCAAGACAAGA
ACAGAGATTATATTGATTTTTATCAATCAGAGGTGGAGATCTATAGCTCA
CAAGGACATGTGATGCTATCAGATACAGCAACCAGGGCTGTCGTTTTTCC
AGTTGACAGTTTGGCACCTGCAACTCGGAGTAGAAAGCGACAGAGAGATG
TATTACAGGAAGCCAGCAATGAAGCTAGTGGTGAACAAcaagGAAAACGG
ACCTGAAGAGGTCAAGGTCAAGTAGGAACAGAAAGATACCTTCAATTCCA
TCCCGAAGGTTCCAGAATTTACAAGCTCTTCCAAACAAAGGATTACCAAG
ACAAGAACAGAGATTATATTGATTTTTATCAATCAGAGGTGGAGATCTAT
AGCTCACAAGGACATGTGATGCTATCAGATACAGCAACCAGGGCTGTCGT
TTTTCCAGTTGACAGTTTGGCACCTGCAACTCGGAGTAGAAAGCGACAGA
GAGATGTATTACAGGAAGCCAGCAATGAAGCTAGTGGTGAACAAcaagGA
AAACGGACCTGAAGAGGTCAAGGTCAAGTAGGAACAGAAAGATACCTTCA
ATTCCATCCCGAAGGTTCCAGAATTTACAAGCTCTTCCAAACAAAGGATT
ACCAAGACAAGAACAGAGATTATATTGATTTTTATCAATCAGAGGTGGAG
ATCTATAGCTCACAAGGACATGTGATGCTATCAGATACAGCAACCAGGGC
TGTCGTTTTTCCAGTTGACAGTTTGGCACCTGCAACTCGGAGTAGAAAGC
GACAGAGAGATGTATTACAGGAAGCCAGCAATGAAGCTAGTGGTGAACAA
caagGAAAACGGACCTGAAGAGGTCAAGGTCAAGTAGGAACAGAAAGATA
CCTTCAATTCCATCCCGAAGGTTCCAGAATTTACAAGCTCTTCCAAACAA
AGGATTACCAAGACAAGAACAGAGATTATATTGATTTTTATCAATCAGAG
GTGGAGATCTATAGCTCACAAGGACATGTGATGCTATCAGATACAGCAAC
CAGGGCTGTCGTTTTTCCAGTTGACAGTTTGGCACCTGCAACTCGGAGTA
GAAAGCGACAGAGAGATGTATTACAGGAAGCCAGCAATGAAGCTAGTGGT
GAACAAcaagGAAAACGGACCTGAAGAGGTCAAGGTCAAGTAGGAACAGA
AAGATACCTTCAATTCCATCCCGAAGGTTCCAGAATTTACAAGCTCTTCC
AAACAAAGGATTACCAAGACAAGAACAGAGATTATATTGATTTTTATCAA
TCAGAGGTGGAGATCTATAGCTCACAAGGACATGTGATGCTATCAGATAC
AGCAACCAGGGCTGTCGTTTTTCCAGTTGACAGTTTGGCACCTGCAACTC
GGAGTAGAAAGCGACAGAGAGATGTATTACAGGAAGCCAGCAATGAAGCT
AGTGGTGAACAAcaagGAAAACGGACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009396XLOC_009396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016785-exon-sc0000252-1491911889:77267..77296TCONS_00016785-exon-sc0000252-1491911889:77267..77296Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1510915933:77267..77296TCONS_00016785-exon-sc0000252-1510915933:77267..77296Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1575043694:77267..77296TCONS_00016785-exon-sc0000252-1575043694:77267..77296Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1491911889:78178..78356TCONS_00016785-exon-sc0000252-1491911889:78178..78356Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1510915933:78178..78356TCONS_00016785-exon-sc0000252-1510915933:78178..78356Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1575043694:78178..78356TCONS_00016785-exon-sc0000252-1575043694:78178..78356Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1491911889:79710..79748TCONS_00016785-exon-sc0000252-1491911889:79710..79748Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1510915933:79710..79748TCONS_00016785-exon-sc0000252-1510915933:79710..79748Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1575043694:79710..79748TCONS_00016785-exon-sc0000252-1575043694:79710..79748Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1491911889:80731..80775TCONS_00016785-exon-sc0000252-1491911889:80731..80775Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1510915933:80731..80775TCONS_00016785-exon-sc0000252-1510915933:80731..80775Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1575043694:80731..80775TCONS_00016785-exon-sc0000252-1575043694:80731..80775Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1491911889:81027..81231TCONS_00016785-exon-sc0000252-1491911889:81027..81231Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1510915933:81027..81231TCONS_00016785-exon-sc0000252-1510915933:81027..81231Clytia hemisphaericaexon
TCONS_00016785-exon-sc0000252-1575043694:81027..81231TCONS_00016785-exon-sc0000252-1575043694:81027..81231Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016785-proteinTCONS_00016785-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:77267..81231 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47312	1.19711	0.277991	0.271971	0.331098	0.130819	0.315656	0.591026	0.310343	0.256274	0.870609	0	0.0816441	0	0.557659	0.972487	0.64509	0.377827	0	0.273111	0	0.173681	0.563018	0.255933	0.790814	0.941044	0	0.179645	0	0.138822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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