TCONS_00016795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016795
Unique NameTCONS_00016795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016795 ID=TCONS_00016795|Name=TCONS_00016795|organism=Clytia hemisphaerica|type=transcript|length=1952bp
AGCAAATAAGAGAAATTTGAGTATTTGAGTTTAGTTGTTTTGTCGTTACC
aagtttgaatatttttaagttttgaattCAATGGACAGTAATAATAGTAG
TTTTGATTCATCGGATGGTTCGTCATTTTTATCTGATATCTTGGAATCTG
AATCTGAATCCACTATTGAAGAATTAAGAAAAGAAACGGAAGAATTGGAA
AGGAAATTCTCATCAGTTGTACCTGTGCTGGTAACAGAAGGGAAGGAGAA
TTTATATGCTGACCGAGTTGTGAAGATGTCTTCTGATGATGAACATGACA
GTGATAAAATGGTGATCATGGAGGAGAAAGGAGAAGCTAAACACACCAAG
GATGATTGTGGTATAGAAGAACAAATAAGTGCATCAACTCTAAAGGAACG
ATTTGAGAACAAAGCCATCGAAAGCAAAAATAGAGTCATGACGTCATCGA
ACCGTCTTCAAGGATTGTCCAATCAAAATGGGGAAGGAGAAGAACGCCAT
TCCGCCCTTTCGCTGAAGGCGCGATTTGAAGCGAAGGCCCAAGACAGTGC
GCCAGTCAAGCGAAACTTCGTGATCAACCGTAGCGGTGGTGGCGCAGCCA
AAAAGTTCGGTGGCGGTGGTGCCACATCCAATAAATGTTTTGTCTGCAAC
AAGACGGTGTACCCAATGGAAAAATTAGAAGCCGATAAACATATGTACCA
CAAGTTCTGTTTCAAATGCAAAACATGTAATCGAACTGTCGGTCTTGGAA
ACTATGCAGCCTTACAAGGAGAAATTTACTGCAAACCACATCTCAAGCAA
CTATTCAAACTGAAAGgAAATTACGATGAAGGTTTCGGACGCGAGCAACG
AAAAGCAGACTGGATGAACAAAGATGATAAGAACGTGGAAACGATGAACA
ACGAAGTGAACGGAACCGCAGGCGATGCAGACGAAGAAGCTCCACTAAAC
GATGATTAAATATCGATGTAAAAAGGGCTGAATGTGGGAGAGGGGTGAAA
ACGTTTATGATTTTATGATGAACAAAAATGACAAGATATGATGACTTTTT
TATATACTTTAAGTAATTTATAGACAACTGCGAATGACCAGGATGTTTGT
TCTTAAACCCTTATTTTATGAAATTGGGTTGGTAGTTCAATAGCAAATTT
GGTTGTGATCCTGAGTTTAGTTTGTACTTGAACTATACATTGAACTTGCT
CTTGAACTATAATTTATTTCATACAATTTCAATAatttcacgcagcatat
tgtAATTATAATCGAATTCTTTTTTAGttggttttatttttctttctcgt
TCTTTATTTGCAAAATCTgaagttttttatgatttcttttaGCCTTCTGC
CTACCTCTATatcattcgaatgttttctcatCAAANTCTTTATTTGCAAA
CTCTgaagttttttatgatttcttttaGCCTTCTGCCTACCTCTATatca
ttcgaatgttttctcatcaaaattctttaagaagttttttctttctatGT
TTCTTCTTTCATCGATGGACCTCCTTAATTTATTTTGAGTGTTGGGCACT
TTATTTGATCATAATTGACTGATTTAATAAATatattataattataattt
gGGTATATTTAAATAGAgaaattcttaaattttgtgattttgaaatattt
taacttttgttgattttaaCCTGAGAAATTTTGTGTTCTTTGAAATTTAT
GtccttttatgattttttgaactCTTTTTATATAAATAGATATGTTTAAT
GATTCAATTGAATTTACATCTCCAGTAAATAATTAGATGTCCAGGCGTAG
ACAAGGTATCCAAAACAGCGAGAGAGAATAGGattcatcgtcagcttgtc
aaaactccaactaatatttccaaattttgactcaaaagtatggaataatA
ATTTCAGAGAGTATGGaattcaaattatgatattcttataacaCAGACTC
CC
Run BLAST on NCBI

