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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016791 ID=TCONS_00016791|Name=TCONS_00016791|organism=Clytia hemisphaerica|type=transcript|length=2221bp
GAAAGACACAAAATGACAGTTTTTCGATGTCAGCGTTATTTGAAGAAAGA
GCAATCTGAGTAAATATAGAAAAAGAGGAAAAGTTGAAATAACTTTGAGG
TGGCCATTCAATCGAAGAGCTTTAAAAGGATAGTCGTGttagaaaaaaga
agacattttcAGTGACAAAATGGTTTTgagcgaaaaagtgaaaatctcaC
TCCTAAAAGATTTTACGATCTTTGGCACGTTACTTCGACCCAGGAAGTTG
AGAAAAGGTGTCAAGAAGAAGACACCAAAACGAGGCGACGAAAACCAATC
ATCTTCCAAACAAAAAGATGTTGACGTCAGCAAACATTCTGAGCCTTTGA
ACTACAACGACGCCGGGGAACTGGTGAGCGGTCAATTAGAGAATCTAATT
CATCTGATGACACCCACCAAAGAATACTACCCTGACAAGAAGTATATCTT
CACCTTCCTGTTGTGCTCAAGATTGTTCATGCCACCTGCAAGTCTACTCC
GCAAACTGGTCGACAACATTAAGGTAGTTGTTGAGAAAGATAAAAGCGTC
GAACAAGAAGTATTCCGCAAATTCGTTAATTTGTTGTTAGACTGGAGTAA
ACAATTCCCTTACGATTTCAAAGATNCAGACGGTCGATTTGAGATAAATC
ATGACCGATTGAAGACCTTCtctatttaatttttcttttgtgaaaCATAC
TCCAATtctttatcatttgtttttgaaatGCTTTACTGAAAGGCtctcca
aaaaataagaacaatttgaggctcaaagtgccaaaacaaataagaacagc
cgagcctcagaaaAATTTTGCTGGTCCTTAAAAAAAAGTGTNTAGAGAAG
TTTAAAGAACTGTTAGCATACGTTGAAAAAGCCAACGAATTCCCTATAAA
CATTGATGAAGAAGAGAAGAACTTCTTTGATATTTGTCAAGACCCGATTA
TGGTTGCTGAACAATTAGCTTTGATTGAACTTGAGAAAATGTCAATGTTG
AACGCTGAACAATTTGTTGAGAAGTTCATTGCTGAAGATATCACGTGCAG
TCGATTAGATTTGACTGAATCGAACAAACATTCAACCACGCTTGAACTTT
ACGTGTCGTGGTTTAACCGTTTGAGTTATTTGGTTGCTACGGAGATTTGT
ACGTGTCCGAAGAAGCGAGATCGGATACGCCTCATCAACTTCTTTATAAA
TGTTGGCAAACACTGCCTTGCCATTGGGAATTACAACTCCTTAATGGCCA
TTATTACAGGACTTAATATGAACGCTGTAGGTCGCATGTCTAAAACTTGG
CAGAAAGTCAATAAAGGACGGTTCAAGAAACTCGAATCTGAAATGCAGCC
GGAAGCGAACTTCGCGCAGTAtcggaaaattttgaaagaaagaatgGAAC
ATAGAGAGGATTTAGTGATTCCAGTTTTCTCGATTTTCGTCAAAGACATT
TATTTCTTGAACGAAGGGATCAAGGATAAACTATGTAACGGGATGGTCAA
TTACGAGAAATTCACCCTCCTCTCCAAACAAATGAACGATTTCTTATCAA
GGCGTAATAAAAGATGTTACTATCTAcgtaatgatgacgtcatcaaatat
ttcttggagACACCAGTGCTCGGTGAGAACGGCATTTATAAATCATCTTT
TGAAGTGGAAAAACCGGAGAATAATTTCGAACGTGACCGTTTCAAGTCGG
TCAGGATGAAGATGGGACAGACGGTCGATTTGAGATAAATCATGACCGAT
TGAAGACCTTCtctatttaatttttcttttgtgaaaCATACTCCAATtct
ttatcatttgtttttgaaatGCTTTACTGAAAGGCtctccaaaaaataag
aacaatttgaggctcaaagtgccaaaacaaataagaacagccgagcctca
gaaaaattttgctggtccttaaaaaaaagtgtatgtcaAATACATAATTG
CATTGCTCTTGTTAGCTTTCTCCATTGAATGTGACTCCATTCCTTGCGGT
AAATAAGCTATGAAAATTGTGTTGTTTTTCATCCTCTACATTGAGTTTTC
TTTGAAGGCTTCCAAGTCGAGAGGaaagattttatgattttattaaaagt
aagAATAAAATATATTGTGTAAAAACCTAAAAGTAATTATTTATAGAAAT
TTCATTCCCAAGTTTTTTATAATACTAATGCTGACAATTTATTCATATAT
