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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016796 ID=TCONS_00016796|Name=TCONS_00016796|organism=Clytia hemisphaerica|type=transcript|length=1452bp
CTAATCATGTCGGTGAGCGAAAGGATATCCAAACTCAACATCAGTTCCAA
CAACACGAACGAGCCTCTAAAGATCAACCGTAGCGGTGGTGGCGCAGCCA
AAAAGTTCGGTGGCGGTGGTGCCACATCCAATAAATGTTTTGTCTGCAAC
AAGACGGTGTACCCAATGGAAAAATTAGAAGCCGATAAACATATGTACCA
CAAGTTCTGTTTCAAATGCAAAACATGTAATCGAACTGTCGGTCTTGGAA
ACTATGCAGCCTTACAAGGAGAAATTTACTGCAAACCACATCTCAAGCAA
CTATTCAAACTGAAAGgAAATTACGATGAAGGTTTCGGACGCGAGCAACG
AAAAGCAGACTGGATGAACAAAGATGATAAGAACGTGGAAACGATGAACA
ACGAAGTGAACGGAACCGCAGGCGATGCAGACGAAGAAGCTCCACTAAAC
GATGATTAAATATCGATGTAAAAAGGGCTGAATGTGGGAGAGGGGTGAAA
ACGTTTATGATTTTATGATGAACAAAAATGACAAGATATGATGACTTTTT
TATATACTTTAAGTAATTTATAGACAACTGCGAATGACCAGGATGTTTGT
TCTTAAACCCTTATTTTATGAAATTGGGTTGGTAGTTCAATAGCAAATTT
GGTTGTGATCCTGAGTTTAGTTTGTACTTGAACTATACATTGAACTTGCT
CTTGAACTATAATTTATTTCATACAATTTCAATAatttcacgcagcatat
tgtAATTATAATCGAATTCTTTTTTAGttggttttatttttctttctcgt
TCTTTATTTGCAAAATCTgaagttttttatgatttcttttaGCCTTCTGC
CTACCTCTATatcattcgaatgttttctcatCAAANTCTTTATTTGCAAA
CTCTgaagttttttatgatttcttttaGCCTTCTGCCTACCTCTATatca
ttcgaatgttttctcatcaaaattctttaagaagttttttctttctatGT
TTCTTCTTTCATCGATGGACCTCCTTAATTTATTTTGAGTGTTGGGCACT
TTATTTGATCATAATTGACTGATTTAATAAATatattataattataattt
gGGTATATTTAAATAGAgaaattcttaaattttgtgattttgaaatattt
taacttttgttgattttaaCCTGAGAAATTTTGTGTTCTTTGAAATTTAT
GtccttttatgattttttgaactCTTTTTATATAAATAGATATGTTTAAT
GATTCAATTGAATTTACATCTCCAGTAAATAATTAGATGTCCAGGCGTAG
ACAAGGTATCCAAAACAGCGAGAGAGAATAGGattcatcgtcagcttgtc
aaaactccaactaatatttccaaattttgactcaaaagtatggaataatA
ATTTCAGAGAGTATGGaattcaaattatgatattcttataacaCAGACTC
CC Run BLAST on NCBI transcript from alignment at sc0000252:290302..293457+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016796 ID=TCONS_00016796|Name=TCONS_00016796|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at sc0000252:290302..293457+ (Clytia hemisphaerica)
CTAATCATGTCGGTGAGCGAAAGGATATCCAAACTCAACATCAGTTCCAA
CAACACGAACGAGCCTCTAAAGGTATTTGCTTACACCGGCTCTTGAGATA
TACTTTCTTTGTCAGCATTCTCAAAAACAGATAACacacacagatatctg
taaagcccgaagggctagatttgcggcttttatcaaaaagtgaagctcat
ctttggaaggatttcctaccagagtcatgtgactaaaatatgcaatttca
ccggtttgagagatgtgaaatagcgtttgtcgcctacgttttttgatctc
gcgctccgaaaacaattaaaatgctNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcg
gcacgaaatttaaaaagtcaaatttttgcttcacttttttttgctggaga
aagcttaaagttgcaaatctagcccttcgggcttagatatctgtgatAAC
ACACCTTTAGGTAGAGACTCGAGTAATGAGATATCTTGATTGATGACTTT
TGTACACTCTAAACCTATAAAAATGAACGATAAGGATCGTAGAAAGAAAT
TTGACCCATCATTGGATTGCAGCTGCTAGTGTAATTTCTTTCCACCCAAG
TATTTAATttctaaaattgaattttctgTTGAGATTTGTTTTCACTCAAT
GAATCTTTTAAGCGTTAAATCATTTGTCTTCTTTTTCCAGATCAACCGTA
GCGGTGGTGGCGCAGCCAAAAAGTTCGGTGGCGGTGGTGCCACATCCAAT
AAATGTTTTGTCTGCAACAAGACGGTGTACCCAATGGAAAAATTAGAAGC
CGATAAACATATGTACCACAAGTTCTGTTTCAAATGCAAAACATGTAATC
GAACTGTCGGGTAGGTAAGCTCTTCGTACATCGTCGGGCTCGAAAAGCTT
ATTCTTATCGCATCTCGACTTATTACTATCAATACTACAGCCCTACTGTA
TAATGAGTCTTTGCTGGTTTTCACGATTTCTTCATGTGGGAGTAAGTTTG
TTTGCTGAGAAAATTGTCAATAAGATTGGTTAGTGAATGTCTTTTTGGTA
TCTTTCTGTAGACATTTCTTATTTGTTGCATGATGATTCAGATTACATTG
ACATTATGAAAATTCCGAAAGTTTCACTTTTGAACCTTTATAGTCTTGGA
AACTATGCAGCCTTACAAGGAGAAATTTACTGCAAACCACATCTCAAGCA
ACTATTCAAACTGAAAGGTTTGTTCTTAATTCAAAATGTTATTGACAGCA
TACAgtacaaaatgtttttgaaatagacgatatcggctttcgataaatgc
aatgcattctggtttctagggactctcaaaggaattataatctattataa
ttgatctattataattcctttgagagtcccgagaaaccagaatgcattgc
atttatcgaaagccgatatcgtctattaccaCATCACCGTAGTTACCAAA
CGGCTGAAAAACGAAGTCGTTAGATCTAATAGTAGCAAAACAACTGCCTC
ATTCCAGGAGCTTCGTGATTACTCTCAATAACTGTTCTTTATCATAGTAA
ACTTTTTAACGGAAGAATTTTAAGTCAGGCGGCGCTCATGTTGCCTTCAA
TGAATTTATCAAAGGATGATCGGCATACATTCCAAACCTCATGTTTCAAA