transcript from alignment at sc0000252:280410..293457+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016795 ID=TCONS_00016795|Name=TCONS_00016795|organism=Clytia hemisphaerica|type=transcript|length=13048bp|location=Sequence derived from alignment at sc0000252:280410..293457+ (Clytia hemisphaerica)
AGCAAATAAGAGAAATTTGAGTATTTGAGTTTAGTTGTTTTGTCGTTACC
aagtttgaatatttttaagttttgaattCAATGGACAGTAATAATAGTAG
TTTTGATTCATCGGATGGTTCGTCATTTTTATCTGATATCTTGGAATCTG
AATCTGAATCCACTATTGAAGAATTAAGAAAAGAAACGGAAGAATTGGAA
AGGAAATTCTCATCAGTTGTACCTGTGCTGGTAACAGAAGGGAAGGAGAA
TTTATATGCTGACCGAGTTGTGAAGATGTCTTCTGATGATGAACATGACA
GTGATAAAATGGTGATCATGGAGGAGAAAGGAGAAGCTAAACACACCAAG
GATGATTGTGGTATAGAAGAACAAATAAGTAGGCGCTCACACACTGGTTT
CTGTACATCAGTAAAAAGGGAAAGGATTACGGAAACTGAATTGTTTTAGG
CCAGGGGAAGCCTGCAACAAAGTGATTCTACCAAAAGAAGCTTTATTTGa
acaaaataacatttttaatgagcaaGTGAAATATTTGAAGTCTTCTGAAG
ACTGCTCGCtcacaaaatttttgatttaacGTTACTACTAAATACTTTCT
TCAGGTGCATCAACTCTAAAGGAACGATTTGAGAACAAAGCCATCGAAAG
CAAAAATAGAGTCATGACGTCATCGAACCGTCTTCAAGGATTGTCCAATC
AAAATGGGGAAGGAGAAGAACGCCATTCCGCCCTTTCGCTGAAGGCGCGA
TTTGAAGCGAAGGCCCAAGACAGTGCGCCAGTCAAGCGAAACTTCGTGGT
AAGTGATTAAAGTTTAAGGATTCTTAATTGTTTTGAAACACAAAGCAGTT
TACGTGATGAAATcacttttgttaatattttatcTCGAATTTAATTGCAT
GTATACCCCCATTTAGACAACTGAACCATCAGCTGCACAGCACTTGAATT
TTGTCTTTAAATTACTACCAAAAGATTGCAACTGAAAAACCTATTATCAA
ACCTCACCAAAccgaattttttcttttcactgCATTTGAcggccattttg
ttttccaTGTGTAATTTCTCTCTGACAAGTGTACACATCTCCTTCTTCGT
TGTTGTGTGTTTAAGTTGTCTTGGCAGATTCACTGATagtttatttaaat
attttgcaaaCAAACATCTCGTTGATCGATCTTTTCAATCTTTTCCTATC
CTTGATATGTTTTTCCGAAAACACCACTCGCTATTTAAAGAGTTTTCctt
ctaaaaattattttcaaggtTTGCTTGAGGGTTGAGGTCATGGACATGAT
GTATAAGCTTTCGTTGGTTTTGGTTGTCTGTTTTGGTTTTTTCTGATAGT
TTCTACGTTTACGTTTCAAACTCTAACTTTATTTGCTTTGTGTAATAATT
TGTGTAATAATTTATGCACTTCTGTATCAAATCTAgttgaatacacgctt
tttggacttacctccgggtgccccggtggaggtcctataaattaacccat
gtccgttcgtccgtccgtctgttaccagcttttctcaggattggctcatt
atttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatccactgtaaatcagcttt
ctaatgtacttgaataaaaattcattggctttcaaaatctgctccccacc
agagttcatgatttttaggggtcaatttccGCTTAgaagcctatctttga
gacgctgtatcttcaaaactacttgagatatcaaggtgaaattttcaggg
tcttattttcttgtgtgatggaccatttggttaaaatttcatcaaaatcc
aagaggatgaggtatcacaccctgaagactcttaaaaaaaatggctctta
accaaataagaaaatatagcttttaacaatgttgactcattatttttttc
tgattttttgcacaatgatgcaaaatggcaatacctaaaatgtgtcggag
cccaattttcgaaaaagaatatattttggcaaatttgggccaaaaactgc