TTGCTAAGATTTTATGTACAT Run BLAST on NCBI transcript from alignment at sc0000252:147585..151855+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016791 ID=TCONS_00016791|Name=TCONS_00016791|organism=Clytia hemisphaerica|type=transcript|length=4271bp|location=Sequence derived from alignment at sc0000252:147585..151855+ (Clytia hemisphaerica)
GAAAGACACAAAATGACAGTTTTTCGATGTCAGCGTTATTTGAAGAAAGA
GCAATCTGAGTAAATATAGAAAAAGAGGAAAAGTTGAAATAACTTTGAGG
TGGCCATTCAATCGAAGAGCTTTAAAAGGATAGTCGTGttagaaaaaaga
agacattttcAGTGACAAAATGGTTTTgagcgaaaaagtgaaaatctcaC
TCCTAAAAGATGTAAGATTTTAGTTTGAGTCAAATTAGTGTGCACAAATA
CTGTAAAGGTATTTTTAAGTCAAAGAATCGTTCGCAACTTCGAGTGACAG
AAACGAACTGACAAGCCTGTACCCTGACACTTTCATATATATTCCTCCTT
TCTCTCTACAGTTTACGATCTTTGGCACGTTACTTCGACCCAGGAAGTTG
AGAAAAGGTGTCAAGAAGAAGACACCAAAACGAGGCGACGAAAACCAATC
ATCTTCCAAACAAAAAGATGTTGACGTCAGCAAACATTCTGAGGTTAGCC
TTCTTCACATAAAAAAAACTCCCAGCGCCGTCGTGTACTACCATGGTTTC
TGCCTACTTTTTcagtccccccttaaaatgcaattttgtccttaaagaaa
actccccccttaaatcgaacaaaaattaccGGTACCCCTTGTTAGAATGT
CCccccttaaaatgaaaaaaaaagaggaaTCCCCCCTCAGATTTTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNaaattcaataaaaagaaatcattgaaaataaactggatcctat
aatcaaatgatacaaataaaactttttatgaataaaaccaaacaaaagat
GCAGTACCTTACAACAGTTGTGTTTTGTTCATATCTTAGGCCTTGTAAAT
TATCTTTATCATTAGACTTGAACTGGGAATGTTTTCTGATTGTAGTCCTA
GTTAAAGTTAGGTCGAGNtaaaaatgtcgcccaccatggttgggcgacga
agaaaatttttcactttttacaccctcaaaacagcttaaaacgttatcta
attgaggagaataatagtttttatatatatatttggTCTGTTAAAGGTCA
TTCTAATGTACATAACTTTCAATATAGCATGGTCTGCAAAATAGTGGGTA
TGAGATTGTGAGCACGAAAACGGGATAGAAGATATATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCCTTGATAAAGAATCcccc
cttatttaaaaaaaatgacaaaaatccccccttttttaaaaggcaatttt
tttgacccccccttattttaagggggggcAGAAACCATGTTACGTATTCC
AGCAATCGTTAGATAATTCCTTAAATTCGCTAAAGAGTATATGATCTCTC
CTGAGCAACTGCATAAATGTTTTTAAGAAAGCtttttttctgttattttt
aaNCTCTCCTGAGCAACTGCATAAATGTTattaagaaagattttttcctg
ttaTTTTTAGAAGCTTCTTAATAACGCTAGCAAAAATGTTacaatgaatt
ttaaattccCTCCTTGTTAGTGACAGCAAAGTATTTTGCATCCCTTGGCA
AATTtggatacacatttttttttatcagaacacctaaaatttgactgagc
ctggatgtgcttattttttttagcaattttcagtctaaaatgttcttaaa
tgcgttcttaatttttcagactactctaaatcgacgatatgatacaaaat
aaagagcacttaaatttggcaaaatttggacaatatttgactatCGACTT
Ttaaagatccacccctaaattcggttaaaactgcttaaaaagaggaaaaa
attgtgNGAGCAGTACTGattcggagggctcatatccatccctaagttcg
gttaaaactgcttgaaaagaaaaaaaaaatttgtttcttgtcattttttt
ccaaactgaggctgggcatgttcttaagatgttcttaatttttcgacgaa
ttttagcctatatgttcttataaactaggttctaaaaaaaaaaacgtgta
tattttaTGCACCAtttcatatttcatatttctctcaTTTTAGCCTTTGA
