TCONS_00016811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016811
Unique NameTCONS_00016811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016811 ID=TCONS_00016811|Name=TCONS_00016811|organism=Clytia hemisphaerica|type=transcript|length=1236bp
ATATGTGTAGTCATCAAGCATGCCAAACACATATCAGCATTAGCCATTCA
ATAGAGTGTCAAAATGTGGATATTACTTTGTTTTAAAACTAAGGGACTAG
CTTATGATTGTAATCTTTGGAACaatacataatttttgaaattcttttga
atCAGATGTGCATGTTGTTAGTCATTTTAATGCCAAAACAACATCAACAG
TCAAAACATTCTAAACCATGTTTAAACTGTAGAAATTATGATTCAATTgg
actttcatttttttgttttgttttttttgtaattactTTCAAAGCttctt
aattttcttaaaaaaattggaaagcATAATGCTAAagtagttaaaaaaaa
aagcctTGTGTACTATAACTTCTGAAtaacatttttgtaaacaaaataat
ttcgtTTGAGATAAATTTGTTCTGCAAAGTTTTTTTGTGCATGAAAGTTA
TCTGACGAGGTGTTGAGATTTTCTCTAACTTggcaagttaaatttttttt
agataaatctTTAATTATAAGTGCAAGTTTATGCTAATCAGTAACCAGTC
AGTTAGCCATGGGCAGATATATTTTGGATTGCATTTTCCATTATCCTGTT
TAACCTGAATTTCTTGGTTGTAAACTGTTTTTGATCTTTCTTCTATTAAC
TCTGCCTAAATCCTTGTTGTAAGGCCATGGCCAAAAAATCTGTAGCTTCA
CCCAACAATTGAATTAACACTTTTTGTTatttattttttattttagcacT
AAAGTGATGTTGCGTATACATGGACATTGTTTGAATTTCAAGGAAATTAA
CCCTAAACTAAGAGTTACAAATCCTTTTGTCTGCACAAGTGAAACCAACT
GGTTAGCCGAGCTATCACTTGGAACTTTGACGTAAAGAAATTATTAAACG
GTTGAACAAGACAACATTTTGGCTGGTGATGAATAAAGATTCGGATGCCG
GCGACTCTAATATAAGCATAATGATCAAACGATTGATAAATATATACTGt
aatgtgtcacagacccggtggtaCTTCTACATACTGTAAAAATCAGACAA
ATTGTACCCGGTTTAGAGAAAAACCCTGACTTTTCACCCACCCGGTACCT
ttcaccttttttataagaaccaacgtttttttttaacccttgggatgttc
ttaactttttttttcttttaaaagcctaagaatatttttattttcatctt
ttagtgggtattttatccattttctgagaaattggg
Run BLAST on NCBI

transcript from alignment at sc0000252:380202..383137-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016811 ID=TCONS_00016811|Name=TCONS_00016811|organism=Clytia hemisphaerica|type=transcript|length=2936bp|location=Sequence derived from alignment at sc0000252:380202..383137- (Clytia hemisphaerica)
ATATGTGTAGTCATCAAGCATGCCAAACACATATCAGCATTAGCCATTCA
ATAGAGTGTCAAAATGTGGATATTACTTTGTTTTAAAACTAAGGGACTAG
CTTATGATTGTAATCTTTGGAACAATACATAATTTTTGAAATTCTTTTGA
ATCAGATGTGCATGTTGTTAGTCATTTTAATGCCAAAACAACATCAACAG
TCAAAACATTCTAAACCATGTTTAAACTGTAGAAATTATGATTCAATTGG
ACTTTCATTTTTTTGTTTTGTTTTTTTTGTAATTACTTTCAAAGCTTCTT
AATTTTCTTAAAAAAATTGGAAAGCATAATGCTAAAGTAGTTAAAAAAAA
AAGCCTTGTGTACTATAACTTCTGAATAACATTTTTGTAAACAAAATAAT
TTCGTTTGAGATAAATTTGTTCTGCAAAGTTTTTTTGTGCATGAAAGTTA
TCTGACGAGGTGTTGAGATTTTCTCTAACTTGGCAAGTTAAATTTTTTTT
AGATAAATCTTTAATTATAAGTGCAAGTTTATGCTAATCAGTAACCAGTC
AGTTAGCCATGGGCAGATATATTTTGGATTGCATTTTCCATTATCCTGTT
TAACCTGAATTTCTTGGTTGTAAACTGTTTTTGATCTTTCTTCTATTAAC
TCTGCCTAAATCCTTGTTGTAAGGCCATGGCCAAAAAATCTGTAGCTTCA
CCCAACAATTGAATTAACACTTTTTGTTATTAATGCTAATAATTATAAAG
TATATTTACATTTATTTTTTATTTTAGCACTAAAGTGATGTTGCGTATAC
ATGGACATTGTTTGAATTTCAAGGAAATTAACCCTAAACTAAGTAAGTCA
TTATTATGTCGCAACATGGTCTTACTCAGTATCTTGACTCTCAAAATTTT
ATTTTACTTCCTCTCCAATGAAGAAAATGATCAGTAAAAGACTACTATAA
AACAATAGAAATTCTTTCCCTGTTGGTTTTTGATAGAAATGTTCATCCCC
ACTGTGAGAATCAGTTCCCCCGGGGCTGTGAGACAGGAGTGTTATCAATA
AAAACAAAGCTTGAGAAGTAAAAAGTTAAAATAACTGGACTTTTTCATCA
GTGAAATATTTTTCCCTAAAATGGCTATCAAAAAAAATTCGAATCACCTC
TAGATATGATTCTCAATAAGTTTGCGCAGTCTTTAAATGTAACTTTTCAA
ATTGGTGGCCCCTCCCAAATGTTTTCATCAAAAGTTGCAAAAGACACCCC
TTTCTCACTGCCCCTTTGGAACTTTTGCTTTCAGTGGGGATAAAAGCTTT
TATCAAAATCCCAATGGGAATAGAAATTATATTGTTCCAAGGTTAAAAGA
TCCAGTGGGGATGGTTTTTGATTGCAATTTTTAAACATTGAATTTAGAAT
GGGGATGAAATGTAAGTCAATTTTTATAGTGGACTGGAATCTCAGGGTAA
TTTTCCATCAGGGACGAAGATAAATTTCTTGCCAAATTTCCCAAAGGAGC
TTTGACAGGGCTTTGACCTATTATTAGAACACATACCGTCTGGTCCCTCA
AGTGTAAGGTTTTACTTATGATGTAAAGTACGATTTAGGTGGTGAAGAAC
TTAAGATGCCACTTAAACTATAATATTTTGTTTTTGTTCCTTTTTAGGAG
TTAAAAATCCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTTCCTTTTT
