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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016850 ID=TCONS_00016850|Name=TCONS_00016850|organism=Clytia hemisphaerica|type=transcript|length=1024bp
TGGAAACAAATATATTAAATCTGGAACATTTGAAATATAACCGGAGGACA
AAGAGCGATGAAGCTTGGATTGTTGGCACTGTTTCGCCTGGTCCTACCAG
CGCTTGTTTTATGTTTGAGCGAAACGTACGAGACAGTTGAAGCCCTGGTT
ATCCCAGGATGTCCATCCAATTCAGGACGATACGGATGTTGCGTGGATGG
AATCACACCTGCTCAAGGTCCCAATCAACAAGGATGCCCAGAATACAAGA
GTGAATGCGATATGCCAGCAGTTACTGGTGGTGGAAATGACCGTTTGATC
CGGTATTACTACAATCCGTCAAAGAAAGAATGCGAATCGTTTGCTTATTC
CGGTAAAGGTGGTAACCGGAACAATTTCATCAGTCAACAAGCATGTGAAA
GACGCTGCTCCGAAAATAGTGATTCTGTTTCAATCGAATGTCGTGACGTC
ATAAACACGTGTGATGAATTCAAACGTAAGGGATATTGTAGTCGACGTAT
TGTTTCATCGACATACTGTAGGAAAACATGCAAAACATGCACTTGATGTA
AAAGAGACTGGACTATAGTAAAACAACAATAATCGATTTTAGAGACAAAG
AAATAGAAGAGAAATAATTTCCGATctgttttgaaagaatttttaaaaac
tgcgGATAAAGAATACAACAATTCTTGAAAATTGCGATGCATCATACAAT
ATGGattgttttgaagaaaaaaaattacaaattaaatTTATATTGAAAAG
CATATTTTGAAATACTTATTTTATTTGATAACCCCTTTTTATTATTACTG
TTATTTCATTATTGACCATTAAAAACGACAAAGTACTTGTCCGAAACGAA
ATAAGTGGAGGACTGTATATTTCTATTAGatgtttcttcttctctatcTA
GTTTCGTACTAATCATAAATTACAAATGTCGCGATTTATATATCCAAACT
GTCAATCATAATTTCTATTCCACGACAGTACTTTAAAATCAAGCACCTTC
GTTTTATGCAACTTGCATCCAACA Run BLAST on NCBI transcript from alignment at sc0000253:144921..147172+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016850 ID=TCONS_00016850|Name=TCONS_00016850|organism=Clytia hemisphaerica|type=transcript|length=2252bp|location=Sequence derived from alignment at sc0000253:144921..147172+ (Clytia hemisphaerica)
TGGAAACAAATATATTAAATCTGGAACATTTGAAATATAACCGGAGGACA
AAGAGCGATGAAGCTTGGATTGTTGGCACTGTTTCGCCTGGTCCTACCAG
CGCTTGTTTTATGTAAGTTTATAACAtttataagtttgaaaatctttaaC
GATTTCTTAATATTTCACGTTTGAATCTAAGTCAAAAAGCTGTACCTTTT
TGCTTAAGATTTGACAATAAGATATTAAAAAtttcctaatgaaaatattc
ttaagctAAATCATTATGACTTTTTTGGGATTTAAGATTAAGGTTTTTCA
ATATCTAAATTCTGTCTcatataatttgcagcggagagAAAAAAAGCAat
gacttttgatagaattcgaataagATGGCGGTTTTGTGtttgttgaaaaa
aataatcCGCAGTGGaatgttatcaaaaaaaaaaaaaaaaaattaaaaga
tcgaaaaacgaagatgaaaaatgaagaagaaaaaactcAGCTTTTCGAAA
AATAATGTTATGatcttgtgttttgtttttgtatgccTCCTTTTAATTTA
ACAGTACCTCGCAGTCATTCTTATATAGTCTGTTAATTTCACAAACTAGA
ACGCAGTCCCTTTGTCCTAAACCGTGACGTAACGTCTAGTAAAAGCTAGA
AATCATTTTGTCAATTCTGCTTTGTCATAATAAGAAGTGCGCCTCCTAAA
TGAAAATACCCTTCTTTTTTTCCATATATTAGGTTTGAGCGAAACGTACG
AGACAGTTGAAGCCCTGGTTATCCCAGGATGTCCATCCAATTCAGGACGA
TACGGATGTTGCGTGGATGGAATCACACCTGCTCAAGGTCCCAATCAACA
AGGATGCCCAGGTAAGAACTTTAGCTTCTCATCTTCCCTTTCCCTATTGC
CATTAAGCAATGGTCTTCATTCATTTATAAGGAGAATGGCTTAAAGATGC
ACtcttcatcatcaattttgaatCTCCTTAGATCTGCCTCTGATTAAGTG
AATAGATTGGTTTTGTATTTGTCTTCTGGTCAATTACAAGAACAGTTGGA
TAACCAAGAGATTCGATGAGAACTGACAGCCATTACATCCACAATTATCA
TAGCACAAGGACTTTTAAAGGACATCACTCTAAAGATTTCTTTATGTCAG
CAAAAGAAACACGCCTCCTTACATATGTACTgtttatgaaataaaatatc
attaaattcagttttttttctctcGAATAGAATACAAGAGTGAATGCGAT
