TCONS_00016886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016886
Unique NameTCONS_00016886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016886 ID=TCONS_00016886|Name=TCONS_00016886|organism=Clytia hemisphaerica|type=transcript|length=1839bp
CAGCTCCCAAATTATTCTTGGGAAAGtaacaataaacaaaaaaatgaaaa
agcttttattcaaaaagacgaaagttaatgaaaatgaagaaacgAAAGAC
CAGCAATCACATTCCAGTTTCTTTATTTACAAGAATCTCGCTATTATCAC
TTTTGCTGTTTTCATCAATTTCACTGGATTTTCTGGTCTGCAGAATTTAC
AAAGTAGCTTACATCCTGAAATTGGTTTCATATGTCTTTGTATTCTCTAT
GCAGCTTTTATGGTTAGTTGTCTGTTTCTACCGAATTTGACAGTATGGAA
ACTAGGTTATAAATACACTATGGTGTTAGGGATGAATGGTTATGCTACAT
TCTCGATGGCTCAGTTTTATCCTAAGCTATGGTTAATGGCTATTAGTGCT
TGTATAGCAGGGTGTGCTTCTGCAATATTCTGGTCATCAATATCCTCGAT
GTTAACCTTATTGGCAACGCGCCACGCAAATGACACCAAAACTGACTTCG
ATTCAATCAACCAGAAATTCTTTGCTATCTTTTACTTTGGTTTTCGAATG
GCACATGTGATTGGAAATCTCATCTCATCAGTGGTGTTAACTAAAGATTC
TACTACAGACAGTGTTTCAGTAAATTTCACTCAACCAAATCTACAATGTG
GAATTCAAAACTGTCCTGGACAGCTTACCCAAAACATTAACGTTACATTA
CCTAAAACCGACCTCACCTCATCCAACGTTCAACAGCTTTTCTACATCTA
TCTCGGCACTGGTATTTTCGGCGTCATCGCTGTACTACTCACGCTATCTA
ACCTAAAAGATCAGTCACCTGTTGCtcacaaaacattaaaaagaGAGTTG
GGAGCTGTGCTTGTTTTCCTTAGAAACACAACAATTTGGAAACTAAGTGT
TTTGCCAATTGGTATTGGAATATCTCTTGGATTCGTTTATAGTGATTTGA
CAAAGGCATTTGTGACATGTGCGTTTGGTGTAAATAACGTTGGTTATTCT
ATGATGTGTTTCGGTGCCAGTTCCTGTGTCTCTTCCTTCATTATACAAAG
TATTGTTCGAAAGACTGGATCCTTTGTCATCATCCTGATTGGCTGGTTCG
TTTACATGGCAACCATTGTTTGGTTGTTCTTTTGGGAGATTAGTGAGCAG
CCATTATATGTTGTTTTTATCACAATATCTCTGCTTGGGTTTTCGGACGT
TGCTGTTTTCTCACAAATACACGggttttttggAGTCATGTTCCCAGAGA
ATAAAACAGAAGTTTTCTCAGTGTTCAAGGTCTTCAATTCATTAGGTCAA
GCTTCTTATTTTGCATATGGAAACCACCTTTGTATTCGAACCAAACTTTT
CATTGTGATTGCTTTCTACCTGGTTGGTATCTGTTTATACGCACATGTGT
ATCGTGGATTTACAAAGGATATTAAAAAGCCAAAGGATATTGAAATGGAG
CCCATAAATTCgtaaaatatttagcatatttaTGCAAGAGCAAAAGCCTC
GAtGATTTTTCGGGATTTTGTTCCAAGACCAAAAGACTGAAGTATTTACT
GTCTTTAAGCTATTCAATGCGTTCGGGACAACAATCTACTTTGCGTGTGG
AAACCACCTTTGCATTCGAACCAAACTTTTCATTGTGATCGCTCTCTACC
TGGTTGGTATTTGCTTATACGCGCACGTGTATCGTAGATATTTAAAGATG
TCAAAAGACGACTCAAGAATAAACGAAGATATCGAACTCAAACACTGATA
ATAAAGGAAACTTAATTTTCGGTACCTTTTTCTAATGTGATCTTAAATTT
TTACATCATATTTTAATTTATAGCTACCTATTTTTTAGC
Run BLAST on NCBI

transcript from alignment at sc0000253:214977..220126-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016886 ID=TCONS_00016886|Name=TCONS_00016886|organism=Clytia hemisphaerica|type=transcript|length=5150bp|location=Sequence derived from alignment at sc0000253:214977..220126- (Clytia hemisphaerica)
