TCONS_00016812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016812
Unique NameTCONS_00016812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016812 ID=TCONS_00016812|Name=TCONS_00016812|organism=Clytia hemisphaerica|type=transcript|length=257bp
CCATTGAGTAAAAAAGGACTAGACGTCAAACCAAAAACAACTCTCAAAAA
ACGATAGACAACGACTTCTCTATCAGAGGACGAAGGGTCTTTCCAGAGAA
ATCTCAAAAAGTCTCTATGATCAGGATGGATGCAGATATTCAAGAAAGCT
TGCTTAATATCAGCTAAAATACCAATCTTGTTCATTCTAAAACGtagtaa
aatgtcaaaaatcttAGCAAGTAAATTTGGACCAGGATAAAGGCAATCAT
TCAAANN
Run BLAST on NCBI

transcript from alignment at sc0000252:9000..9256

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016812 ID=TCONS_00016812|Name=TCONS_00016812|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at sc0000252:9000..9256 (Clytia hemisphaerica)
NNTTTGAATGATTGCCTTTATCCTGGTCCAAATTTACTTGCTaagatttt
tgacattttactaCGTTTTAGAATGAACAAGATTGGTATTTTAGCTGATA
TTAAGCAAGCTTTCTTGAATATCTGCATCCATCCTGATCATAGAGACTTT
TTGAGATTTCTCTGGAAAGACCCTTCGTCCTCTGATAGAGAAGTCGTTGT
CTATCGTTTTTTGAGAGTTGTTTTTGGTTTGACGTCTAGTCCTTTTTTAC
TCAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009410XLOC_009410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016812-exon-sc0000252-1491911889:9000..9256TCONS_00016812-exon-sc0000252-1491911889:9000..9256Clytia hemisphaericaexon
TCONS_00016812-exon-sc0000252-1510915933:9000..9256TCONS_00016812-exon-sc0000252-1510915933:9000..9256Clytia hemisphaericaexon
TCONS_00016812-exon-sc0000252-1575043694:9000..9256TCONS_00016812-exon-sc0000252-1575043694:9000..9256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:9000..9256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.687259	2.01056	0	0	203.528	153.507	15.8412	15.5482	2.94887	7.8101	9.02168	1.75957	1.25418	0	2.61825	2.40378	0	1.05761	2.19171	2.78322	0	0	0.787998	0.716404	0.73788	3.95124	0.942368	0	0.762804	0.777176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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