TGTTACAGCTGAAAAGCAGACAGACTTGGTTtgagtttgaatttgaattt
taacGCGATGACAGTTCCATGTTTGATTGGCAGTGAAAATTCAAACTTCT
AGCTATTTCTAGCTTCAATTCGCGTTACTTTGATTTTGAAGTTGAATCTT
TGAATCAATGCTGAAACCCAAATTACTTTTTTCAGTTATTGAAACttcat
gactttttttttgcttgtaggAAATTACGATGAAGGTTTCGGACGCGAGC
AACGAAAAGCAGACTGGATGAACAAAGATGATAAGAACGTGGAAACGATG
AACAACGAAGTGAACGGAACCGCAGGCGATGCAGACGAAGAAGCTCCACT
AAACGATGATTAAATATCGATGTAAAAAGGGCTGAATGTGGGAGAGGGGT
GAAAACGTTTATGATTTTATGATGAACAAAAATGACAAGATATGATGACT
TTTTTATATACTTTAAGTAATTTATAGACAACTGCGAATGACCAGGATGT
TTGTTCTTAAACCCTTATTTTATGAAATTGGGTTGGTAGTTCAATAGCAA
ATTTGGTTGTGATCCTGAGTTTAGTTTGTACTTGAACTATACATTGAACT
TGCTCTTGAACTATAATTTATTTCATACAATTTCAATAatttcacgcagc
atattgtAATTATAATCGAATTCTTTTTTAGttggttttatttttctttc
tcgtTCTTTATTTGCAAAATCTgaagttttttatgatttcttttaGCCTT
CTGCCTACCTCTATatcattcgaatgttttctcatCAAANTCTTTATTTG
CAAACTCTgaagttttttatgatttcttttaGCCTTCTGCCTACCTCTAT
atcattcgaatgttttctcatcaaaattctttaagaagttttttctttct
atGTTTCTTCTTTCATCGATGGACCTCCTTAATTTATTTTGAGTGTTGGG
CACTTTATTTGATCATAATTGACTGATTTAATAAATatattataattata
atttgGGTATATTTAAATAGAgaaattcttaaattttgtgattttgaaat
attttaacttttgttgattttaaCCTGAGAAATTTTGTGTTCTTTGAAAT
TTATGtccttttatgattttttgaactCTTTTTATATAAATAGATATGTT
TAATGATTCAATTGAATTTACATCTCCAGTAAATAATTAGATGTCCAGGC
GTAGACAAGGTATCCAAAACAGCGAGAGAGAATAGGattcatcgtcagct
tgtcaaaactccaactaatatttccaaattttgactcaaaagtatggaat
aatAATTTCAGAGAGTATGGaattcaaattatgatattcttataacaCAG
ACTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016796-exon-sc0000252-1491911889:290302..290373 | TCONS_00016796-exon-sc0000252-1491911889:290302..290373 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1510915933:290302..290373 | TCONS_00016796-exon-sc0000252-1510915933:290302..290373 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1575043694:290302..290373 | TCONS_00016796-exon-sc0000252-1575043694:290302..290373 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1491911889:291142..291311 | TCONS_00016796-exon-sc0000252-1491911889:291142..291311 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1510915933:291142..291311 | TCONS_00016796-exon-sc0000252-1510915933:291142..291311 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1575043694:291142..291311 | TCONS_00016796-exon-sc0000252-1575043694:291142..291311 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1491911889:291595..291668 | TCONS_00016796-exon-sc0000252-1491911889:291595..291668 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1510915933:291595..291668 | TCONS_00016796-exon-sc0000252-1510915933:291595..291668 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1575043694:291595..291668 | TCONS_00016796-exon-sc0000252-1575043694:291595..291668 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1491911889:292322..293457 | TCONS_00016796-exon-sc0000252-1491911889:292322..293457 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1510915933:292322..293457 | TCONS_00016796-exon-sc0000252-1510915933:292322..293457 | Clytia hemisphaerica | exon |
| TCONS_00016796-exon-sc0000252-1575043694:292322..293457 | TCONS_00016796-exon-sc0000252-1575043694:292322..293457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:290302..293457 + |
Blast
BLAST of TCONS_00016796 vs. Swiss-Prot (Human)
Match: LIMD2 (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.826e-30 Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 136 CFVCNKTVYPMEKLEADKHMYHKFCFKCKTCNRTVGLGNYAALQGEIYCKPHLKQLFKLKGNYDEGFGREQRKADWMNKD 375
C C KTVYPME+L ADK ++H CF CK C+ + LG+YAAL GE YCKPH +QLFK KGNYDEGFGR+Q K W +K+
Sbjct: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKE 119
The following BLAST results are available for this feature:
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