CAGCTCCCAAATTATTCTTGGGAAAGTAACAATAAACAAAAAAATGAAAA
AGCTTTTATTCAAAAAGACGAAAGTTAATGAAAATGAAGAAACGAAAGAC
CAGCAATCACATTCCAGTTTCTTTATTTACAAGAATCTCGCTATTATCAC
TTTTGCTGTTTTCATCAATTTCACTGGATTTTCTGGTCTGCAGAATTTAC
AAAGTAGCTTACATCCTGAAATTGGTTTCATATGTCTTTGTATTCTCTAT
GCAGCTTTTATGGTTAGTTGTCTGTTTCTACCGAATTTGACAGTATGGAA
ACTAGGTTATAAATACACTATGGTGTTAGGGATGAATGGTTATGCTACAT
TCTCGATGGCTCAGTTTTATCCTAAGCTATGGTTAATGGCTATTAGTGCT
TGTATAGCAGGTAAGATATATTCACATTTGACATCCCTATTTCAATGACA
CAGGGAAGTATATTCTATAGATCAGTGAAGATAGCATGAACAGCTGTAAT
CTCCAAACCTCTTTTACTACTGCAAGATTGCCAAAACTTCAGTGTTTTAA
CATTGGGTTAAAGAGTCCAAATTGCAATTTTTGGATTATTTGAACCCTGT
GATAATCCCTGGTAAAATATTGCTTTCCAATAACCATAGATTATAACTGA
ACTCATAGGGTGTGCTTCTGCAATATTCTGGTCATCAATATCCTCGATGT
TAACCTTATTGGCAACGCGCCACGCAAATGACACCAAAACTGACTTCGAT
TCAATCAACCAGAAATTCTTTGCTATCTTTTACTTTGGTTTTCGAATGGC
ACATGTGATTGGAAATCTCATCTCATCAGTGGTGTTAACTAAAGGTAAGT
ACGGGTAAGTACATTTGATTCTCTCCTATTCGATCTTCAAGAAATCAAAA
ATTACCCCAGATGAGAAGACAAGTACTGCAGTTCGAATCAGAGAAAAATT
TACAATTATAAATAAGGATCGAGTTAGAGACAGTTAACTGTATTTATATA
TAGGAATATGATTGCAAAGTTTTACACACACCCCTGTCTCTTTATCCCAC
TTGATGACGAAAATCCAGTTGAAAAATTGTAAAATCTGAATGTTGTCAAG
TGTTCCAAAAGTATGCACAAGAAGCTTTGTTATTTGTTTCTTCGCATACA
TTCTTCAAAATTTGTACTATTTTTCTAGTTACCAAGAGTGTGGGATCACT
TGGCTGAATATCACTTTTTTGAATAATAACACAAACACCATTTCACCCAT
AGATTCTACTACAGACAGTGTTTCAGTAAATTTCACTCAACCAAATCTAC
AATGTGGAATTCAAAACTGTCCTGGACAGCTTACCCAAAACATTAACGTT
ACATTACCTAAAACCGACCTCACCTCATCCAACGTTCAACAGCTTTTCTA
CATCTATCTCGGCACTGGTATTTTCGGCGTCATCGCTGTACTACTCACGC
TATCTAACCTAAAAGATCAGTCACCTGTTGCTCACAAAACATTAAAAAGA
GAGTTGGGAGCTGTGCTTGTTTTCCTTAGAAACACAACAATTTGGAAACT
AAGTGTTTTGCCAATTGGTATTGGAATATCTCTTGGATTCGTTTATAGTG
ATTTGACAAAGGTTGATTTATTTCCTATTAATTTTCAGATATAAACATTT
GAGAGATTTACATTTTTAGCTTTGATTTATCTTTGAGGCCCCTCAGTGGA
CCTTCAACTCATGCAGATCTTTTAAAGTGTTCACGTATTCACGCAAGATA
TTAGCTCGAGAACATAAAGATTTTTTCAGTTAGTTAGTTTTTACCCCCAC
TGGCTGAAAAGATTCTACCGGTTCTGTGAGAAGGGGATGTTATACAAACG
AACTCGTTGTCTAAAAGTACATAAGATATGGCCTAACAAAATTCATCTTT
CAGGCATTTGTGACATGTGCGTTTGGTGTAAATAACGTTGGTTATTCTAT
GATGTGTTTCGGTGCCAGTTCCTGTGTCTCTTCCTTCATTATACAAAGTA
TTGTTCGAAAGACTGGATCCTTTGTCATCATCCTGATTGGCTGGTTCGTT
TACATGGCAACCATTGTTTGGTTGTTCTTTTGGGAGATTAGTGAGCAGCC
ATTATATGTTGTTTTTATCACAATATCTCTGCTTGGGTTTTCGGACGTTG
