TCONS_00016899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016899
Unique NameTCONS_00016899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016899 ID=TCONS_00016899|Name=TCONS_00016899|organism=Clytia hemisphaerica|type=transcript|length=306bp
cctcaaaacacctatcCCAGTCAACCATGTCTACCGCCCTTCGTATTAGA
ACGGGATCTGCTCTGGAGAAGTCCCAAACCTTTCGTTCATAAGATGGAGC
GTAGGGGATTTTAAAGTTTAGCTTGCAAAAGGTTATTTGGTGATGGCACT
TAGGGTGCAAAGATGGGAGGATACCAGTATCCAGAATCAAATGATCTGCT
GATGAAGAAATTAGATCAATGCAAGAAGTTGAATTATCAAGGAGATGAGT
AGGCCCATCAATTAATTGTTTCAGACCATGCTGGGTAGCTAGATTTTGAA
TTTCTC
Run BLAST on NCBI

transcript from alignment at sc0000253:137997..138302

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016899 ID=TCONS_00016899|Name=TCONS_00016899|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0000253:137997..138302 (Clytia hemisphaerica)
GAGAAATTCAAAATCTAGCTACCCAGCATGGTCTGAAACAATTAATTGAT
GGGCCTACTCATCTCCTTGATAATTCAACTTCTTGCATTGATCTAATTTC
TTCATCAGCAGATCATTTGATTCTGGATACTGGTATCCTCCCATCTTTGC
ACCCTAAGTGCCATCACCAAATAACCTTTTGCAAGCTAAACTTTAAAATC
CCCTACGCTCCATCTTATGAACGAAAGGTTTGGGACTTCTCCAGAGCAGA
TCCCGTTCTAATACGAAGGGCGGTAGACATGGTTGACTGGgataggtgtt
ttgagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009460XLOC_009460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016899-exon-sc0000253-1491911889:137997..138302TCONS_00016899-exon-sc0000253-1491911889:137997..138302Clytia hemisphaericaexon
TCONS_00016899-exon-sc0000253-1510915933:137997..138302TCONS_00016899-exon-sc0000253-1510915933:137997..138302Clytia hemisphaericaexon
TCONS_00016899-exon-sc0000253-1575043694:137997..138302TCONS_00016899-exon-sc0000253-1575043694:137997..138302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:137997..138302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.872942	0.968598	2.94062	1.38285	1.72361	3.46048	5.49004	4.3073	2.49049	1.11163	6.64679	3.1581	2.13267	4.56072	1.89886	2.16142	1.77216	0.95503	2.03032	3.04709	1.93184	1.72958	0.610262	0	0.501498	2.10133	2.51658	2.44018	1.00291	1.0624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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