TCONS_00016880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016880
Unique NameTCONS_00016880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2693

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016880 ID=TCONS_00016880|Name=TCONS_00016880|organism=Clytia hemisphaerica|type=transcript|length=2693bp
CTCTATTTTGAGATACAAAATTAAGTATATTTTAGTATAGAGTAAATGGT
TTTAGAAAATCACAAATTTAACCAAATACTGATAACTGATGAACTGATGT
CCATTTCCCAACAATCATTAAtaagtttttttgtgaaaaacctCTACATG
TTATTTAAATGATAATCCAACACCATATAAAAAGTTCAGAATATTCCAAC
AAAGATACTTTCGACGTTAACTAAATCTTCTCCAAAGACGGTAAAAACAA
GGATGTTAAACTCGTGCTTCTCGGCGACTCTTGGTGTTTGTTGTTTTCGT
ATGTGTCTCCTTCTCTTCTCTTCTCTTTTCCTCTCTAGGTCATATTTTTG
GGTGATTTTATACCATTTGTCGGATAGGCAATTTCGTAAGTTATGGTCGT
TAGGACCAGGACGGAAATCATTTTGTGTGTTATGTTATGTCGTTCTGGGG
CCTAGCGGAAGTGTCGTTAGCCCCAAATGGACCTCCTACGTTTAGCAGTT
aatgttaattaattgaaattaattgaaattaattgaaattaataaaatga
aaacgctGAATCACATATTTCTTAACAATAAAAGTCCGTTGATCTTAGTC
AAACCAGTTTGACAAGTCTGTCTGCCGTACCTCCGGATATCCTTATAAGG
TGTTAAGAACGTGTGTAGACACCTATAAAAAGTGCAAGGTCTGTTCGTTA
GATTCAATATCAATCTTTCATGTGCTTTCATTTGAAACATTTATGACATG
AAAACTCATATATAGCTGGAAATTCtccatttaaaatttgaaaatcgatA
CTGGATACTGAATACTAGATACGTAGCTTTAATCTTAccaacaaaatgta
caaaaaccTAGATAAAGAAGCAGGGAGTGACGAGCCTGTAGACATCAAGC
AATGGGAACGCAAACGTTATTGGACAACCAAAGCTTTCACATTGGAGTGT
ATCATGCTAGGTATGTTTTGAATCATAAAATACTGATTCGAATCCAGTTA
CTTTGTTTTTCCTTACTCTGATAGCAATCCTTTTCAATGACGTTCATCAG
TCAATATTAACCATCCCGAACAGTTTTTGAACAaatcaattcttcttttt
tgtagGTATGGAATATTCGGTGACATTTCTCACACTCTGGCTGTACATCA
AGGAAATGATCAACACAGATCAGCCAAAGCTATTCTACAGCTTAGTAGCT
TCCTCGTACCTGATTGCAGCTGTTATCTTATCAGTCTTCATCGGACGGTG
GGTCGACCGCACGCGTAAAGTACGTCAAATCTTCCTGATCTGCAACACCT
TAGTTATCATCGGTAACATAATGTATGCTTTCCATTTCTCGCCTTGGTTC
TTGGTTTTCGGCCGATTGGTGTCTGGCGCTGATGGGCCACTCAGGTCGGT
GATTTCTGGAGAGATTGCAAGATGTTATCCAGATTCAGAAGTCCTCAGTA
GATTTTCTTCCATGGGAATGGCATTTGCACTTGGTTTCATTGTTGGACCT
GGAGTTAATTTCATGTTTACGACGGTCGATTTCAACATTGGTGCTTGGCA
CGTAACTTATGTGAACATTCCTGGTGTTTATATggctttgtttttcttta
tcacTCAGaTATGCGTCTTCTTCATGGTTCATGATCTCTCACGTGAGTAC
GACCTCAAAGCTGACGCCATCCTTAAACCAATTTTACCAGGAGATATCAA
ACCACTACCAGTTACAACAAGCTTTTTTTATGCTCCATCCAACGCTAATA
CCCAATCACAATCAGATCGGTTCACAAAATCAGTTCAAATTCCAGTCAAA
CCAAAAGAAACAACCATCAACTTTTACGATGACACTTTGATTGAAACAGC
ACTTCGTACTCAACAAGAACAAGAACGACGTaacaaattcaaaatgcagC
GACTCGAAATGTCTGGTATGTTTATAAGACCCTTTGCATTCCCAAAATTA
GCATCCAATCAAGTTGTTCCAGTAATCACTGAAGATTCATCCCTAACATC
CAGCTCCTCGTCAAACTACAGCTCTATCTCCTCCTCATCATCAACATCCA
GTGATGAACAATCCAAAGCTGACCATATCCTCTGTACCATCCTAACCAAT
GCAGATTCTCTCCTGATCCTCGCGCTCACCTTCATTCTCTGGTACTGGAT
GGTTGCATTTGATATGTGGTTGCCAATTATGGTGGTCGATGTTATGGAGA
