TCONS_00016786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016786
Unique NameTCONS_00016786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016786 ID=TCONS_00016786|Name=TCONS_00016786|organism=Clytia hemisphaerica|type=transcript|length=790bp
tgGTACGAGCACACCATTATTCCACAATTGTTACATGCGGATTTCTGTGT
GGGACGTTACCCTCAATATCTCCGCGATATGCATGAAGTGTACAACAGAA
GAAATTCAGATGTTGTGTTTGGGCCTAAGCCATCTGAGTTCGCTGAGAAT
CAAAGTTATGTTGTCATGGTGTTCACTCCTGAGTCTTTTGGTGATTCTGT
AAAGCCTTTGGTTGACGAATTTCCGCGATCCATAGGCCAGGCACGCTCCA
TCTTGTGGCAGATTGCCCACGGCCTAGCAGACCTCGAAGCTGATCCATTC
AATGGTGAGATTCGTGATCTGCACCCGATGAACTTGGTTGTTGAGCAGGT
TCCACGACAAACCATGTGGCGTGGTGATAACCATTACTGTAACTATGGAG
TACAAGTGGGTATAGTGAACACCAGCAGTATGCGACTGGACCTCTCCGGT
GGTACAGATGGTATTGAGACGAACTTCTTTGACATCGGGCGTCATCAACA
TCTATTTGAAGGAAATACCATACTCGAGAAGACATACAGAGAAATGCGAT
GGGTGCTTGACAATGATTGGGAGAGGTTTGAACCAAAGACAAATGTGCTC
TGGTTGAGTTACCTGGCAGCCTTATTTTCCCGGGTCGTGGAACCTAAGGG
GCCAGCTGCTCAATTGGCTGGTTTGGCTCAGACCTTCAAGAAGTACAGAA
GTGCTACTGAAATTTGCCAATACTTGTAGAAGGTTGTAAGTTATCACTTG
TTATTGTGTTTGTTATTGagtgagcaaaaaaatgcattTG
Run BLAST on NCBI

protein sequence of TCONS_00016786-protein

>TCONS_00016786-protein ID=TCONS_00016786-protein|Name=TCONS_00016786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
WYEHTIIPQLLHADFCVGRYPQYLRDMHEVYNRRNSDVVFGPKPSEFAEN
QSYVVMVFTPESFGDSVKPLVDEFPRSIGQARSILWQIAHGLADLEADPF
NGEIRDLHPMNLVVEQVPRQTMWRGDNHYCNYGVQVGIVNTSSMRLDLSG
GTDGIETNFFDIGRHQHLFEGNTILEKTYREMRWVLDNDWERFEPKTNVL
WLSYLAALFSRVVEPKGPAAQLAGLAQTFKKYRSATEICQYL
Run BLAST on NCBI

transcript from alignment at sc0000252:83524..85084+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016786 ID=TCONS_00016786|Name=TCONS_00016786|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0000252:83524..85084+ (Clytia hemisphaerica)
tgGTACGAGCACACCATTATTCCACAATTGTTACAGTAAGTTACATTTTT
AGTTATTAATGATTAGTGGACTTAGAAACCAGTTAAAAAGTAAGAATATT
AAAAGCAGATTGGTTTACGACATTCTGGTCcttaattttaattatcatcC
TCAGGACCTTGATTTATATAGTTATGTAACTTTTCTTATTTTGTAGTGCG
GATTTCTGTGTGGGACGTTACCCTCAATATCTCCGCGATATGCATGAAGT
GTACAACAGAAGAAATTCAGATGTTGTGTTTGGGCCTAAGCCATCTGAGT
TCGCTGAGAATCAAAGTTATGTTGTCATGGTGTTCACTCCTGAGTCTTTT
GGTGATTCTGTAAAGCCTTTGGTTGACGAATTTCCGCGATCCATAGGCCA
GGCACGCTCCATCTTGTGGCAGATTGCCCACGGCCTAGCAGACCTCGAAG
CTGATCCATTCAATGGTGAGATTCGTGATCTGCACCCGATGAACTTGGTT
GTTGAGCAGGTAggcttttttctttattttccaaCTTTTGCCTCAAGGGA
ACATATTATGAAAGAATCACAAGGGCCTCTTAATTTGAATACCTTTACAA
TGAGGTTCGTTTGAATCTttaatttaaaatattaaactaaattTCAGAAA
AGCctgaattcaattcaattcaatttatcGTTTTGGCTTAACCCTTTTAG
GTTCCACGACAAACCATGTGGCGTGGTGATAACCATTACTGTAACTATGG
AGTACAAGTGGGTATAGTGAACACCAGCAGTATGCGACTGGACCTCTCCG
GTGGTACAGATGGTATTGAGACGAACTTCTTTGACATCGGGCGTCATCAA
CATCTATTTGAAGGAAATACCATACTCGAGAAGACATACAGAGAAATGCG
ATGGGTGCTTGAGTAAGAATCATTCACACTTGTTTACAAAcaactttgat
aaaaaattggcTCATGCTCTGCTGTTAGCATTCTTCACAGGCTTTAAATG
TCTCTATGAAGTTCGCTTTCTTAGTATAAGTTTTTTAAATCTGAGGAGCA
GGCTATTCCTAACTTTGTCTTCAAGTTCAGCCTTGTTTTcccataaaatt
gtttttataaaagagtATTTTAAACCTTTGAAGATGGGTGTCTATCTTGT
CAATTTGTGTTTTAGATTTTCAGGGAGTATAAGTGATTTGGTCATATTAT
CCGTTTANTTGTCAATTTGTTGTTTTAGATTTTCAGGGAGTATAAGTGAT
TTGGTCGTATTATCCGTTTAGGAAATGTCATGATGACCTTTAGGACCATT
CGAAATAAGACTCTGTTGTTCTATTTTTCAGCAATGATTGGGAGAGGTTT
GAACCAAAGACAAATGTGCTCTGGTTGAGTTACCTGGCAGCCTTATTTTC
CCGGGTCGTGGAACCTAAGGGGCCAGCTGCTCAATTGGCTGGTTTGGCTC
AGACCTTCAAGAAGTACAGAAGTGCTACTGAAATTTGCCAATACTTGTAG
AAGGTTGTAAGTTATCACTTGTTATTGTGTTTGTTATTGagtgagcaaaa
aaatgcattTG

