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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016870 ID=TCONS_00016870|Name=TCONS_00016870|organism=Clytia hemisphaerica|type=transcript|length=944bp
ttataaatcaaaataaaaacaattatttactTTGTCCCATGACACGCGAC
CTAAATACAAAACAAAAGCGCAGCTTCTCTTTCTCTTACCAAGAGTaact
attttagttaaaaagtATGCATAAAAATGAATGTCCTTTTTCATATTGAT
AATTTagcaataaaatacctttgatGTCTCTAACAGCTCCATGAAATATC
CTTAAAATATTGTTATCTTACACAAGGAACAGTTATTGCTGATTATTATC
CATTTGTTTTACCAGTTCAAATTCATAGCTGTTTTCTTTTACCAGTTGGG
GTTTCCTGGAGGTCTCATACCGGGTGGAGGTCCTCCCATCATTCCTGGTG
GTGGTGGCCCTCCTCGGCCATACTGTTGTGGTGGTCCTCCCATCATTCCT
GGTGGTGGTGGCCCTCCTCGGCCATACTGTTGTGGTGGTGGAGCCATTGC
TTGTTGTGATGGGCCACCGACTCCACGAACGGGACCAGCCAGACCAGCAG
GTGCAGCTCCCATACTTGGTGTGGGCATTCCTCGGCCAGCTGCACGTCCC
ATACCAGCGCCAGGGGTGGCTTTAGCAGCTGGTGTTTTGTTTCGGTCCTC
TTTTGATGGAGGAGCTTCAACAGTCATTGAAACTAAATGTTCTCCTCTTA
GTAAAACAAGACCAAGGGCACGTTTTTCCTCACGTCCCTTTTCGGAGCCG
CCCTTGGATTTGATCTTCCTGAACTCATCACAGTCACCAAGAATAAGATT
CATGTGTTTGTCAAAAGCCAAGAATGTACCAATAAATAATCGACCATCTT
GTAAATGACATCTCATTCTGTAGTTGATGTGTACCAACATTTTGGCACTC
TTTCCTAATTGAGGCAtcttgatattatttttctattaGTTCCCTGAAAA
gataaataaacataaaaatcgGTACAGTATTTCAACATGACATA Run BLAST on NCBI transcript from alignment at sc0000253:37098..38723- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016870 ID=TCONS_00016870|Name=TCONS_00016870|organism=Clytia hemisphaerica|type=transcript|length=1626bp|location=Sequence derived from alignment at sc0000253:37098..38723- (Clytia hemisphaerica)
TTATAAATCAAAATAAAAACAATTATTTACTTTGTCCCATGACACGCGAC
CTAAATACAAAACAAAAGCGCAGCTTCTCTTTCTCTTACCAAGAGTAACT
ATTTTAGTTAAAAAGTATGCATAAAAATGAATGTCCTTTTTCATATTGAT
AATTTAGCAATAAAATACCTTTGATGTCTCTAACAGCTCCATGAAATATC
CTTAAAATATTGTTATCTTACACAAGGAACAGTTATTGCTGATTATTATC
CATTTGTTTTACCAGTTCAAATTCATAGCTGTTTTCTTTTACCAGTTGGG
GTTTCCTGGAGGTCTCATACCGGGTGGAGGTCCTCCCATCATTCCTGGTG
GTGGTGGCCCTCCTCGGCCATACTGTTGTGGTGGTGGAGCCATTGCTNCT
TGAATGATTCTAATCTTACTTTTTATTTTAAATTCATCTGAAAATCAATA
AGTATACAAGCAGAATATTTTATGCTCCTTAAAAATAGGGATCAGAGAAA
ATAAATCGAGTACTTCCATATAACGAAATCTGGCCTTAAAACCAAAACAT
AGGTTTGAAAGTAGTCGGCCAACATTTTTTAGGGATTTATTATGTCCGAA
AAATGCAATATAAAGCACATGAATTTTGAAAAGGTGAAAATGATACAACC
TTTAAATAATCAGGAATTTTGAAGGATTTCAGATTATAACGCAGTGGCTA
ATCTGAAGAAATTAAAAAGACAAAGTCGTTAAAATGTTATAAATCAAAAT
AAAAACAATTATTTACTTTGTCTCATGACACGCGACCTAAATACAAAACA
AAAGCGCAGCTTCTCTTTCTCTTACCAAGAGTAACTATTTTGGTTAAAAA
GTATGCATAAAAATGAATGTCCTTTTTCATATTGATAATTTAGCAATAAA
