TCONS_00016905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016905
Unique NameTCONS_00016905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016905 ID=TCONS_00016905|Name=TCONS_00016905|organism=Clytia hemisphaerica|type=transcript|length=789bp
gccagtgggggcAAAAATAATAGACCAAAACTCGACGATGGGCATTGATA
TtctcatgttttttatggctgggtaTTAGAATTCCAatgttttctagcca
gaaaattcagtggggatggtaaaaaatagcacaatattttgcagtgagga
tttgctgattattttcagcgggggaCAAACAttagagtaaaattttcaac
ttttgggacgatattttggctaacatttttccagtgggaagggttccagT
GCAGTGGGTCTGTCAGAAGGAAGTATCTTAACAGAAGTTGAAGCTACTTT
TGTACCTACCCAGAGTTATGGTTTTATTCCATTGTAAAGTGGCATGAAGA
ATGTCTTGCCAGAAATGAGAAAGTTTACCGATTTTGTGGTACCGTGCTTa
tctaaaacaataaaaaagttcCCTAAACAATCAAAGACGCCAGATGACAA
AAATTTGGATAATGCTGTGTTCCTGTTACAACCACTTTGAAAAACCAAGC
AGGCGATTTATCCATGAAAGACTTCTTGCAGAGTATATTTTTTAACCGGT
CAGCCTGGTTCGTCTCTCGAATTATTCTGAAATGTTCAGtggaaatgttt
tcatttgataGTTCAGGGAACTTTTGGATTTGTTTAAAGTACAGTTGAAC
TTATGTAATTCAAACTCCCATAATTCAAAAACTTACTCGAACAGATTCTT
GAGAATTtgaattacatgagttcaacAGTAAGTACGGTATAATCTGTAAA
TGAAATGATAAAATGAACCCCACTGATATAAAACGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000253:215554..216342

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016905 ID=TCONS_00016905|Name=TCONS_00016905|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at sc0000253:215554..216342 (Clytia hemisphaerica)
TTTACGTTTTATATCAGTGGGGTTCATTTTATCATTTCATTTACAGATTA
TACCGTACTTACTgttgaactcatgtaattcaAATTCTCAAGAATCTGTT
CGAGTAAGTTTTTGAATTATGGGAGTTTGAATTACATAAGTTCAACTGTA
CTTTAAACAAATCCAAAAGTTCCCTGAACtatcaaatgaaaacatttcca
CTGAACATTTCAGAATAATTCGAGAGACGAACCAGGCTGACCGGTTAAAA
AATATACTCTGCAAGAAGTCTTTCATGGATAAATCGCCTGCTTGGTTTTT
CAAAGTGGTTGTAACAGGAACACAGCATTATCCAAATTTTTGTCATCTGG
CGTCTTTGATTGTTTAGGgaacttttttattgttttagatAAGCACGGTA
CCACAAAATCGGTAAACTTTCTCATTTCTGGCAAGACATTCTTCATGCCA
CTTTACAATGGAATAAAACCATAACTCTGGGTAGGTACAAAAGTAGCTTC
AACTTCTGTTAAGATACTTCCTTCTGACAGACCCACTGCActggaaccct
tcccactggaaaaatgttagccaaaatatcgtcccaaaagttgaaaattt
tactctaaTGTTTGtcccccgctgaaaataatcagcaaatcctcactgca
aaatattgtgctattttttaccatccccactgaattttctggctagaaaa
catTGGAATTCTAAtacccagccataaaaaacatgagaATATCAATGCCC
ATCGTCGAGTTTTGGTCTATTATTTTTgcccccactggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009466XLOC_009466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016905-exon-sc0000253-1491911889:215554..216342TCONS_00016905-exon-sc0000253-1491911889:215554..216342Clytia hemisphaericaexon
TCONS_00016905-exon-sc0000253-1510915933:215554..216342TCONS_00016905-exon-sc0000253-1510915933:215554..216342Clytia hemisphaericaexon
TCONS_00016905-exon-sc0000253-1575043694:215554..216342TCONS_00016905-exon-sc0000253-1575043694:215554..216342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:215554..216342 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.42818	0.417543	0.415549	0.948616	0.247468	0.195552	0.86506	0.883482	0.515455	0.638475	0.123944	0.122214	0.610219	0.549223	0.243135	0.149097	0	0.188262	0.975352	0.748466	1.36025	0.951951	0.280538	0.828913	0.394044	0	0.587119	0.478233	0.543138	0.760887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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