TGAGCATTACAGAACTCAATGGCATTGTCTTCGGTTTCGGTTGCATCTCA
GCTGTTATTCTTGGTATAATGTCTTTAAAATCATTCTCTGATCGAATGTT
GTACAATCTCTCAATCATATGTATGATCTCTTTAGCTATAATGGAGCTCA
TCTTCATCTACATGCGATTCCAACATTCCCAAATGTATGTCAATATTGTC
TTATGGATCATTTGGGGCACCTTATTTGCCATTGTGGTTATTATGGATGA
AGTATTCCTGGTTGGTGTTATGGCAAAGATGACCAGCTCTAAAGTACAAA
CATTCTCTGAGAGCCTTCGACTCTCAATGTCACGCTTCGGAGCTTTATTA
gctttgctgacatcagcagcTTTGTTTGAATGGATTGAATATGTATGTGG
GGTTGGAGTTATTGTATCGTTACTGACTTTAGTAATTTTGATTAAACGGA
GAAAATCATTGAGAGCTCCCGTGATTTGTATTAAGTAAATTTT
Run BLAST on NCBI

transcript from alignment at sc0000253:184239..187171-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016880 ID=TCONS_00016880|Name=TCONS_00016880|organism=Clytia hemisphaerica|type=transcript|length=2933bp|location=Sequence derived from alignment at sc0000253:184239..187171- (Clytia hemisphaerica)
CTCTATTTTGAGATACAAAATTAAGTATATTTTAGTATAGAGTAAATGGT
TTTAGAAAATCACAAATTTAACCAAATACTGATAACTGATGAACTGATGT
CCATTTCCCAACAATCATTAATAAGTTTTTTTGTGAAAAACCTCTACATG
TTATTTAAATGATAATCCAACACCATATAAAAAGTTCAGAATATTCCAAC
AAAGATACTTTCGACGTTAACTAAATCTTCTCCAAAGACGGTAAAAACAA
GGATGTTAAACTCGTGCTTCTCGGCGACTCTTGGTGTTTGTTGTTTTCGT
ATGTGTCTCCTTCTCTTCTCTTCTCTTTTCCTCTCTAGGTCATATTTTTG
GGTGATTTTATACCATTTGTCGGATAGGCAATTTCGTAAGTTATGGTCGT
TAGGACCAGGACGGAAATCATTTTGTGTGTTATGTTATGTCGTTCTGGGG
CCTAGCGGAAGTGTCGTTAGCCCCAAATGGACCTCCTACGTTTAGCAGTT
AATGTTAATTAATTGAAATTAATTGAAATTAATTGAAATTAATAAAATGA
AAACGCTGAATCACATATTTCTTAACAATAAAAGTCCGTTGATCTTAGTC
AAACCAGTTTGACAAGTCTGTCTGCCGTACCTCCGGATATCCTTATAAGG
TGTTAAGAACGTGTGTAGACACCTATAAAAAGTGCAAGGTCTGTTCGTTA
GATTCAATATCAATCTTTCATGTGCTTTCATTTGAAACATTTATGACATG
AAAACTCATATATAGCTGGAAATTCTCCATTTAAAATTTGAAAATCGATA
CTGGATACTGAATACTAGATACGTAGCTTTAATCTTACCAACAAAATGTA
CAAAAACCTAGATAAAGAAGCAGGGAGTGACGAGCCTGTAGACATCAAGC
AATGGGAACGCAAACGTTATTGGACAACCAAAGCTTTCACATTGGAGTGT
ATCATGCTAGGTATGTTTTGAATCATAAAATACTGATTCGAATCCAGTTA
CTTTGTTTTTCCTTACTCTGATAGCAATCCTTTTCAATGACGTTCATCAG
TCAATATTAACCATCCCGAACAGTTTTTGAACAAATCAATTCTTCTTTTT
TGTAGGTATGGAATATTCGGTGACATTTCTCACACTCTGGCTGTACATCA
AGGAAATGATCAACACAGATCAGCCAAAGCTATTCTACAGCTTAGTAGCT
TCCTCGTACCTGATTGCAGCTGTTATCTTATCAGTCTTCATCGGACGGTG
GGTCGACCGCACGCGTAAAGTACGTCAAATCTTCCTGATCTGCAACACCT
TAGTTATCATCGGTAACATAATGTATGCTTTCCATTTCTCGCCTTGGTTC
TTGGTTTTCGGCCGATTGGTGTCTGGCGCTGATGGGCCACTCAGGTCGGT
GATTTCTGGAGAGATTGCAAGATGTTATCCAGATTCAGAAGTCCTCAGTA
GATTTTCTTCCATGGGAATGGCATTTGCACTTGGTTTCATTGTTGGACCT
GGAGTTAATTTCATGTTTACGACGGTCGATTTCAACATTGGTGCTTGGCA
CGTAACTTATGTGAACATTCCTGGTGTTTATATGGCTTTGTTTTTCTTTA
TCACTCAGGTAATTGTCACATTATATAAAAGAATTCATCCACCTTACCAT