ACACCTTTGATGTCTCTAACAGCTCCATGAAATATCCTTAAAATATTGTT
ATCTTACACAAGGAACAGTTATTGCTGATTATTATCCATTTGTTTTACCA
GTTCAAATTCATAGCTGTTTTCTTTTACCAGTTGGGGTTTCCTGGAGGTC
TCATACCGGGTGGAGGTCCTCCCATCATTCCTGGTGGTGGTGGCCCTCCT
CGGCCATACTGTTGTGGTGGTGGAGCCATTGCTTGTTGTGATGGGCCACC
GACTCCACGAACGGGACCAGCCAGACCAGCAGGTGCAGCTCCCATACTTG
GTGTGGGCATTCCTCGGCCAGCTGCACGTCCCATACCAGCGCCAGGGGTG
GCTTTAGCAGCTGGTGTTTTGTTTCGGTCCTCTTTTGATGGAGGAGCTTC
AACAGTCATTGAAACTAAATGTTCTCCTCTTAGTAAAACAAGACCAAGGG
CACGTTTTTCCTCACGTCCCTTTTCGGAGCCGCCCTTGGATTTGATCTTC
CTGAACTCATCACAGTCACCAAGAATAAGATTCATGTGTTTGTCAAAAGC
CAAGAATGTACCAATAAATAATCGACCATCTTGTAAATGACATCTCATTC
TGTAGTTGATGTGTACCAACATTTTGGCACTCTTTCCTAATTGAGGCATC
TTGATATTATTTTTCTATTAGTTCCCTGAAAAGATAAATAAACATAAAAA
TCGGTACAGTATTTCAACATGACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016870-exon-sc0000253-1575043694:38341..38723 | TCONS_00016870-exon-sc0000253-1575043694:38341..38723 | Clytia hemisphaerica | exon |
| TCONS_00016870-exon-sc0000253-1575043694:37098..37658 | TCONS_00016870-exon-sc0000253-1575043694:37098..37658 | Clytia hemisphaerica | exon |
| TCONS_00016870-exon-sc0000253-1510915933:38341..38723 | TCONS_00016870-exon-sc0000253-1510915933:38341..38723 | Clytia hemisphaerica | exon |
| TCONS_00016870-exon-sc0000253-1510915933:37098..37658 | TCONS_00016870-exon-sc0000253-1510915933:37098..37658 | Clytia hemisphaerica | exon |
| TCONS_00016870-exon-sc0000253-1491911889:38341..38723 | TCONS_00016870-exon-sc0000253-1491911889:38341..38723 | Clytia hemisphaerica | exon |
| TCONS_00016870-exon-sc0000253-1491911889:37098..37658 | TCONS_00016870-exon-sc0000253-1491911889:37098..37658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:37098..38723 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00016870 vs. Swiss-Prot (Human)
Match: RSMB (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 5.398e-44 Identity = 89/135 (65.93%), Postives = 96/135 (71.11%), Query Frame = -3
Query: 463 LGKSAKMLVHINYRMRCHLQDGRLFIGTFLAFDKHMNLILGDCDEFRKIKSKGGSEKGREEKRALGLVLLRGEHLVSMTVEAPPSKED---RNKTPAAKXXXXXXXXXXXXXXXXTPSMGAAPAGLAGPVRGVGG 858
+GKS+KML HI+YRMRC LQDGR+FIGTF AFDKHMNLIL DCDEFRKIK K + REEKR LGLVLLRGE+LVSMTVE PP K+ R A PG G G P M APAGLAGPVRGVGG
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVP-MPQAPAGLAGPVRGVGG 136
The following BLAST results are available for this feature:
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