ATGCCAGCAGTTACTGGTGGTGGAAATGACCGTTTGATCCGGTATTACTA
CAATCCGTCAAAGAAAGAATGCGAATCGTTTGCTTATTCCGGTAAAGGTG
GTAACCGGAACAATTTCATCAGTCAACAAGCATGTGAAAGACGCTGCTCC
GAAAATAGTGATTCTGGTAGGTCTTAAGATTGTTCTATTTATGATTTTCA
CGTAATGTTTTCCATGGAAACCCAGTGTTCGCCAGTAGTGGCaacttttt
aacaatttttctaTAGCTTTTAATCAACTCTTCCAGGACACAAGGGTGTC
TCCTCTTATATGtatgagaaaatatctttagcGTTACAAATATAAGTTCT
TGCAATTCTTTCTCAACTACGTTGAAaagatttctttcttttctaaTTTT
CACAGTTTCAATCGAATGTCGTGACGTCATAAACACGTGTGATGAATTCA
AACGTAAGGGATATTGTAGTCGACGTATTGTTTCATCGACATACTGTAGG
AAAACATGCAAAACATGCACTTGATGTAAAAGAGACTGGACTATAGTAAA
ACAACAATAATCGATTTTAGAGACAAAGAAATAGAAGAGAAATAATTTCC
GATctgttttgaaagaatttttaaaaactgcgGATAAAGAATACAACAAT
TCTTGAAAATTGCGATGCATCATACAATATGGattgttttgaagaaaaaa
aattacaaattaaatTTATATTGAAAAGCATATTTTGAAATACTTATTTT
ATTTGATAACCCCTTTTTATTATTACTGTTATTTCATTATTGACCATTAA
AAACGACAAAGTACTTGTCCGAAACGAAATAAGTGGAGGACTGTATATTT
CTATTAGatgtttcttcttctctatcTAGTTTCGTACTAATCATAAATTA
CAAATGTCGCGATTTATATATCCAAACTGTCAATCATAATTTCTATTCCA
CGACAGTACTTTAAAATCAAGCACCTTCGTTTTATGCAACTTGCATCCAA
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016850-exon-sc0000253-1491911889:144921..145032 | TCONS_00016850-exon-sc0000253-1491911889:144921..145032 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1510915933:144921..145032 | TCONS_00016850-exon-sc0000253-1510915933:144921..145032 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1575043694:144921..145032 | TCONS_00016850-exon-sc0000253-1575043694:144921..145032 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1491911889:145653..145781 | TCONS_00016850-exon-sc0000253-1491911889:145653..145781 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1510915933:145653..145781 | TCONS_00016850-exon-sc0000253-1510915933:145653..145781 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1575043694:145653..145781 | TCONS_00016850-exon-sc0000253-1575043694:145653..145781 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1491911889:146151..146336 | TCONS_00016850-exon-sc0000253-1491911889:146151..146336 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1510915933:146151..146336 | TCONS_00016850-exon-sc0000253-1510915933:146151..146336 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1575043694:146151..146336 | TCONS_00016850-exon-sc0000253-1575043694:146151..146336 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1491911889:146576..147172 | TCONS_00016850-exon-sc0000253-1491911889:146576..147172 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1510915933:146576..147172 | TCONS_00016850-exon-sc0000253-1510915933:146576..147172 | Clytia hemisphaerica | exon |
| TCONS_00016850-exon-sc0000253-1575043694:146576..147172 | TCONS_00016850-exon-sc0000253-1575043694:146576..147172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:144921..147172 + |
Blast
The following BLAST results are available for this feature:
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