ctaaaaatagggttttttggactttgtgcaaaatcctgtcattacttttt
tctgattttttgtacaaagatNcagggcaagattctctaaagaatggcNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcggaaaattctttt
tcgccttaaaagacggattttcgtattttggggaaattccctttaaccaa
ataagaaaatatagcttttctcaaagttgactcatcatttttttctgatt
tttggcacaatgatgcaaaatggcaatgcctaaaatgtgacggagccaga
ttttcgaaaaaaaatatatttgggcaaatttgggccaaaaacagcttaaa
gggttttttgggcctgaatggtttaagtgattttcgtatttggggaaatt
cctttttaccattttacattattcaacacacaagctttatttttcNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagcatgttgcttgt
tttttataagaatggtgtaaatccatttcaccatggatattcttaacttt
tttgggaaaatcatcctaaaatattctcacagcattcttattacttgggg
gtaattggcaatttataatttagaatgctctaaaaatgatattctttgct
tgaatagcaaaattccatgatggtgatattcttaggatattcttaatttt
ttggccattttcatcatggacattcttataaagtgtattcttataaaaaa
aaaagcgtgtagacgatatcggctttccgaattctccccgaatgattacc
cacgatgcattgcgcaaaaaaattcacggacgatattgactttccgtgaa
ttttttgcgcaatgcatcatgggtaatcattcggggagaattcggaaagc
cgatatcgtctattggcgTCGATTTTTATGTTGAAGAACGTTGTCTAACT
TAAGTAAAGAACTGCTTATTTAAATGTCAAAACCTCATTGAATCACGCCT
CCGATTAAATGTCGTTTAGCTGGCCTTTCAGAGCACAATATATCTACCCA
AAAATAGGTGCGTTTCTACTGTAAAGCCGTCAAAAAAGTACCAAATTTGT
CATTAACAAAACTACGGGAATGGGCAGGGGGGTACTAAGTGCATTTGACT
ATCGACAGATTGACACCACCCCTTATCACACTTAGTACCCCAAAGTACAA
AGTGTATTTGACTACTAGTAGGTTGAGACCACCCCTATTTGCACCTAGTA
CCCCCAGTACTAAGTGCATTTGACTATTGGCAGGTTGACACCACCCCCTA
TTCTGCCTTATATAGTGGTCTTGAGTAACCGACACTCAAGGTAATCACTA
TTTGAAACATGCTAGCACCCTATGTAGCCCTGGGGTTGACATTATACTAG
CGTTGGTAATTTTTCTCTATTTGATTTATAATAAATGCAAAGCCAAGCAT
ATATGGTACAAAGCTATTATGCCTAACATATAAAACTTCCCAACATATTA
TTAGATCTAAAGCCCCGGAAATGAAAAACATCACTTTTGCATTGTTTGAC
AAGCGACTGGATGCAAGGGGAttaagaagacattgcaatgctGCTTAACT
TAACTTTAAAGTTAGCTGAGGAGCATAACATAATGTAAATCATAATGACG
TAATTTAGTAGCTGCacacaatttcaaaacaaacaatcttTTACATCGCA
ATTAAGATTCGAGCTAATTTGGTAAGTCTGGAGAGTAAGACAAATTAAGC
TCCTGCATTGAAAAAGGCTTATTGATTTGGATAAGACCAGCTTTTTTACA
GTTAGTACCCAAAAAGTACcatttgattgatttgaattttaaagcACGTA
CCACCCCTCatagcagttagtaccctaaaagTAGAATCTGGTTGAGTTAA
GATTTATAGTACACCACCTCTTACAACAGTTAGTACCCACAAGGTACTAA
CTGCAAATTCCAAAGATCAAATAtgacccaccacggtactaaccgtcATG
ATGTCTGGTaccaactgcatgaccccctTCCCCCTGGAatgggtgttttg
aggaaaatatattttccagcTACACTTGAGTATTTATTATTACTTCAGTA
TTATTTTCTGTTTGGGGAGTCCtagttatttttttacaatatttagACTG
AAACGTTATCAGTTCTTTCTTAATTGTCTTTCCAAACCTCTGACAACGTA