CTGTTTTCTCACAAATACACGGTAAGAAGATTTTCACTTTTGTTTTCATA
CGTTGGCTTCTCTTGACGAGAACTTTAGGTCAAGACGCCTTATTTTTTAG
CTTATATAATGCCTATAATTCTAGCTAGTAGATTTGTGTGGTAAGCTTTA
AGAAGTAGGCTTTAAAGAGATTTGAAATCAAGAAATTAGTAACTGGTAAA
GGACTAGAAACTAGATTGCTATTACATGGGCCCCGTCAACGTCAACTCAA
AATGACTCACCGGGGCCCATGTATTAAAGGGAGCATAATCCGAGGGAATA
AAGGGCATTGGCACGATCCCGGGGGGGGGGGGACTTAGGCAAAAAAGGGG
GCTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAATT
CAGTCTCTCTAAGGGTAAGGGTCCAGAGGTCTGGCACGCACATACCCGAC
ACCCATCAATCCTAGTACCCCCCCCCGGGGGCACGATAGATCTAGTAAAT
AAGTAACTTGAAACTACTAAGGCATAGATTAGAACGAAGAGAATTGAAAT
TCAAAATTTTCCTTTTTTTCAGGGTTTTTTGGAGTCATGTTCCCAGAGAA
TAAAACAGAAGTTTTCTCAGTGTTCAAGGTCTTCAATTCATTAGGTCAAG
CTTCTTATTTTGCATATGGAAACCACCTTTGTATTCGAACCAAACTTTTC
ATTGTGATTGCTTTCTACCTGGTTGGTATCTGTTTATACGCACATGTGTA
TCGTGGATTTACAAAGGATATTAAAAAGCCAAAGGATATTGAAATGGAGC
CCATAAATTCGTAAAATATTTAGCATATTTATGCAAGAGCAAAAGCCTCG
ATGTATGTTTTTATGTTTTGCTTTATAATCATTTATGAAAATCTTGTCTC
TTTGAGACGCTTATCTCAGTGACTTTTTCTTTTCCTGGAAAAAAAATCCT
GCTTCATTTTTGGGATCTTTCCGCTGTTTTTCAGGACATGATATTATATA
TTTTTTGCTCCCTAATGCATAGAAACGTAACGGCTTGACCCGCTTAACAC
ACCCCTTTCTCACAGACCCAGTGAGATTTTATCAGCCAGTGGGGGCAAAA
ATAATAGACCAAAACTCGACGATGGGCATTGATATTCTCATGTTTTTTAT
GGCTGGGTATTAGAATTCCAATGTTTTCTAGCCAGAAAATTCAGTGGGGA
TGGTAAAAAATAGCACAATATTTTGCAGTGAGGATTTGCTGATTATTTTC
AGCGGGGGACAAACATTAGAGTAAAATTTTCAACTTTTGGGACGATATTT
TGGCTAACATTTTTCCAGTGGGAAGGGTTCCAGTGCAGTGGGTCTGTCAG
AAGGAAGTATCTTAACAGAAGTTGAAGCTACTTTTGTACCTACCCAGAGT
TATGGTTTTATTCCATTGTAAAGTGGCATGAAGAATGTCTTGCCAGAAAT
GAGAAAGTTTACCGATTTTGTGGTACCGTGCTTATCTAAAACAATAAAAA
AGTTCCCTAAACAATCAAAGACGCCAGATGACAAAAATTTGGATAATGCT
GTGTTCCTGTTACAACCACTTTGAAAAACCAAGCAGGCGATTTATCCATG
AAAGACTTCTTGCAGAGTATATTTTTTAACCGGTCAGCCTGGTTCGTCTC
TCGAATTATTCTGAAATGTTCAGTGGAAATGTTTTCATTTGATAGTTCAG
GGAACTTTTGGATTTGTTTAAAGTACAGTTGAACTTATGTAATTCAAACT
CCCATAATTCAAAAACTTACTCGAACAGATTCTTGAGAATTTGAATTACA
TGAGTTCAACAGTAAGTACGGTATAATCTGTAAATGAAATGATAAAATGA
ACCCCACTGATATAAAACGTAAACATTGTTTAGTCGGTCCCCTTTCATTT
GGATAATTTTTTTACGTGCAATTTATTTCCATTGCATAATGAAAAGGAAT
GTACATAAAAGAATGAAGTTTCCCAGCTGGCACAAAACGTCGTTTCAACG
TTTTTCTAATATTCACAACGTCCATTTAACGTTAGATTGACGTTGAAACA
ACGTTGTGTGTCAGCTGGGTTTGCAACGTTGTGCCCTAGTTAGGTATATT
CATTGTTTTCATAGGATTTTTCGGGATTTTGTTCCAAGACCAAAAGACTG
AAGTATTTACTGTCTTTAAGCTATTCAATGCGTTCGGGACAACAATCTAC
TTTGCGTGTGGAAACCACCTTTGCATTCGAACCAAACTTTTCATTGTGAT
