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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016841 ID=TCONS_00016841|Name=TCONS_00016841|organism=Clytia hemisphaerica|type=transcript|length=242bp
GTAAACTAAGAAagagaaaatttatcaaaaaaataaacataataACCACT
AAAGGTTGCAGATGAACATTTGGAAAATTGgaagaataaaattcatttaC
AAGAACTAAGCGCAAGAGGCAGTAGTTCGCCATCAAGAATGCCACGCGAA
CCTTATTAATTCCAATGAATCAAGCAGTTTTGGCCAAACTATTGAGAAGG
GTTCCCGATTGATATAAAATTGTTTTGAATGCTTACATTTCG Run BLAST on NCBI transcript from alignment at sc0000253:75334..78674+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016841 ID=TCONS_00016841|Name=TCONS_00016841|organism=Clytia hemisphaerica|type=transcript|length=3341bp|location=Sequence derived from alignment at sc0000253:75334..78674+ (Clytia hemisphaerica)
GTAAACTAAGAAagagaaaatttatcaaaaaaataaacataataACCACT
AAAGGTTGCAGATGAACATTTGGAAAATTGgaagaataaaattcatttaC
AAGAACTAAGCGCAAGAGGCAGTAGTTCGCCATCAAGAATGCCACGCGAA
CCTTATTAATTCCAATGAATCAAGCAGTTTTGGCCAAACTATTGAGAAGG
GTTCCCGATTGATATAAAGTAAGTGTCCTTTTTAATAGTTTCACAATAAA
AGCATAGTGTGTGGCCGTAGTGCGATCTTTATGGGGTTCACTTTGGGTCG
TTTGGAGGCAAGGCCGCTTCTTTATCTCTAGTAGGCCCTGATGATATAGC
GGTCTCTCCTCCATAATGAAGTGACCCAGGGTATTTTTAATACCGGGTGC
CGTTGTTCATGCATTTTTTTTCCGATAAAAACGAGAACATGtacatttta
tttcaaacatAGTTTTTATTTAGTTGTAAATTTTCGGATGTAAGTATTAT
ACCAAATCtaatggtgataaaagagatttaaataaaaaaaaatagaaaga
gcATTCAGCTACGACATGCAAGGTTGTTGATTTTTAATTCTCGGCTGggt
cataaaaaaataaaactttgatgTCTCCCTGCTTGATGCTGCTTGATAAT
AGAATTAAATTTTGTTCTCAAATCCtagcaaaaaataaacaattgtTGAT
AAACTGTCACAAAATGGACATTAGCTGTTCTTAAATAACTAAAATAACaa
caaaatggataaagatcagcctttcgaagcagcctcaccacctcaagttt
gcacgccgtcaagatgtactgaagacgaagacctggatcgcttaacatgc
aaaaaatgtaaaagatcagttcattatgagtgcacaTAGTTACCCCTGTG
TCAACTACAAATATTCGTGACATCCTACAacgatcattacttatgttAAA
ACTGCTTACGAATAAAGaaaaacctaagaaataaagtggggaaaaacact
caacatatgatgcaaaataaacttaaaaagaaagacggcgtcatacaaaa
actgaacaacgagGTCAACACCTACACAaaaacccgtgattccatcaaaa
atgacctcAAAACCTTTCTGGCAGGAAAACTACAAGAGATGGATGAAAAG
ACAAGAGGCATGATAAAGGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCttc
ccttatggaattccactgcatttcaaaccttacccccttggaacggaaat
ggacctcctcaacagggggtgcacgattattttctggaaaagcccaatga
caATTAACACATCGCACCTAGGACCTACCTATCCTAACTAGCAAAAGGTA
ACTTCTATCAATTATAGATTGACACCCCCTGCTATAAATTCTTCTGTGAA
ATACTAAGTAAATGATAATCTGTGTTACAACAAAACttaatcaaatatca
acaaataattctacctgtaaaaatgaagatcatacctGTCTGTGTGTTGT
CTGTATTGTGGTGTGTAGATGTTCAAGagcatttctttaaaaaattgtaa
gattcctatcactttattggtgcatttactaactacacaaacataaaata
ctatgctaaaCGAAATATGAACCTCTTTAAGTActctaaaaacaccaaaa
acatgataaaaatacaaaaatccagAGCAAGTCTGACAGCATGTTCAAAt
ccgccatttaaaaaaaaacgagcAATGTTTACTAATGCTTGGTTCCACCT
ACCTAGCACTTACGGAGtgaaatcattaaattttattttagcgagtgagt
ccatattttagaatcttcgacaatgttctagaagtttcaactactttcgt
tttctaatttttttccgCACCGACCACtgccgccgcgaaaggctatcgta
atactttcgctaagcgaaagtAAGAAACTTactatttatttaaaaagaaa
gattACAGAAAGATCTAAAGGTCTGCTGAGGCtcggttgttcttattttt
ttggaacattgagcctcaaattgttgttatcctgttcttatttatagggt
gtaattgaggtattttaggtgttgtacccaatttttacttATTCTTTCAC
CTggctaaattgcttgaaattgagtaatttcaggctcagcattgttctta
aattgatCTTATTTTTTGAGCCCTATTGTcctcataaaattgttcttata
aagaaggtGTACTACTTACTCAATCCTGACTGTATTTTTAAAGAGTTTCT
ATAAATCCTTAATTATCATTGATGACTGACCTTCAGCACACCTGTCATTC
ATTTAGCGatcgaatacacgtttttttataagaacatccaaaatttttga
agccttaagaagttcttaactttttgagttttaagcctaaaatgttctta
actttgttcttataaaaaaatgtgtaaaataaTGTAAAGTTAAGTGGTTA
ATCTGGTCCCATAATCGTggaataaataaaagtatttagCGCTGTCTTAG
TCTACAAGGTAACTGAATTAAAGGGATTTGTCCAATGATTAACAAATCAT
TTAAAATGGCGTTTCAGATTGTTTTGAATGCTTACATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016841-exon-sc0000253-1491911889:75334..75551 | TCONS_00016841-exon-sc0000253-1491911889:75334..75551 | Clytia hemisphaerica | exon |
| TCONS_00016841-exon-sc0000253-1510915933:75334..75551 | TCONS_00016841-exon-sc0000253-1510915933:75334..75551 | Clytia hemisphaerica | exon |
| TCONS_00016841-exon-sc0000253-1575043694:75334..75551 | TCONS_00016841-exon-sc0000253-1575043694:75334..75551 | Clytia hemisphaerica | exon |
| TCONS_00016841-exon-sc0000253-1491911889:78651..78674 | TCONS_00016841-exon-sc0000253-1491911889:78651..78674 | Clytia hemisphaerica | exon |
| TCONS_00016841-exon-sc0000253-1510915933:78651..78674 | TCONS_00016841-exon-sc0000253-1510915933:78651..78674 | Clytia hemisphaerica | exon |
| TCONS_00016841-exon-sc0000253-1575043694:78651..78674 | TCONS_00016841-exon-sc0000253-1575043694:78651..78674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:75334..78674 + |
Blast
The following BLAST results are available for this feature:
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