ACTACAACGACGCCGGGGAACTGGTGAGCGGTCAATTAGAGAATCTAATT
CATCTGATGACACCCACCAAAGAATACTACCCTGACAAGAAGTATATCTT
CACCTTCCTGTTGTGCTCAAGATTGTTCATGCCACCTGCAAGTCTACTCC
GCAAACTGGTCGACAACATTAAGGTAGTTGTTGAGAAAGATAAAAGCGTC
GAACAAGAAGTATTCCGCAAATTCGTTAATTTGTTGTTAGACTGGAGTAA
ACAATTCCCTTACGATTTCAAAGATNCAGACGGTCGATTTGAGATAAATC
ATGACCGATTGAAGACCTTCtctatttaatttttcttttgtgaaaCATAC
TCCAATtctttatcatttgtttttgaaatGCTTTACTGAAAGGCtctcca
aaaaataagaacaatttgaggctcaaagtgccaaaacaaataagaacagc
cgagcctcagaaaAATTTTGCTGGTCCTTAAAAAAAAGTGTNTAGAGAAG
TTTAAAGAACTGTTAGCATACGTTGAAAAAGCCAACGAATTCCCTATAAA
CATTGATGAAGAAGAGAAGAACTTCTTTGATATTTGTCAAGACCCGATTA
TGGTTGCTGAACAATTAGCTTTGATTGAACTTGAGAAAATGTCAATGTTG
AACGCTGAACAATTTGTTGAGAAGTTCATTGCTGAAGATATCACGTGCAG
TCGATTAGATTTGACTGAATCGAACAAACATTCAACCACGCTTGAACTTT
ACGTGTCGTGGTTTAACCGTTTGAGTTATTTGGTTGCTACGGAGATTTGT
ACGTGTCCGAAGAAGCGAGATCGGATACGCCTCATCAACTTCTTTATAAA
TGTTGGCAAACACTGCCTTGCCATTGGGAATTACAACTCCTTAATGGCCA
TTATTACAGGACTTAATATGAACGCTGTAGGTCGCATGTCTAAAACTTGG
CAGAAAGTCAATAAAGGACGGTTCAAGAAACTCGAATCTGAAATGCAGCC
GGAAGCGAACTTCGCGCAGTAtcggaaaattttgaaagaaagaatgGAAC
ATAGAGAGGATTTAGTGATTCCAGTTTTCTCGATTTTCGTCAAAGACATT
TATTTCTTGAACGAAGGGATCAAGGATAAACTATGTAACGGGATGGTCAA
TTACGAGAAATTCACCCTCCTCTCCAAACAAATGAACGATTTCTTATCAA
GGCGTAATAAAAGATGTTACTATCTAcgtaatgatgacgtcatcaaatat
ttcttggagACACCAGTGCTCGGTGAGAACGGCATTTATAAATCATCTTT
TGAAGTGGAAAAACCGGAGAATAATTTCGAACGTGACCGTTTCAAGTCGG
TCAGGATGAAGATGGGACAGACGGTCGATTTGAGATAAATCATGACCGAT
TGAAGACCTTCtctatttaatttttcttttgtgaaaCATACTCCAATtct
ttatcatttgtttttgaaatGCTTTACTGAAAGGCtctccaaaaaataag
aacaatttgaggctcaaagtgccaaaacaaataagaacagccgagcctca
gaaaaattttgctggtccttaaaaaaaagtgtatgtcaAATACATAATTG
CATTGCTCTTGTTAGCTTTCTCCATTGAATGTGACTCCATTCCTTGCGGT
AAATAAGCTATGAAAATTGTGTTGTTTTTCATCCTCTACATTGAGTTTTC
TTTGAAGGCTTCCAAGTCGAGAGGaaagattttatgattttattaaaagt
aagAATAAAATATATTGTGTAAAAACCTAAAAGTAATTATTTATAGAAAT
TTCATTCCCAAGTTTTTTATAATACTAATGCTGACAATTTATTCATATAT
TTGCTAAGATTTTATGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016791-exon-sc0000252-1491911889:147585..147795 | TCONS_00016791-exon-sc0000252-1491911889:147585..147795 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1510915933:147585..147795 | TCONS_00016791-exon-sc0000252-1510915933:147585..147795 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1575043694:147585..147795 | TCONS_00016791-exon-sc0000252-1575043694:147585..147795 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1491911889:147946..148077 | TCONS_00016791-exon-sc0000252-1491911889:147946..148077 