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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016872 ID=TCONS_00016872|Name=TCONS_00016872|organism=Clytia hemisphaerica|type=transcript|length=1020bp
CAACCTTTAAATAATCAGGAATTTTGAAGGATTTCAGATTATAACGCAGT
GGCTAATGGGAAGAAATTAAAAAGACAAAGTCGTTAAAATGttataaatc
aaaataaaaacaattatttactTTGTCCCATGACACGCGACCTAAATACA
AAACAAAAGCGCAGCTTCTCTTTCTCTTACCAAGAGTaactattttagtt
aaaaagtATGCATAAAAATGAATGTCCTTTTTCATATTGATAATTTagca
ataaaatacctttgatGTCTCTAACAGCTCCATGAAATATCCTTAAAATA
TTGTTATCTTACACAAGGAACAGTTATTGCTGATTATTATCCATTTGTTT
TACCAGTTCAAATTCATAGCTGTTTTCTTTTACCAGTTGGGGTTTCCTGG
AGGTCTCATACCGGGTGGAGGTCCTCCCATCATTCCTGGTGGTCTCATAC
CGGGTGGAGGTCCTCCCATCATTCCTGGTGGTGGTGGCCCTCCTCGGCCA
TACTGTTGTGGTGGTGGAGCCATTGCTTGTTGTGATGGGCCACCGACTCC
ACGAACGGGACCAGCCAGACCAGCAGGTGCAGCTCCCATACTTGGTGTGG
GCATTCCTCGGCCAGCTGCACGTCCCATACCAGCGCCAGGGGTGGCTTTA
GCAGCTGGTGTTTTGTTTCGGTCCTCTTTTGATGGAGGAGCTTCAACAGT
CATTGAAACTAAATGTTCTCCTCTTAGTAAAACAAGACCAAGGGCACGTT
TTTCCTCACGTCCCTTTTCGGAGCCGCCCTTGGATTTGATCTTCCTGAAC
TCATCACAGTCACCAAGAATAAGATTCATGTGTTTGTCAAAAGCCAAGAA
TGTACCAATAAATAATCGACCATCTTGTAAATGACATCTCATTCTGTAGT
TGATGTGTACCAACATTTTGGCACTCTTTCCTAATTGAGGCAtcttgata
ttatttttctattaGTTCCCTGAAAAgataaataaacataaaaatcgGTA
CAGTATTTCAACATGACATA Run BLAST on NCBI transcript from alignment at sc0000253:37098..38814- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016872 ID=TCONS_00016872|Name=TCONS_00016872|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at sc0000253:37098..38814- (Clytia hemisphaerica)
CAACCTTTAAATAATCAGGAATTTTGAAGGATTTCAGATTATAACGCAGT
GGCTAATGGGAAGAAATTAAAAAGACAAAGTCGTTAAAATGTTATAAATC
AAAATAAAAACAATTATTTACTTTGTCCCATGACACGCGACCTAAATACA
AAACAAAAGCGCAGCTTCTCTTTCTCTTACCAAGAGTAACTATTTTAGTT
AAAAAGTATGCATAAAAATGAATGTCCTTTTTCATATTGATAATTTAGCA
ATAAAATACCTTTGATGTCTCTAACAGCTCCATGAAATATCCTTAAAATA
TTGTTATCTTACACAAGGAACAGTTATTGCTGATTATTATCCATTTGTTT
TACCAGTTCAAATTCATAGCTGTTTTCTTTTACCAGTTGGGGTTTCCTGG
AGGTCTCATACCGGGTGGAGGTCCTCCCATCATTCCTGGTGGTGGTGGCC
CTCCTCGGCCATACTGTTGTGGTGGTGGAGCCATTGCTNCTTGAATGATT
CTAATCTTACTTTTTATTTTAAATTCATCTGAAAATCAATAAGTATACAA
GCAGAATATTTTATGCTCCTTAAAAATAGGGATCAGAGAAAATAAATCGA
GTACTTCCATATAACGAAATCTGGCCTTAAAACCAAAACATAGGTTTGAA
AGTAGTCGGCCAACATTTTTTAGGGATTTATTATGTCCGAAAAATGCAAT
ATAAAGCACATGAATTTTGAAAAGGTGAAAATGATACAACCTTTAAATAA
TCAGGAATTTTGAAGGATTTCAGATTATAACGCAGTGGCTAATCTGAAGA
AATTAAAAAGACAAAGTCGTTAAAATGTTATAAATCAAAATAAAAACAAT
TATTTACTTTGTCTCATGACACGCGACCTAAATACAAAACAAAAGCGCAG