TACCTCGCTATTCCAATATTTTTATTCGATTATAATAAAGCAAAAAATGA
AGTAGGGCTATAACCATTTTTTCCCAAAAATACTTTGTTAGAAAATGGAC
TCATATTGGGATTTTAGACTTTTAAGTCTGCTTTAATGTACTATAGATCT
TAAATTAAAGTAGTTGTTATTTAATGATCGCTGAATTTCTTTTTACAGAT
ATGCGTCTTCTTCATGGTTCATGATCTCTCACGTGAGTACGACCTCAAAG
CTGACGCCATCCTTAAACCAATTTTACCAGGAGATATCAAACCACTACCA
GTTACAACAAGCTTTTTTTATGCTCCATCCAACGCTAATACCCAATCACA
ATCAGATCGGTTCACAAAATCAGTTCAAATTCCAGTCAAACCAAAAGAAA
CAACCATCAACTTTTACGATGACACTTTGATTGAAACAGCACTTCGTACT
CAACAAGAACAAGAACGACGTAACAAATTCAAAATGCAGCGACTCGAAAT
GTCTGGTATGTTTATAAGACCCTTTGCATTCCCAAAATTAGCATCCAATC
AAGTTGTTCCAGTAATCACTGAAGATTCATCCCTAACATCCAGCTCCTCG
TCAAACTACAGCTCTATCTCCTCCTCATCATCAACATCCAGTGATGAACA
ATCCAAAGCTGACCATATCCTCTGTACCATCCTAACCAATGCAGATTCTC
TCCTGATCCTCGCGCTCACCTTCATTCTCTGGTACTGGATGGTTGCATTT
GATATGTGGTTGCCAATTATGGTGGTCGATGTTATGGAGATGAGCATTAC
AGAACTCAATGGCATTGTCTTCGGTTTCGGTTGCATCTCAGCTGTTATTC
TTGGTATAATGTCTTTAAAATCATTCTCTGATCGAATGTTGTACAATCTC
TCAATCATATGTATGATCTCTTTAGCTATAATGGAGCTCATCTTCATCTA
CATGCGATTCCAACATTCCCAAATGTATGTCAATATTGTCTTATGGATCA
TTTGGGGCACCTTATTTGCCATTGTGGTTATTATGGATGAAGTATTCCTG
GTTGGTGTTATGGCAAAGATGACCAGCTCTAAAGTACAAACATTCTCTGA
GAGCCTTCGACTCTCAATGTCACGCTTCGGAGCTTTATTAGCTTTGCTGA
CATCAGCAGCTTTGTTTGAATGGATTGAATATGTATGTGGGGTTGGAGTT
ATTGTATCGTTACTGACTTTAGTAATTTTGATTAAACGGAGAAAATCATT
GAGAGCTCCCGTGATTTGTATTAAGTAAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009448XLOC_009448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016880-exon-sc0000253-1575043694:185564..187171TCONS_00016880-exon-sc0000253-1575043694:185564..187171Clytia hemisphaericaexon
TCONS_00016880-exon-sc0000253-1575043694:184239..185323TCONS_00016880-exon-sc0000253-1575043694:184239..185323Clytia hemisphaericaexon
TCONS_00016880-exon-sc0000253-1510915933:185564..187171TCONS_00016880-exon-sc0000253-1510915933:185564..187171Clytia hemisphaericaexon
TCONS_00016880-exon-sc0000253-1510915933:184239..185323TCONS_00016880-exon-sc0000253-1510915933:184239..185323Clytia hemisphaericaexon
TCONS_00016880-exon-sc0000253-1491911889:185564..187171TCONS_00016880-exon-sc0000253-1491911889:185564..187171Clytia hemisphaericaexon
TCONS_00016880-exon-sc0000253-1491911889:184239..185323TCONS_00016880-exon-sc0000253-1491911889:184239..185323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:184239..187171 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.962054	0.636281	1.33545	2.11432	1.29984	1.20588	1.74411	1.63251	0.503157	0.642535	0	0	0	0	0	0	0	0	0	0	2.1212	2.40816	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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