Coding sequence (CDS) from alignment at sc0000252:83524..85084+

>TCONS_00016786 ID=TCONS_00016786|Name=TCONS_00016786|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at sc0000252:83524..85084+ (Clytia hemisphaerica)
tgGTACGAGCACACCATTATTCCACAATTGTTACATGCGGATTTCTGTGT
GGGACGTTACCCTCAATATCTCCGCGATATGCATGAAGTGTACAACAGAA
GAAATTCAGATGTTGTGTTTGGGCCTAAGCCATCTGAGTTCGCTGAGAAT
CAAAGTTATGTTGTCATGGTGTTCACTCCTGAGTCTTTTGGTGATTCTGT
AAAGCCTTTGGTTGACGAATTTCCGCGATCCATAGGCCAGGCACGCTCCA
TCTTGTGGCAGATTGCCCACGGCCTAGCAGACCTCGAAGCTGATCCATTC
AATGGTGAGATTCGTGATCTGCACCCGATGAACTTGGTTGTTGAGCAGGT
TCCACGACAAACCATGTGGCGTGGTGATAACCATTACTGTAACTATGGAG
TACAAGTGGGTATAGTGAACACCAGCAGTATGCGACTGGACCTCTCCGGT
GGTACAGATGGTATTGAGACGAACTTCTTTGACATCGGGCGTCATCAACA
TCTATTTGAAGGAAATACCATACTCGAGAAGACATACAGAGAAATGCGAT
GGGTGCTTGACAATGATTGGGAGAGGTTTGAACCAAAGACAAATGTGCTC
TGGTTGAGTTACCTGGCAGCCTTATTTTCCCGGGTCGTGGAACCTAAGGG
GCCAGCTGCTCAATTGGCTGGTTTGGCTCAGACCTTCAAGAAGTACAGAA
GTGCTACTGAAATTTGCCAATACTTGTAGtgGTACGAGCACACCATTATT
CCACAATTGTTACATGCGGATTTCTGTGTGGGACGTTACCCTCAATATCT
CCGCGATATGCATGAAGTGTACAACAGAAGAAATTCAGATGTTGTGTTTG
GGCCTAAGCCATCTGAGTTCGCTGAGAATCAAAGTTATGTTGTCATGGTG
TTCACTCCTGAGTCTTTTGGTGATTCTGTAAAGCCTTTGGTTGACGAATT
TCCGCGATCCATAGGCCAGGCACGCTCCATCTTGTGGCAGATTGCCCACG
GCCTAGCAGACCTCGAAGCTGATCCATTCAATGGTGAGATTCGTGATCTG
CACCCGATGAACTTGGTTGTTGAGCAGGTTCCACGACAAACCATGTGGCG
TGGTGATAACCATTACTGTAACTATGGAGTACAAGTGGGTATAGTGAACA
CCAGCAGTATGCGACTGGACCTCTCCGGTGGTACAGATGGTATTGAGACG
AACTTCTTTGACATCGGGCGTCATCAACATCTATTTGAAGGAAATACCAT
ACTCGAGAAGACATACAGAGAAATGCGATGGGTGCTTGACAATGATTGGG
AGAGGTTTGAACCAAAGACAAATGTGCTCTGGTTGAGTTACCTGGCAGCC
TTATTTTCCCGGGTCGTGGAACCTAAGGGGCCAGCTGCTCAATTGGCTGG
TTTGGCTCAGACCTTCAAGAAGTACAGAAGTGCTACTGAAATTTGCCAAT
ACTTGTAGtgGTACGAGCACACCATTATTCCACAATTGTTACATGCGGAT
TTCTGTGTGGGACGTTACCCTCAATATCTCCGCGATATGCATGAAGTGTA
CAACAGAAGAAATTCAGATGTTGTGTTTGGGCCTAAGCCATCTGAGTTCG
CTGAGAATCAAAGTTATGTTGTCATGGTGTTCACTCCTGAGTCTTTTGGT
GATTCTGTAAAGCCTTTGGTTGACGAATTTCCGCGATCCATAGGCCAGGC
ACGCTCCATCTTGTGGCAGATTGCCCACGGCCTAGCAGACCTCGAAGCTG
ATCCATTCAATGGTGAGATTCGTGATCTGCACCCGATGAACTTGGTTGTT
GAGCAGGTTCCACGACAAACCATGTGGCGTGGTGATAACCATTACTGTAA
CTATGGAGTACAAGTGGGTATAGTGAACACCAGCAGTATGCGACTGGACC
TCTCCGGTGGTACAGATGGTATTGAGACGAACTTCTTTGACATCGGGCGT
CATCAACATCTATTTGAAGGAAATACCATACTCGAGAAGACATACAGAGA
AATGCGATGGGTGCTTGACAATGATTGGGAGAGGTTTGAACCAAAGACAA
ATGTGCTCTGGTTGAGTTACCTGGCAGCCTTATTTTCCCGGGTCGTGGAA
CCTAAGGGGCCAGCTGCTCAATTGGCTGGTTTGGCTCAGACCTTCAAGAA
GTACAGAAGTGCTACTGAAATTTGCCAATACTTGTAGtgGTACGAGCACA
CCATTATTCCACAATTGTTACATGCGGATTTCTGTGTGGGACGTTACCCT
CAATATCTCCGCGATATGCATGAAGTGTACAACAGAAGAAATTCAGATGT
TGTGTTTGGGCCTAAGCCATCTGAGTTCGCTGAGAATCAAAGTTATGTTG
TCATGGTGTTCACTCCTGAGTCTTTTGGTGATTCTGTAAAGCCTTTGGTT
