TCONS_00016940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016940
Unique NameTCONS_00016940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016940 ID=TCONS_00016940|Name=TCONS_00016940|organism=Clytia hemisphaerica|type=transcript|length=1103bp
TTTTAAGAAAtcatatttgaaaaaatgaaacattgaTGGTGAATGATAAA
AGTATTAGTTTCCCAATGAGCGACACAGACAATGAAGATGATGAAAGCCT
TATGGCTTCAGGTAGAAGTAGTTCTTTGAACTCTCTTTCTCAACCTCTAC
TCAGCTCTGATGAATCCGAGAGGAACAAGAAACCCAGAAGACATGTACTC
AGTGATAGATTATTTGCTGAACGCAATAAAAAGCTTGCTAAATTTTGTGT
TATGTTGACTGTTACTTTAGAAAGAACTGCATATTATGGATTGTTGGGCA
ACTTGGCATATTTTACCAATGTCTATTTGGATTATACAGCAGATGAGAGT
GTGAATGTTACACTTGGTTTTTCTGGATTGACATGGATCAGTTGTTTTAT
TGGTGGTATATTAGGAGATTCATTATTAGGTCGATTCAATACAATTATCA
CTGGATTGATAATTTATATTGTTGGTTATGCGAACATGAGCTATATTGCA
CATATTATGAATCACGAAatagatgatgatgattttgataGAGGACGGCA
GAAATTGTTTGTCGGTTGGTTTTTAGGATCCCTTTTCCTAATCTCATTGG
GAGAAGGTTGTTTCAAATCGAACATGTCACCCTTTGGGGCTGATCAAATT
GACTCCAATTCAGACAATTCTGAATTGAGATcattttttaattactttta
ttgGGCAATTAACATAGGAAGTTTAATGGGTTTTTCATTGATTGTTTGGA
TTCAGATTCACTTTGGATTTTGTACTGGTTATGTCGTGCCATTGAGTTTA
CTTGGACTTGGTGCCTTGATTTTTATTGTTCCACGACAAAGGAATTATCA
TATTTTGTTACCAAAGAAAAATGTGATAATGATCATCAAAATCTTGTGGA
ATGCTCTTACTGGGAAAAGGCCTCACAGCGCATATGAAGAATATAATCCT
ATGGACGGGAGATTGGATCGAGCAAAGATTAAGTATGGCGGCAAATTTTT
GGACAGTGATGTTGATGACGTTAAAGTGTTGGTGTCTTTGTTTCCAACAC
TTCTTTTCCTAATCATCTATTGCAGTTGCTATTACCAGgTCAATGGTTTA
TTC
Run BLAST on NCBI

transcript from alignment at sc0000255:33569..36463+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016940 ID=TCONS_00016940|Name=TCONS_00016940|organism=Clytia hemisphaerica|type=transcript|length=2895bp|location=Sequence derived from alignment at sc0000255:33569..36463+ (Clytia hemisphaerica)
TTTTAAGAAAtcatatttgaaaaaatgaaacattgaTGGTGAATGATAAA
AGTATTAGTTTCCCAATGAGCGACACAGACAATGAAGATGATGAAAGCCT
TATGGCTTCAGGTAGAAGTAGTTCTTTGAACTCTCTTTCTCAACCTCTAC
TCAGCTCTGATGAATCCGAGAGGAACAAGAAACCCAGAAGACATGTACTC
AGTGATAGATTATTTGCTGAACGCAATAAAAAGCTTGCTAAATTTTGTGT
TATGTTGACTGTTACTTTAGAAAGAACTGCATATTATGGATTGTTGGGCA
ACTTGGCATATTTTACCAATGTCTATTTGGATTATACAGCAGATGAGAGT
GTGAATGTTACACTTGGTTTTTCTGGATTGACATGGATCAGTTGTTTTAT
TGGTGGTATATTAGGAGATTCATTATTAGGTCGATTCAATACAATTATCA
CTGGATTGATAATTTATATTGTTGGTTATGCGAACATGAGCTATATTGCA
CATATTATGAATCACGAAatagatgatgatgattttgataGAGGACGGCA
GAAATTGTTTGTCGGTTGGTTTTTAGGATCCCTTTTCCTAATCTCATTGG
GAGAAGGTTGTTTCAAATCGAACATGTCACCCTTTGGGGCTGATCAAATT
GACTCCAATTCAGACAATTCTGAATTGAGATcattttttaattactttta
ttgGGCAATTAACATAGGAAGTTTAATGGGTTTTTCATTGATTGTTTGGA
TTCAGATTCACTTTGGATTTTGTACTGGTTATGTCGTGCCATTGAGTTTA
CTTGGACTTGGTGCCTTGATTTTTATTGTTCCACGACAAAGGAATTATCA
TATTTTGTTACCAAAGAAAAATGTGATAATGATCATCAAAATCTTGTGGA
ATGCTCTTACTGGGAAAAGGTAAGATTGGTGTTAGCTGTTAGCTTATAAA
ATTATGCATTACTAGTCAACCCACCCTTGAATCAGATTCTGAAAATACTT
TCGTTATTTGAGTTTTTTAAAGTGTCTCAGAAGAGATGATAGGAAGATTT
ATTTGAGGAATTACTCACGGATGTTAAAAACTCGAAACTAAGCTTCGAAG
CTGGTCTTTTTTAGCAAAATTAACTTTGCTTCTAATAGGCCTCACAGCGC
ATATGAAGAATATAATCCTATGGACGGGAGATTGGATCGAGCAAAGATTA
AGTATGGCGGCAAATTTTTGGACAGTGATGTTGATGACGTTAAAGTGTTG
GTGTCTTTGTTTCCAACACTTCTTTTCCTAATCATCTATTGCAGTTGCTA
TTACCAGGTGAGATTTCTTACATTACgtttattcaattttatttttacgc
TTTGATCTTTCATAATCTTTTTGATTTGtaatcctgaaaatgttcttaat
ttgttcttattttaaccattctgtgagtatttttgtcttatgctcttata
