TCONS_00016815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016815
Unique NameTCONS_00016815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016815 ID=TCONS_00016815|Name=TCONS_00016815|organism=Clytia hemisphaerica|type=transcript|length=532bp
ACACTACAATAAAGAATCTCAGAACTATCACAAAATCCATGCAACTCAAC
TCTCAAAGTATCACTGTTGCAGGAAACAAAAGCAAAtctatcaatttcaa
caatcttTACACTTTCCAAAGCGTCTAAAAAACCATACCAAGCACAAGCT
ATGTCTGGTGGAACCTTATCGTCCCAACCACACTTAACTTTGCAAACAAG
CTGAAAAATAGTCTTCACTCTAGCAGTGATAGGAGTCAAAATTCCTAAAG
GGTCGTAAATAGAAGCAGCAAGACTCAAAATGGTTCTCTTAGTTAAGGTT
ATCAATCGACCCTTTTCCAGAAACGAATCAAACCTAAAGACAAATACATC
TTTGGAAATGTCCCACTCAACACCAAGTACCCTTTTGCATTCATCCTGAG
ATTGAAATTGGGATTGAGCAAACGAGCTATCATCTTCAATACACTTGGGT
TGTAACGGTGGTTCTTTAGATGAGAAAAATTCTTGCAGTTCAGCGTCATT
GGAAGTCCATTTCCTTAACTGAAGTCCTGCNN
Run BLAST on NCBI

protein sequence of TCONS_00016815-protein

>TCONS_00016815-protein ID=TCONS_00016815-protein|Name=TCONS_00016815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
AGLQLRKWTSNDAELQEFFSSKEPPLQPKCIEDDSSFAQSQFQSQDECKR
VLGVEWDISKDVFVFRFDSFLEKGRLITLTKRTILSLAASIYDPLGILTP
ITARVKTIFQLVCKVKCGWDDKVPPDIACAWYGFLDALESVKIVEIDRFA
FVSCNSDTLRVELHGFCDSSEILYCS
Run BLAST on NCBI

transcript from alignment at sc0000252:12786..13317

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016815 ID=TCONS_00016815|Name=TCONS_00016815|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000252:12786..13317 (Clytia hemisphaerica)
NNGCAGGACTTCAGTTAAGGAAATGGACTTCCAATGACGCTGAACTGCAA
GAATTTTTCTCATCTAAAGAACCACCGTTACAACCCAAGTGTATTGAAGA
TGATAGCTCGTTTGCTCAATCCCAATTTCAATCTCAGGATGAATGCAAAA
GGGTACTTGGTGTTGAGTGGGACATTTCCAAAGATGTATTTGTCTTTAGG
TTTGATTCGTTTCTGGAAAAGGGTCGATTGATAACCTTAACTAAGAGAAC
CATTTTGAGTCTTGCTGCTTCTATTTACGACCCTTTAGGAATTTTGACTC
CTATCACTGCTAGAGTGAAGACTATTTTTCAGCTTGTTTGCAAAGTTAAG
TGTGGTTGGGACGATAAGGTTCCACCAGACATAGCTTGTGCTTGGTATGG
TTTTTTAGACGCTTTGGAAAGTGTAaagattgttgaaattgatagaTTTG
CTTTTGTTTCCTGCAACAGTGATACTTTGAGAGTTGAGTTGCATGGATTT
TGTGATAGTTCTGAGATTCTTTATTGTAGTGT

Coding sequence (CDS) from alignment at sc0000252:12786..13317

>TCONS_00016815 ID=TCONS_00016815|Name=TCONS_00016815|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000252:12786..13317 (Clytia hemisphaerica)
GCAGGACTTCAGTTAAGGAAATGGACTTCCAATGACGCTGAACTGCAAGA
ATTTTTCTCATCTAAAGAACCACCGTTACAACCCAAGTGTATTGAAGATG
ATAGCTCGTTTGCTCAATCCCAATTTCAATCTCAGGATGAATGCAAAAGG
GTACTTGGTGTTGAGTGGGACATTTCCAAAGATGTATTTGTCTTTAGGTT
TGATTCGTTTCTGGAAAAGGGTCGATTGATAACCTTAACTAAGAGAACCA
TTTTGAGTCTTGCTGCTTCTATTTACGACCCTTTAGGAATTTTGACTCCT
ATCACTGCTAGAGTGAAGACTATTTTTCAGCTTGTTTGCAAAGTTAAGTG
TGGTTGGGACGATAAGGTTCCACCAGACATAGCTTGTGCTTGGTATGGTT
TTTTAGACGCTTTGGAAAGTGTAaagattgttgaaattgatagaTTTGCT
TTTGTTTCCTGCAACAGTGATACTTTGAGAGTTGAGTTGCATGGATTTTG
TGATAGTTCTGAGATTCTTTATTGTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009413XLOC_009413Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016815-proteinTCONS_00016815-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016815-exon-sc0000252-1491911889:12786..13317TCONS_00016815-exon-sc0000252-1491911889:12786..13317Clytia hemisphaericaexon
TCONS_00016815-exon-sc0000252-1510915933:12786..13317TCONS_00016815-exon-sc0000252-1510915933:12786..13317Clytia hemisphaericaexon
TCONS_00016815-exon-sc0000252-1575043694:12786..13317TCONS_00016815-exon-sc0000252-1575043694:12786..13317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:12786..13317 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.727543	0.643667	0.685634	0.452467	144.482	110.993	9.72667	12.2756	1.13432	6.32279	2.05292	1.10565	1.13211	0.640567	1.28886	1.64239	0.692442	1.3748	4.79954	5.10468	0.743385	0.183297	0.251877	0.761233	1.86195	0.976959	0.399448	0.181976	0.655809	0.248418
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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