AATCCACTGTTTTCAAGCCAGGTTGCATCAAAAAGATCCAGAGCGACATT
TCAACTGTATCGCATATCTTAATATTTTAATCCTCCTTGTTTCTTTTCCG
CAAACTGTGTATTCTACAtcaattcttataaaattcgtATTGTTTCATAC
GTTGTTTTTGTTCCATGATTTTACCACTCTTGCTACTAGTTCTCTCGCCG
CCTTCAGACCTTGTTACAGACACTTTTCGAGCTGAAAACGGTCGCTAGTG
GAAACAAGGGCAGATTAAGTCTCATAACATGGAAAACTCGGTGAGTAAAT
GAAATCCTATTGTTTTCTTTAGATATTTGTTGACGagttttgtttctaaa
tttaTGATAGCGATATCCAACTATTTTAAATCTAGTCAAGTGGAGAGATG
GCTTCTGTGTAAATAATCACTTGAGGtcaaatttttcccatttttgaCCC
ATACTTCACTTGTTTGGTCTACTCATCTGCTTTTTGTAAAAATGGGGAAG
GAGCGCGATGCATTCGAAATTAGATCGTTGGAAAACAACAGACATTTTGA
ACCGAGCAAATAGGGAAAACTTTTATGGTTGATTTAAGTATGCTTGTATA
TGCCTAAAATTGGAGTACACTTTCCTCATAGATTCAAAGTTTTCCGTACG
TTGTACTGTTAAACTTTCAGAATTTGATAatcgtttttttattttgtata
acTTTGTAAAATGTGAGTGAAAATCATCATATATATTTTGAATTAGTTCA
ATTAGCGTCTCAGTGTGGTTTCTCtcgaaaaatagagaaaaatttcTTGA
CCTCTTACTTGTTAAATGTATAAATGTCTTCAAGAGAACTCGCTGttttt
ggaagtcttttttcCGTTTTCCATCGCCTTTTTCTTCTCGGGGTATGTTC
TGACTGCGTGTTTTCACTTTGTCTACTAAATCTCGGTTATTGGGTTGCTG
CTTTTTTCTGGAATTAGTTGTTTTTTTCGCTCTTTGAGAAAGTGTTTTTA
ATCGTCTCTAATCCCCAAATGCTTTGATGTTTGATGTTTCCTTGGCGTTT
TAAAGCTGCTTGCAAGAGCGTGTAATGGggtatctttttatttttaatta
aaaagtgaaatagaTACAATTAAAGACACTATCCATCGTATTACGGTTAC
ACAATATTATGAATTATGATATAAGTCAATATTTACCATCCAATATACGG
ATTCTTTAAAATCTTGGTTGGTTATTATGATATAATATCAAGATACGATC
ACTTTACGGGATCATTGTTCGTTGATTTTTGTGGTAGATCGTTGATACGC
AAAACGCAAAACTTGTGAGTGTTGAAACTGTTTCCATCCTTAAATGTGTC
TTTATCGAAAGGGAAATGGTCTGTCAATAAGTCTGAAAACAGAAGGAAAA
CTGGTTCCAGTAAATCCTCGTTTGATTACTATATGAATGTTTATGCTTGT
ATGTGTATAATAAACTGTTGCTCCAACGAAGGGAAGTACTATATCGACTA
AAAACGTTTTTTACTGCCAGTTGAAAGCAACAAGTCTATTTTACAGAATG
TTACTTACACGATTACTAAGGTTGTGACCAAGGGAGGTCACAGACAAAAC
TTCAAGTCTCTCTTGACTAAAATTTTCCCGGTTTCGGAGTCGGATTTCCC
TTACAGGGTGTGTGAAAATATNtcaaaattatcaaaattttcccGGTTTC
GGAGTCGGATTTCCCTTACAGGGTGTGTCAAAATATCATTGGGTATAGGT
ATTAGCATGACTTTGTATCAAAATACTGGTTGAAAGACCTTTTTCTCTAT
TATTTGATGCTGTATCTTTTTGTGAATAAATGAATTGGTTTTTTGAAAGG
TTTCATTAATCAAATAGAATATAAGATGAAGAGATAACCCTATTCACGTC
TTTTCTATCAATTCATAACCATCATTCATCTCTTATCAGGTGCCCTAAtg
tgcaaaaagaaaaaaaggaagaaatagTTTTTGTACTCTATAGCGTGTTC
TTTTTCCTcgtgaaataaaaacattgggGAAAATAAAACTTCTCTTTTGA
TGTATGTACAGCTTCTTCTTTCATTTCAACCTCGTAAACGTTTagaattt
ttggttttgaatattttctgtGTATAATTTCTGGTTTGACTTTGGATTTG
ACCGATGACGAAAATTGGAGTATTTATATtgtgtttatatatttttgatc
AGTAGAGTGGTTTACAGGGGCAGTATTCACATTTACTATCGTTCTTCCTT
GTTAGTTTTTAGCCTATTTCATCAAATATGAAAACTTTATATGGTTGAGC
