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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016788 ID=TCONS_00016788|Name=TCONS_00016788|organism=Clytia hemisphaerica|type=transcript|length=505bp
CAGCTTCTTCCGCTGCAATGCCGCTCACTTCAGGCGCTGTTTTCAACTCG
ACCACATTAACTACACCAGCCGCCAGATCGAATCGCCTTGCCAGTAGCAA
AAGCAACCAGAACGCACACATAACCACCTTTNCGAATCGTCTTGCCAGTA
GTAAAAGCAACCAGAACGCACACATTACCACCTTCGACGGCCGTATTGAC
GTCAAAGCTATCCATTCGCCCTCACAAGTAGATGCTTTCGATTTCGACAA
CATGTATATCAGCTGTCTGGATATCGAGGATGGCTTACAACCAGGTATTT
TTTCAAGTAACTGAGGGCTGAAGAAGTTGaggttctttttttttcttcat
taagTTTAGATGCCAACCATAATTATGGGCTGAAATCTAAATCTAATGAG
ATCATAAGCggtaaatttcatttcattatttctGCTAATTATCGATTGTC
GTTTTAGCTTAAATTGGAAACTTATGGAAGGTATTCGTTTTTAACACGGC
TACCA Run BLAST on NCBI protein sequence of TCONS_00016788-protein >TCONS_00016788-protein ID=TCONS_00016788-protein|Name=TCONS_00016788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
ASSAAMPLTSGAVFNSTTLTTPAARSNRLASSKSNQNAHITTFXNRLASS
KSNQNAHITTFDGRIDVKAIHSPSQVDAFDFDNMYISCLDIEDGLQPGIF
SSN Run BLAST on NCBI transcript from alignment at sc0000252:110767..113180+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016788 ID=TCONS_00016788|Name=TCONS_00016788|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at sc0000252:110767..113180+ (Clytia hemisphaerica)
CAGCTTCTTCCGCTGCAATGCCGCTCACTTCAGGCGCTGTTTTCAACTCG
ACCACATTAACTACACCAGGTATGcgattaatatttcttttttttatagt
tCATTttataatctcatggttgattcaaattcgattgacgtcttttgctt
acgttaatttgtaattacTGTAATTACTTGTTGCactagggaaatttcaa
aatagacctcgggaaatttatcacGAATTTTCCTCATAActatgagatta
ctagtactaattcgCAAAAGTTATGGGTAGTTTTGAATACGACTCTTCGC
GTATATTCAATGGACTTCCCCAAAAATGTCGGGATGAATTAGATTATAAC
ATATTTTGTAGTGAAACTGAAAGGTATTTTTGGATCAAGGTCTCGCTAGG
AGCCTTGTATGAATTTAAAGGATTTTCATGTCTTGAATCTCAAAGTCCAG
CTATTTCCTTGGGATTTTACTCTGCTCATGACTTGATTCCAATTTAACAA
TAACTATCCTTTTGACAACTTAATAATAGACTTGCGAGAGTTTTAACCTT
GTGATAACCAACTCTGCTATTCTTTACGATCGTCAACTTTATAACAACAT
ACTTTCTcacttttaataaatatttcattatttagtatttttttataTTG
CTTATCGTTTTTAGCTGGGACGTTGCCACATCTAACTCCAAATCCTTTAA
CGCCTTGTATCTCTTAGTCATTTTCCATCGTATTGATTAACTTATCCCTA
TTCCATAGCCAGTAGCAGTAGTTACACTCCGGTCATTATTCTTTAAAGCA
ACTATCCCCTATTTGTTTAATTGATTTTAATTAGTTTTGAGTTTATTCTA
atgatattttatatatttactACTCCTGGACATTCTGCAATTCAAAGTCA
TACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTAGTTGTTATCAATAGTTGTATCAATTTTGTAGTATTTTATAGCTTAA
TCTAAATTCAAACTTTGGTTTTACACCGGTCTTGCACAAGCCACTAGCAC
TACATTCACTCAGTCTACTTTTGCCAGGCTCATATTACTCTACAACGGTA
TTTGATCGAACGTACTTGGCTTTACCAACTTTTAGCCTTCTAGTCTCTAG
TTACAACCGGTCTCAGTATTTTAATAAACATCATATTTTGTATACGCTAC
ATATATATTTATCATACTCAATTTCCAGGTGAAGAGCCAATTGTAAAACT
TTGGAGATACTGTGAAATATAtcgtttttattattattattattataaaa
gttatttttgagatTACGCCTTTCTTATCAGTTCCTCAGAATTCACAGAC
GGTCATTTTCTCTAATAGATCATCTATTCTAATAGATCATCTATTCTGCA