CTTCTCTTTCTCTTACCAAGAGTAACTATTTTGGTTAAAAAGTATGCATA
AAAATGAATGTCCTTTTTCATATTGATAATTTAGCAATAAAACACCTTTG
ATGTCTCTAACAGCTCCATGAAATATCCTTAAAATATTGTTATCTTACAC
AAGGAACAGTTATTGCTGATTATTATCCATTTGTTTTACCAGTTCAAATT
CATAGCTGTTTTCTTTTACCAGTTGGGGTTTCCTGGAGGTCTCATACCGG
GTGGAGGTCCTCCCATCATTCCTGGTGGTGGTGGCCCTCCTCGGCCATAC
TGTTGTGGTGGTGGAGCCATTGCTTGTTGTGATGGGCCACCGACTCCACG
AACGGGACCAGCCAGACCAGCAGGTGCAGCTCCCATACTTGGTGTGGGCA
TTCCTCGGCCAGCTGCACGTCCCATACCAGCGCCAGGGGTGGCTTTAGCA
GCTGGTGTTTTGTTTCGGTCCTCTTTTGATGGAGGAGCTTCAACAGTCAT
TGAAACTAAATGTTCTCCTCTTAGTAAAACAAGACCAAGGGCACGTTTTT
CCTCACGTCCCTTTTCGGAGCCGCCCTTGGATTTGATCTTCCTGAACTCA
TCACAGTCACCAAGAATAAGATTCATGTGTTTGTCAAAAGCCAAGAATGT
ACCAATAAATAATCGACCATCTTGTAAATGACATCTCATTCTGTAGTTGA
TGTGTACCAACATTTTGGCACTCTTTCCTAATTGAGGCATCTTGATATTA
TTTTTCTATTAGTTCCCTGAAAAGATAAATAAACATAAAAATCGGTACAG
TATTTCAACATGACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016872-exon-sc0000253-1575043694:38374..38814 | TCONS_00016872-exon-sc0000253-1575043694:38374..38814 | Clytia hemisphaerica | exon |
| TCONS_00016872-exon-sc0000253-1575043694:37098..37676 | TCONS_00016872-exon-sc0000253-1575043694:37098..37676 | Clytia hemisphaerica | exon |
| TCONS_00016872-exon-sc0000253-1510915933:38374..38814 | TCONS_00016872-exon-sc0000253-1510915933:38374..38814 | Clytia hemisphaerica | exon |
| TCONS_00016872-exon-sc0000253-1510915933:37098..37676 | TCONS_00016872-exon-sc0000253-1510915933:37098..37676 | Clytia hemisphaerica | exon |
| TCONS_00016872-exon-sc0000253-1491911889:38374..38814 | TCONS_00016872-exon-sc0000253-1491911889:38374..38814 | Clytia hemisphaerica | exon |
| TCONS_00016872-exon-sc0000253-1491911889:37098..37676 | TCONS_00016872-exon-sc0000253-1491911889:37098..37676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:37098..38814 - |
Blast
BLAST of TCONS_00016872 vs. Swiss-Prot (Human)
Match: RSMB (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 1.023e-43 Identity = 89/135 (65.93%), Postives = 96/135 (71.11%), Query Frame = -3
Query: 539 LGKSAKMLVHINYRMRCHLQDGRLFIGTFLAFDKHMNLILGDCDEFRKIKSKGGSEKGREEKRALGLVLLRGEHLVSMTVEAPPSKED---RNKTPAAKXXXXXXXXXXXXXXXXTPSMGAAPAGLAGPVRGVGG 934
+GKS+KML HI+YRMRC LQDGR+FIGTF AFDKHMNLIL DCDEFRKIK K + REEKR LGLVLLRGE+LVSMTVE PP K+ R A PG G G P M APAGLAGPVRGVGG
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVP-MPQAPAGLAGPVRGVGG 136
The following BLAST results are available for this feature:
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