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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016852 ID=TCONS_00016852|Name=TCONS_00016852|organism=Clytia hemisphaerica|type=transcript|length=822bp
CCTGGGCATAACTTTGTGTGTTTTTAttttattttgtttctttgGAACAG
GCCACGACTCGCCACGGATCTTGCCTTCGGCGACGTGTATTCCAGAACAT
ATCCAAAACAGTTCTTGAATTTTCAATCCACTGATAACTAGCAAACACAG
TTGTAGCAGCAGTTGGTTCATTCTTGCTTTTCATGTCATTTCAATGTCCA
TATTTGCAGCCAGATCATGCGTTCAGTCGATCGAATTCCATCAATCGAGA
GCTGTCACCTAACAAGTGTGGAAATCCCTTCCGTAaggaatttttcgaaa
atcactgATCATCAATGTTGGTACGTATAACTCAGCAACCTTCTGTTTCC
TTGTATAGCATCCATCTAGCCTGTGATAAGATGAATGCTTCAAATTGAAG
AAACCAGACAAGGCCAGCGGCTGGAAGCTCAAAACCATTGACTTTGGAGA
ATCGCCTGAGTTGAACAATGTCCAGCTTTAGCCTTGTCCATCGCCCATAA
ATGCGTTTCTTTCAtaaagctttaaaaagctttttcaagAAATTCATAAA
TGAGTGATTGTTTTTATAGTAAAGATAAagataaagatgaagatttgttt
tgttttgtgatCCCATGCTTGCCATCAGCTCCTCTGTAAGTCCAGTCTCC
GGTTGGCTCGGTTGGGCAGGGACGCCAATACCCTGGGATAGCTCCGAGTT
TCGGAAAGCTTTCCACCGTACCCCTGGACGATTGACTTGTTAAGTGATTG
CCGATGACCAACGTCGAGAATttatagaattgaaatcaaaCCCTACTGCT
GTGAAAATTccttttatctttg Run BLAST on NCBI transcript from alignment at sc0000253:155625..157496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016852 ID=TCONS_00016852|Name=TCONS_00016852|organism=Clytia hemisphaerica|type=transcript|length=1872bp|location=Sequence derived from alignment at sc0000253:155625..157496+ (Clytia hemisphaerica)
CCTGGGCATAACTTTGTGTGTTTTTAGTAAGTGAAATTTATGTCAACTAG
GAACGGCAGCATGGTGTTAGCTCAGTTGCTCAGTTGGTTTGGCGTACACC
TTACAATATAAGGGTAAATCAAAGTACATGTTTGAGACATAGTGGCTGCA
CCGAAATCTAATCCACTGGGAGGATGATGAATGAGAAATTAGCGTATCTC
AAAGTTGTCTTAACGGAGTTCGGCAATGATGTACACTGTAGCTATCAGTT
TCCATCATTCAGACGGTCGTTTACAAATAGGAGGTTGTTAAATGTAGGCC
AATATCAATCATAGTAACTAAACTGCATAGTTAGTGAAATTGTTAGAAAT
TTAACTTCATATTTAGTGCAAGTTACCTTAGCCTGGGTAAAAAAATCAAT
GTTATCATCATGGagctaatgtttttttttctctaagcTAAACATCTGTC
AGTTTTGTGGCCATGAAAACTTTTACCGgtcctaaaaaaaaaattcaaaa
tcctaATTACTTTCGAATCAATCATATGCGGTCAAGGCAAAAGTTACGGG
TCCTAAGGGTTGGactcctactattctattgtGTCCATCTTTATCTTCTG
CACCTATTTTTGGTCGAAAACAAGTTTAAcacattattttgttttttttt
ggtagATGCAAGGAGTGATCCTCCGCCTCCACCTTTTTTCATTCTTCCAT
CAAGTTTATCCACAATAAAGATCTAATTACATGGTTTTCATAGATGAAAA
TATTATAGGTGATATTTACTAAAAAGCTCAACGAACTTGTTGAAATTCGT
CGCGTTTTTCAGTAGGTATCCCTAAACAACCTAGAGAAAACCAAAGACTT
CATTCAAACTCGAATCCAGTCCCTTAGCTCACTtatttatgattctgata
gcgctcacgatTGCATCACAAccatcagtaaaataaaaaaagtggaGCAA
GTCTTTTTAGGTACGAGATTGAATTTCATTCTCGATATGCATTGAATTGA
AGCCCCAGTTTATCTCCCGGTTAAGTTAAATAAATACAGGCGTTAATATT
TATGATGTTATTATAAATTTCagtagttttattttgtttctttgGAACAG
GCCACGACTCGCCACGGATCTTGCCTTCGGCGACGTGTATTCCAGAACAT
ATCCAAAACAGTTCTTGAATTTTCAATCCACTGATAACTAGCAAACACAG
TTGTAGCAGCAGTTGGTTCATTCTTGCTTTTCATGTCATTTCAATGTCCA
TATTTGCAGCCAGATCATGCGTTCAGTCGATCGAATTCCATCAATCGAGA
GCTGTCACCTAACAAGTGTGGAAATCCCTTCCGTAaggaatttttcgaaa
atcactgATCATCAATGTTGGTACGTATAACTCAGCAACCTTCTGTTTCC
TTGTATAGCATCCATCTAGCCTGTGATAAGATGAATGCTTCAAATTGAAG
AAACCAGACAAGGCCAGCGGCTGGAAGCTCAAAACCATTGACTTTGGAGA
ATCGCCTGAGTTGAACAATGTCCAGCTTTAGCCTTGTCCATCGCCCATAA
ATGCGTTTCTTTCAtaaagctttaaaaagctttttcaagAAATTCATAAA
TGAGTGATTGTTTTTATAGTAAAGATAAagataaagatgaagatttgttt
tgttttgtgatCCCATGCTTGCCATCAGCTCCTCTGTAAGTCCAGTCTCC
GGTTGGCTCGGTTGGGCAGGGACGCCAATACCCTGGGATAGCTCCGAGTT
TCGGAAAGCTTTCCACCGTACCCCTGGACGATTGACTTGTTAAGTGATTG
CCGATGACCAACGTCGAGAATttatagaattgaaatcaaaCCCTACTGCT
GTGAAAATTccttttatctttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016852-exon-sc0000253-1491911889:155625..155650 | TCONS_00016852-exon-sc0000253-1491911889:155625..155650 | Clytia hemisphaerica | exon |
| TCONS_00016852-exon-sc0000253-1510915933:155625..155650 | TCONS_00016852-exon-sc0000253-1510915933:155625..155650 | Clytia hemisphaerica | exon |
| TCONS_00016852-exon-sc0000253-1575043694:155625..155650 | TCONS_00016852-exon-sc0000253-1575043694:155625..155650 | Clytia hemisphaerica | exon |
| TCONS_00016852-exon-sc0000253-1491911889:156701..157496 | TCONS_00016852-exon-sc0000253-1491911889:156701..157496 | Clytia hemisphaerica | exon |
| TCONS_00016852-exon-sc0000253-1510915933:156701..157496 | TCONS_00016852-exon-sc0000253-1510915933:156701..157496 | Clytia hemisphaerica | exon |
| TCONS_00016852-exon-sc0000253-1575043694:156701..157496 | TCONS_00016852-exon-sc0000253-1575043694:156701..157496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:155625..157496 + |
Blast
The following BLAST results are available for this feature:
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