ACTCTTTTTCGAATTGAGATTTAAGTTTGAATTCCCAAGTTAATTGTCAA
CTTCCCTTCTTTAAGGGAAATCTGTACATGTTTGTGCATTTTCCCCTGTA
AATTGAACggaaaatacacgcttttttataagaatggtgtaaaacCATTT
CATTATGGATGTTCTTCACTTTttaggaaaatcatcctaattcaaggatc
ctaattcagactagatttaacatttaatacATATGTCTCAAACATAAAAt
ggaatttttgtgaaaggagtgagccttacttgggggtaattgacaaatTA
TAAtagaaaatgctctaaaaatggcattcttagcttgagtagcaaaaatc
cataatggtgatattcttagcattattcttaattttttggccattttcat
tatggacattcttataaagtgtattcttataaaaaaaagcgtgtagcgtG
TAACAGATGCACGAATGCTACGAAGTTGGTTAATGTCCTAAGGTTAACAA
AATCCAAATCAGCTACAAATATACACTTCTTTTGACAGTCAAACATActc
ataaacaaataaaaaattaataaacgggtcCGGAAATATTTTCTAATCAT
GTCGGTGAGCGAAAGGATATCCAAACTCAACATCAGTTCCAACAACACGA
ACGAGCCTCTAAAGGTATTTGCTTACACCGGCTCTTGAGATATACTTTCT
TTGTCAGCATTCTCAAAAACAGATAACacacacagatatctgtaaagccc
gaagggctagatttgcggcttttatcaaaaagtgaagctcatctttggaa
ggatttcctaccagagtcatgtgactaaaatatgcaatttcaccggtttg
agagatgtgaaatagcgtttgtcgcctacgttttttgatctcgcgctccg
aaaacaattaaaatgctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcggcacgaaa
tttaaaaagtcaaatttttgcttcacttttttttgctggagaaagcttaa
agttgcaaatctagcccttcgggcttagatatctgtgatAACACACCTTT
AGGTAGAGACTCGAGTAATGAGATATCTTGATTGATGACTTTTGTACACT
CTAAACCTATAAAAATGAACGATAAGGATCGTAGAAAGAAATTTGACCCA
TCATTGGATTGCAGCTGCTAGTGTAATTTCTTTCCACCCAAGTATTTAAT
ttctaaaattgaattttctgTTGAGATTTGTTTTCACTCAATGAATCTTT
TAAGCGTTAAATCATTTGTCTTCTTTTTCCAGATCAACCGTAGCGGTGGT
GGCGCAGCCAAAAAGTTCGGTGGCGGTGGTGCCACATCCAATAAATGTTT
TGTCTGCAACAAGACGGTGTACCCAATGGAAAAATTAGAAGCCGATAAAC
ATATGTACCACAAGTTCTGTTTCAAATGCAAAACATGTAATCGAACTGTC
GGGTAGGTAAGCTCTTCGTACATCGTCGGGCTCGAAAAGCTTATTCTTAT
CGCATCTCGACTTATTACTATCAATACTACAGCCCTACTGTATAATGAGT
CTTTGCTGGTTTTCACGATTTCTTCATGTGGGAGTAAGTTTGTTTGCTGA
GAAAATTGTCAATAAGATTGGTTAGTGAATGTCTTTTTGGTATCTTTCTG
TAGACATTTCTTATTTGTTGCATGATGATTCAGATTACATTGACATTATG
AAAATTCCGAAAGTTTCACTTTTGAACCTTTATAGTCTTGGAAACTATGC
AGCCTTACAAGGAGAAATTTACTGCAAACCACATCTCAAGCAACTATTCA
AACTGAAAGGTTTGTTCTTAATTCAAAATGTTATTGACAGCATACAgtac
aaaatgtttttgaaatagacgatatcggctttcgataaatgcaatgcatt
ctggtttctagggactctcaaaggaattataatctattataattgatcta
ttataattcctttgagagtcccgagaaaccagaatgcattgcatttatcg
aaagccgatatcgtctattaccaCATCACCGTAGTTACCAAACGGCTGAA
AAACGAAGTCGTTAGATCTAATAGTAGCAAAACAACTGCCTCATTCCAGG
AGCTTCGTGATTACTCTCAATAACTGTTCTTTATCATAGTAAACTTTTTA
ACGGAAGAATTTTAAGTCAGGCGGCGCTCATGTTGCCTTCAATGAATTTA