AGGAGTTACAAATCCTTTTGTCTGCACAAGTGAAACCAACTGGTTAGCCG
AGGTAAGAATAAATATTTTTGAGTTATCTTCGATTACTTGCGTATAAGCC
TATTATTCATTTCCCCATGTAATAACTATATTGAGAAATGTACAATTTTT
GATTGTTTTTCATAAGGCAAAAGGATCTAATATGGTTAACACTTTGTTTC
ACTTTTCAAAGATATTTAACCATATGAACACTTGAGCTGATTTGTAACTC
TCGAATAGCGCTCTGCAACGCATACGTCATAATTATTACTTTTTTTACAT
TTGTACGAGTTGTAATGCGGCTCAAATGCAAGTTCTTATATATCTTTTGT
CAAATGATGCAATTAATGTGCAAAAGAAACGCAAAAGGATTGGAGCTCGT
ACAAACACATCAAGAAGAGTAATGATTATGTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTCTTT
CAGCTATCACTTGGAACTTTGACGTAAAGAAATTATTAAACGGTTGAACA
AGACAACATTTTGGCTGGTGATGAATAAAGATTCGGATGCCGGCGACTCT
AATATAAGCATAATGATCAAACGATTGATAAATATATACTGTAATGTGTC
ACAGACCCGGTGGTACTTCTACATACTGTAAAAATCAGACAAATTGTACC
CGGTTTAGAGAAAAACCCTGACTTTTCACCCACCCGGTAATCTATGATGA
AGGTTTATCTCTGAAGCTGTAAACAGTACCCTTTCACCTTTTTTATAAGA
ACCAATTTTTTTTTAGNAAGGTTTATCTCTGAAGCTGTAAACAGTACCCT
TTCACCTTTTTTATAAGAACCAACGTTTTTTTTTAACCCTTGGGATGTTC
TTAACTTTTTTTTTCTTTTAAAAGCCTAAGAATATTTTTATTTTCATCTT
TTAGTGGGTATTTTATCCATTTTCTGAGAAATTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009409XLOC_009409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016811-exon-sc0000252-1575043694:382410..383137TCONS_00016811-exon-sc0000252-1575043694:382410..383137Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1575043694:382296..382378TCONS_00016811-exon-sc0000252-1575043694:382296..382378Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1575043694:381286..381335TCONS_00016811-exon-sc0000252-1575043694:381286..381335Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1575043694:380449..380684TCONS_00016811-exon-sc0000252-1575043694:380449..380684Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1575043694:380202..380340TCONS_00016811-exon-sc0000252-1575043694:380202..380340Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1510915933:382410..383137TCONS_00016811-exon-sc0000252-1510915933:382410..383137Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1510915933:382296..382378TCONS_00016811-exon-sc0000252-1510915933:382296..382378Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1510915933:381286..381335TCONS_00016811-exon-sc0000252-1510915933:381286..381335Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1510915933:380449..380684TCONS_00016811-exon-sc0000252-1510915933:380449..380684Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1510915933:380202..380340TCONS_00016811-exon-sc0000252-1510915933:380202..380340Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1491911889:382410..383137TCONS_00016811-exon-sc0000252-1491911889:382410..383137Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1491911889:382296..382378TCONS_00016811-exon-sc0000252-1491911889:382296..382378Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1491911889:381286..381335TCONS_00016811-exon-sc0000252-1491911889:381286..381335Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1491911889:380449..380684TCONS_00016811-exon-sc0000252-1491911889:380449..380684Clytia hemisphaericaexon
TCONS_00016811-exon-sc0000252-1491911889:380202..380340TCONS_00016811-exon-sc0000252-1491911889:380202..380340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:380202..383137 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.794355	0.969408	0.255067	0.483137	5.64538	4.3636	2.9657	2.87704	3.94411	2.38927	3.46265	4.67097	3.67773	3.96605	5.83323	4.84737	7.62319	6.83445	2.39797	1.76576	10.8397	9.90045	4.72558	5.09473	3.11591	2.95423	3.20184	1.27581	0.942892	0.906411
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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