GACGAATTTCCGCGATCCATAGGCCAGGCACGCTCCATCTTGTGGCAGAT
TGCCCACGGCCTAGCAGACCTCGAAGCTGATCCATTCAATGGTGAGATTC
GTGATCTGCACCCGATGAACTTGGTTGTTGAGCAGGTTCCACGACAAACC
ATGTGGCGTGGTGATAACCATTACTGTAACTATGGAGTACAAGTGGGTAT
AGTGAACACCAGCAGTATGCGACTGGACCTCTCCGGTGGTACAGATGGTA
TTGAGACGAACTTCTTTGACATCGGGCGTCATCAACATCTATTTGAAGGA
AATACCATACTCGAGAAGACATACAGAGAAATGCGATGGGTGCTTGACAA
TGATTGGGAGAGGTTTGAACCAAAGACAAATGTGCTCTGGTTGAGTTACC
TGGCAGCCTTATTTTCCCGGGTCGTGGAACCTAAGGGGCCAGCTGCTCAA
TTGGCTGGTTTGGCTCAGACCTTCAAGAAGTACAGAAGTGCTACTGAAAT
TTGCCAATACTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009397XLOC_009397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016786-exon-sc0000252-1491911889:83524..83558TCONS_00016786-exon-sc0000252-1491911889:83524..83558Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1510915933:83524..83558TCONS_00016786-exon-sc0000252-1510915933:83524..83558Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1575043694:83524..83558TCONS_00016786-exon-sc0000252-1575043694:83524..83558Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1491911889:83720..84032TCONS_00016786-exon-sc0000252-1491911889:83720..84032Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1510915933:83720..84032TCONS_00016786-exon-sc0000252-1510915933:83720..84032Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1575043694:83720..84032TCONS_00016786-exon-sc0000252-1575043694:83720..84032Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1491911889:84224..84435TCONS_00016786-exon-sc0000252-1491911889:84224..84435Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1510915933:84224..84435TCONS_00016786-exon-sc0000252-1510915933:84224..84435Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1575043694:84224..84435TCONS_00016786-exon-sc0000252-1575043694:84224..84435Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1491911889:84855..85084TCONS_00016786-exon-sc0000252-1491911889:84855..85084Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1510915933:84855..85084TCONS_00016786-exon-sc0000252-1510915933:84855..85084Clytia hemisphaericaexon
TCONS_00016786-exon-sc0000252-1575043694:84855..85084TCONS_00016786-exon-sc0000252-1575043694:84855..85084Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016786-proteinTCONS_00016786-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:83524..85084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.366379	0.595463	0.207417	0	0.164694	0.130144	0.0785064	0.22049	0	0	0	0.0406678	0.0406112	0.0843504	0	0.148841	0.32088	0	0	0	0.0590394	0	0	0.318264	0.458926	0.702138	0.251189	0	0	0.207157
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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