CAtaccacgctctgctctaaagggaGGGATATGGCGAATGTTTGGATCTG
ACTTGGTTATTCagccaaaacaatcaaaaccgcGTTAccttttgcttgaa
aatgaaagaaaaagcgactgggttctaatattTATGATTGACGGTTGTTT
CCGGTGCGATCTGCTTGGAGGTTGAGATAAATGTCAACCGCGATTGAAGA
CCGTGACCCTAAGGGTCGCTAACCTGCCATTCTATTGACCCATTGGAGCC
GTTTAATTGTACTCTGTCCAAGAAGGGCGTAACGTTAAGAGTCTCTAGGC
AGTTTTCGGTCACTATGCTTCGTCTTAATTCCTCAAAAGCACTTGTTCTA
TATATTTCTTTGTTCTCTTGATTTACAGCCGCCAGATCGAATCGCCTTGC
CAGTAGCAAAAGCAACCAGAACGCACACATAACCACCTTTNCGAATCGTC
TTGCCAGTAGTAAAAGCAACCAGAACGCACACATTACCACCTTCGACGGC
CGTATTGACGTCAAAGCTATCCATTCGCCCTCACAAGTAGATGCTTTCGA
TTTCGACAACATGTATATCAGCTGTCTGGATATCGAGGATGGCTTACAAC
CAGGTATTTTTTCAAGTAACTGAGGGCTGAAGAAGTTGaggttctttttt
tttcttcattaagTTTAGATGCCAACCATAATTATGGGCTGAAATCTAAA
TCTAATGAGATCATAAGCggtaaatttcatttcattatttctGCTAATTA
TCGATTGTCGTTTTAGCTTAAATTGGAAACTTATGGAAGGTATTCGTTTT
TAACACGGCTACCA Coding sequence (CDS) from alignment at sc0000252:110767..113180+ >TCONS_00016788 ID=TCONS_00016788|Name=TCONS_00016788|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000252:110767..113180+ (Clytia hemisphaerica)
GCTTCTTCCGCTGCAATGCCGCTCACTTCAGGCGCTGTTTTCAACTCGAC
CACATTAACTACACCAGCCGCCAGATCGAATCGCCTTGCCAGTAGCAAAA
GCAACCAGAACGCACACATAACCACCTTTNCGAATCGTCTTGCCAGTAGT
AAAAGCAACCAGAACGCACACATTACCACCTTCGACGGCCGTATTGACGT
CAAAGCTATCCATTCGCCCTCACAAGTAGATGCTTTCGATTTCGACAACA
TGTATATCAGCTGTCTGGATATCGAGGATGGCTTACAACCAGGTATTTTT
TCAAGTAACTGAGCTTCTTCCGCTGCAATGCCGCTCACTTCAGGCGCTGT
TTTCAACTCGACCACATTAACTACACCAGCCGCCAGATCGAATCGCCTTG
CCAGTAGCAAAAGCAACCAGAACGCACACATAACCACCTTTNCGAATCGT
CTTGCCAGTAGTAAAAGCAACCAGAACGCACACATTACCACCTTCGACGG
CCGTATTGACGTCAAAGCTATCCATTCGCCCTCACAAGTAGATGCTTTCG
ATTTCGACAACATGTATATCAGCTGTCTGGATATCGAGGATGGCTTACAA
CCAGGTATTTTTTCAAGTAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016788-exon-sc0000252-1491911889:110767..110835 | TCONS_00016788-exon-sc0000252-1491911889:110767..110835 | Clytia hemisphaerica | exon |
| TCONS_00016788-exon-sc0000252-1510915933:110767..110835 | TCONS_00016788-exon-sc0000252-1510915933:110767..110835 | Clytia hemisphaerica | exon |
| TCONS_00016788-exon-sc0000252-1575043694:110767..110835 | TCONS_00016788-exon-sc0000252-1575043694:110767..110835 | Clytia hemisphaerica | exon |
| TCONS_00016788-exon-sc0000252-1491911889:112745..113180 | TCONS_00016788-exon-sc0000252-1491911889:112745..113180 | Clytia hemisphaerica | exon |
| TCONS_00016788-exon-sc0000252-1510915933:112745..113180 | TCONS_00016788-exon-sc0000252-1510915933:112745..113180 | Clytia hemisphaerica | exon |
| TCONS_00016788-exon-sc0000252-1575043694:112745..113180 | TCONS_00016788-exon-sc0000252-1575043694:112745..113180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:110767..113180 + |
Blast
The following BLAST results are available for this feature:
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