CGCTCTCTACCTGGTTGGTATTTGCTTATACGCGCACGTGTATCGTAGAT
ATTTAAAGATGTCAAAAGACGACTCAAGAATAAACGAAGATATCGAACTC
AAACACTGATAATAAAGGAAACTTAATTTTCGGTACCTTTTTCTAATGTG
ATCTTAAATTTTTACATCATATTTTAATTTATAGCTACCTATTTTTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009450XLOC_009450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016886-exon-sc0000253-1575043694:219717..220126TCONS_00016886-exon-sc0000253-1575043694:219717..220126Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1575043694:219283..219468TCONS_00016886-exon-sc0000253-1575043694:219283..219468Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1575043694:218516..218874TCONS_00016886-exon-sc0000253-1575043694:218516..218874Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1575043694:217956..218223TCONS_00016886-exon-sc0000253-1575043694:217956..218223Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1575043694:216575..216854TCONS_00016886-exon-sc0000253-1575043694:216575..216854Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1575043694:214977..215312TCONS_00016886-exon-sc0000253-1575043694:214977..215312Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1510915933:219717..220126TCONS_00016886-exon-sc0000253-1510915933:219717..220126Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1510915933:219283..219468TCONS_00016886-exon-sc0000253-1510915933:219283..219468Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1510915933:218516..218874TCONS_00016886-exon-sc0000253-1510915933:218516..218874Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1510915933:217956..218223TCONS_00016886-exon-sc0000253-1510915933:217956..218223Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1510915933:216575..216854TCONS_00016886-exon-sc0000253-1510915933:216575..216854Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1510915933:214977..215312TCONS_00016886-exon-sc0000253-1510915933:214977..215312Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1491911889:219717..220126TCONS_00016886-exon-sc0000253-1491911889:219717..220126Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1491911889:219283..219468TCONS_00016886-exon-sc0000253-1491911889:219283..219468Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1491911889:218516..218874TCONS_00016886-exon-sc0000253-1491911889:218516..218874Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1491911889:217956..218223TCONS_00016886-exon-sc0000253-1491911889:217956..218223Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1491911889:216575..216854TCONS_00016886-exon-sc0000253-1491911889:216575..216854Clytia hemisphaericaexon