TCAAAGGATGATCGGCATACATTCCAAACCTCATGTTTCAAATGTTACAG
CTGAAAAGCAGACAGACTTGGTTtgagtttgaatttgaattttaacGCGA
TGACAGTTCCATGTTTGATTGGCAGTGAAAATTCAAACTTCTAGCTATTT
CTAGCTTCAATTCGCGTTACTTTGATTTTGAAGTTGAATCTTTGAATCAA
TGCTGAAACCCAAATTACTTTTTTCAGTTATTGAAACttcatgacttttt
ttttgcttgtaggAAATTACGATGAAGGTTTCGGACGCGAGCAACGAAAA
GCAGACTGGATGAACAAAGATGATAAGAACGTGGAAACGATGAACAACGA
AGTGAACGGAACCGCAGGCGATGCAGACGAAGAAGCTCCACTAAACGATG
ATTAAATATCGATGTAAAAAGGGCTGAATGTGGGAGAGGGGTGAAAACGT
TTATGATTTTATGATGAACAAAAATGACAAGATATGATGACTTTTTTATA
TACTTTAAGTAATTTATAGACAACTGCGAATGACCAGGATGTTTGTTCTT
AAACCCTTATTTTATGAAATTGGGTTGGTAGTTCAATAGCAAATTTGGTT
GTGATCCTGAGTTTAGTTTGTACTTGAACTATACATTGAACTTGCTCTTG
AACTATAATTTATTTCATACAATTTCAATAatttcacgcagcatattgtA
ATTATAATCGAATTCTTTTTTAGttggttttatttttctttctcgtTCTT
TATTTGCAAAATCTgaagttttttatgatttcttttaGCCTTCTGCCTAC
CTCTATatcattcgaatgttttctcatCAAANTCTTTATTTGCAAACTCT
gaagttttttatgatttcttttaGCCTTCTGCCTACCTCTATatcattcg
aatgttttctcatcaaaattctttaagaagttttttctttctatGTTTCT
TCTTTCATCGATGGACCTCCTTAATTTATTTTGAGTGTTGGGCACTTTAT
TTGATCATAATTGACTGATTTAATAAATatattataattataatttgGGT
ATATTTAAATAGAgaaattcttaaattttgtgattttgaaatattttaac
ttttgttgattttaaCCTGAGAAATTTTGTGTTCTTTGAAATTTATGtcc
ttttatgattttttgaactCTTTTTATATAAATAGATATGTTTAATGATT
CAATTGAATTTACATCTCCAGTAAATAATTAGATGTCCAGGCGTAGACAA
GGTATCCAAAACAGCGAGAGAGAATAGGattcatcgtcagcttgtcaaaa
ctccaactaatatttccaaattttgactcaaaagtatggaataatAATTT
CAGAGAGTATGGaattcaaattatgatattcttataacaCAGACTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009403XLOC_009403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016795-exon-sc0000252-1491911889:280410..280787TCONS_00016795-exon-sc0000252-1491911889:280410..280787Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1510915933:280410..280787TCONS_00016795-exon-sc0000252-1510915933:280410..280787Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1575043694:280410..280787TCONS_00016795-exon-sc0000252-1575043694:280410..280787Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1491911889:281014..281207TCONS_00016795-exon-sc0000252-1491911889:281014..281207Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1510915933:281014..281207TCONS_00016795-exon-sc0000252-1510915933:281014..281207Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1575043694:281014..281207TCONS_00016795-exon-sc0000252-1575043694:281014..281207Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1491911889:291142..291311TCONS_00016795-exon-sc0000252-1491911889:291142..291311Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1510915933:291142..291311TCONS_00016795-exon-sc0000252-1510915933:291142..291311Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1575043694:291142..291311TCONS_00016795-exon-sc0000252-1575043694:291142..291311Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1491911889:291595..291668TCONS_00016795-exon-sc0000252-1491911889:291595..291668Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1510915933:291595..291668TCONS_00016795-exon-sc0000252-1510915933:291595..291668Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1575043694:291595..291668TCONS_00016795-exon-sc0000252-1575043694:291595..291668Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1491911889:292322..293457TCONS_00016795-exon-sc0000252-1491911889:292322..293457Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1510915933:292322..293457TCONS_00016795-exon-sc0000252-1510915933:292322..293457Clytia hemisphaericaexon
TCONS_00016795-exon-sc0000252-1575043694:292322..293457TCONS_00016795-exon-sc0000252-1575043694:292322..293457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:280410..293457 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.418708	0.596981	1.82085	1.04822	10.5415	4.68247	8.39996	7.52725	5.80701	5.96554	5.45091	5.12205	7.86274	5.69607	4.37046	2.69098	9.17389	14.0486	6.82316	8.25467	21.7787	19.2755	8.25932	8.54825	12.7559	14.5292	29.1346	27.7005	76.7383	86.7151
Blast
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BLAST of TCONS_00016795 vs. Swiss-Prot (Human)
Match: LIMD2 (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.087e-30
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:  636 CFVCNKTVYPMEKLEADKHMYHKFCFKCKTCNRTVGLGNYAALQGEIYCKPHLKQLFKLKGNYDEGFGREQRKADWMNKD 875
            C  C KTVYPME+L ADK ++H  CF CK C+  + LG+YAAL GE YCKPH +QLFK KGNYDEGFGR+Q K  W +K+
Sbjct:   40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKE 119
The following BLAST results are available for this feature:
BLAST of TCONS_00016795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIMD24.087e-3062.50LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
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