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1510915933:147946..148077 | TCONS_00016791-exon-sc0000252-1510915933:147946..148077 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1575043694:147946..148077 | TCONS_00016791-exon-sc0000252-1575043694:147946..148077 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1491911889:149978..151855 | TCONS_00016791-exon-sc0000252-1491911889:149978..151855 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1510915933:149978..151855 | TCONS_00016791-exon-sc0000252-1510915933:149978..151855 | Clytia hemisphaerica | exon |
| TCONS_00016791-exon-sc0000252-1575043694:149978..151855 | TCONS_00016791-exon-sc0000252-1575043694:149978..151855 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:147585..151855 + |
Blast
BLAST of TCONS_00016791 vs. Swiss-Prot (Human)
Match: RGF1C (Ras-GEF domain-containing family member 1C OS=Homo sapiens GN=RASGEF1C PE=2 SV=2) HSP 1 Score: 290.812 bits (743), Expect = 4.823e-89 Identity = 179/482 (37.14%), Postives = 264/482 (54.77%), Query Frame = 2
Query: 338 SEPLNYNDAGELV------SGQLENLIHLMTPTKEYYPDKKYIFTFLLCSRLFMPPASLLRKLVDNIKVVVEKDKSV-EQEVFRKF----VNLLLDWSKQFPYDFKDXDGRFEINHDRLKTFSI*FFFC-ETYSNSLSFVFEMLY*KALQKIRTI*GSKCQNK*EQPSXXXXXXXXXXXXXXXXXXXXAYVEKANEFPINIDEEEKNFFDICQDPIMVAEQLALIELEKMSMLNAEQFVEKFIAEDITCSRLDLTESNKHSTTLELYVSWFNRLSYLVATEICTCPKKRDRIRLINFFINVGKHCLAIGNYNSLMAIITGLNMNAVGRMSKTWQKVNKGRFKKLESEMQPEANFAQYRKILKERMEH-------REDLVIPVFSIFVKDIYFLNEGIKDKLCNGMVNYEKFTLLSKQMNDFLSRRNKRCYYLRNDDVIKYFLETPVLGENGIYKSSFEVEKPENNFERDRFKSVRMK-MGQT 1723
+EP + AG+ + S LE LI + PT +YYP+K YIFTFLL SRLF+ P LL ++ + DK V ++ RKF + LL +W++ FP DF++ I H LK C E Y + + + L+ K L +R G + ++P ++Y K P +I E +C DP +A+QL +ELE++ + E+FV+ F+ +D S S+K ++ LE YV WFNRL YLVATEIC KK+ R ++I FFI+V + C IGN+NSLMAII+G+NM+ V R+ KTW KV +F LE +M P NF YR L+ RE +VIP FS+ +KDIYFLNEG ++L NG VN+EKF L+KQ+ +F++ + C + ++ + Y P+ E+G+Y +S+E E PEN E++R+K++R +G+T
Sbjct: 21 TEPTDGEQAGQPLLDGAPSSASLETLIQHLVPTADYYPEKAYIFTFLLSSRLFIEPRELLARVCHLCIEQQQLDKPVLDKARVRKFGPKLLQLLAEWTETFPRDFQEES---TIGH--LKDVVGRIAPCDEAYRKRMHQLLQALHQK-LAALRQ--GPEGLVGADKP--------------------ISYRTKP---PASIHRE---LLGVCSDPYTLAQQLTHVELERLRHIGPEEFVQAFVNKDPLASTKPCF-SDK-TSNLEAYVKWFNRLCYLVATEICMPAKKKQRAQVIEFFIDVARECFNIGNFNSLMAIISGMNMSPVSRLKKTWAKVRTAKFFILEHQMDPTGNFCNYRTALRGAAHRSLTAHSSREKIVIPFFSLLIKDIYFLNEGCANRLPNGHVNFEKFLELAKQVGEFITWKQVECPFEQDASITHYLYTAPIFSEDGLYLASYESESPENQTEKERWKALRSSILGKT 466
The following BLAST results are available for this feature:
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