TCONS_00016886-exon-sc0000253-1491911889:214977..215312TCONS_00016886-exon-sc0000253-1491911889:214977..215312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:214977..220126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633531	0.617793	6.45585	8.42139	0	1.04374	2.44351	4.57518	2.66253	2.64511	1.92469	2.10964	4.21342	3.50054	2.15844	1.15817	0.475589	0	5.3877	1.40945	1.22507	0	2.90558	0	3.93683	3.03529	0	1.85419	6.32853	2.86568
Blast
[Close]
BLAST of TCONS_00016886 vs. Swiss-Prot (Human)
Match: UN93A (Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.394e-50
Identity = 129/445 (28.99%), Postives = 228/445 (51.24%), Query Frame = 2 
Query:  131 KNLAIITFAVFINFTGFSGLQNLQSSLHPE--IGFICLCILYAAFMVSCLFLPNLTVWKLGYKYTMVLGMNGYATFSMAQFYPKLWLMXXXXXXXXXXXXXFWSSISSMLTLLATRHANDT-KTDFDSINQKFFAIFYFGFRMAHVIGNLISSVVLTKDSTTDSVSVNFTQPNLQ---CGIQNCPGQLTQNINVTLPKTDLTSSNVQQLFYIYLGTGIFGVIAVLLTLSNLKD---QSPVAHKTLK--RELGAVLVFLRNTTIWKLSVLPIGIGISLGFVYSDLTKAFVTCAFGVNNVGYSMMCFGASSCVSSFIIQSIVRKTGSFVIILIGWFVYMATIVWLFFWEISEQPLYVVFITISLLGFSDVAVFSQIHGFFGVMFPENKTEVFSVFKVFNSLGQASYFAYGNHLCIRTKLFIVIAFYLVGICLYAHVYRGFTKDIKKP 1432
            +N+ +++F   + FT + GLQ+LQSSL+ E  +G   L  LY   ++S +FLP L + +LG K T++L M GY  FS+  F+   + +  ++ + G  +A  WS+  + LT+    HA    K   D +NQ +F IF+  F+ + V GNLISS+V  +  + +++      P  Q   CG  +C    T   +   P   L    V  L  IY G+G+  V+ +   L  ++D   +S    K++     L +     R+  +  L +LP+  G+  GF+ S+ T+++VTC  G+  VGY M+CF A+  + S +   + + TG  V+ ++G   +++ ++ L  W      L V F+   L G +D    +Q +  +GV+F ++K   F+ ++++ +LG    F Y   LC+  KL+I++    + +  Y  V    +K+  +P
Sbjct:    6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEKAGKRGKDMVNQ-YFGIFFLIFQSSGVWGNLISSLVFGQTPSQETL------PEEQLTSCGASDCLMATTTTNSTQRPSQQL----VYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSLTMVAYGLVECVESKNPIRP 439
The following BLAST results are available for this feature:
BLAST of TCONS_00016886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UN93A2.394e-5028.99Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A... [more]
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