tagtttgttcttttaacATAACCTAAAGTCGTTGATTTTAGTCATCTTGA
TGGCTAGATCTTTCACTAACTTCTTAGAAGTCGAAAAGAACTAGTTTATT
AGCACATCCCGGATAAACAGTTGCTCTTAGATTAATTCAATAATGACCCT
ATTTTGAAATTGGTTTAAAATAGCATTCTAATTCAAAACGtcagtttttg
gacctacctggaggtcctttaaattaacctgtgttcgtccgtccgtccgt
ccgtccgtccgtccgtctgttaccaacttttctcgggattgaatcataag
atttttttgatttttggtacaaaggtgcaaaatggtagtgggcaaaatgt
gacggagcccgattttcgagaaaaaaaaatttgggggcaaatttgggcca
aaaaacggctaaaaaatgggttttttggactttgtgaaaaattggatcat
taattttttctgaatttttgcatgaaactagggtaccatcataggtaaaa
gattgctcaagcagatttttgcaaaaaaattttgttggctaaaaaaacgc
atgtttatctataAGAATCActtttaataagcatacatcaatgttcttag
tcaaattactcaatttttttatgagatagatgtttttttttgctcatgag
ggcttacttttgaaggatatgtgtgtttagacatgaaattttggttgctt
ggcgtgtttttataNgatagatgttttttttttgctcatgagggcttact
tttgaaggatatgtgtgtttagacatgaaattttggttgggttgcttggc
gtgtttttataaaaaactggccaaattcaattttttttataagcacatta
tcaattacttagttattggcttttctcgagattggctcttttattcttta
tgattttttgcacaaagatacataactataaaccctcgaatgtgacggag
ctcgattttgggaaaaaaaaaatttggggtaaatttcagctaaaaaacag
cCAATAaggggttttttggactttgtgaaatattggatcattgttttttt
tctgattttttgcatgaaagtaggtaaaagatggctcaagcagattttag
taaaaaaagaatttttcggctcaaaaaacgcatgtttatctataagaatc
actattaataagcatacatcaatgttcttagccaaattactaaatttttt
tatgagatagatgtttgtttttgctcacgaagtcttaaatatgaaagaat
atttcaagagcatgaaatttcgGTTTctaaacgcttttttataagaaaca
aacgactaattttaatagatcgtcactatttgtgttctgaatgattgttt
aatggtcacgtcacgtacatattaattataaatgtgttaaatgcataacc
aggtaggtccataaaagtatcacttgttaggTCAATGGTTTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009491XLOC_009491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016940-exon-sc0000255-1491911889:33569..34487TCONS_00016940-exon-sc0000255-1491911889:33569..34487Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1510915933:33569..34487TCONS_00016940-exon-sc0000255-1510915933:33569..34487Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1575043694:33569..34487TCONS_00016940-exon-sc0000255-1575043694:33569..34487Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1491911889:34707..34875TCONS_00016940-exon-sc0000255-1491911889:34707..34875Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1510915933:34707..34875TCONS_00016940-exon-sc0000255-1510915933:34707..34875Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1575043694:34707..34875TCONS_00016940-exon-sc0000255-1575043694:34707..34875Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1491911889:36449..36463TCONS_00016940-exon-sc0000255-1491911889:36449..36463Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1510915933:36449..36463TCONS_00016940-exon-sc0000255-1510915933:36449..36463Clytia hemisphaericaexon
TCONS_00016940-exon-sc0000255-1575043694:36449..36463TCONS_00016940-exon-sc0000255-1575043694:36449..36463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:33569..36463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23802	2.37429	1.332	1.89698	1.79221	1.39926	2.72315	2.89337	2.62221	0.907615	3.46099	1.62721	2.21368	1.39861	3.20387	2.5165	3.17426	2.32974	1.86085	4.2806	4.36807	3.60765	1.66412	4.70178	4.02064	6.3539	2.48548	1.52931	2.02329	1.39181
Blast
[Close]
BLAST of TCONS_00016940 vs. Swiss-Prot (Human)
Match: S15A1 (Solute carrier family 15 member 1 OS=Homo sapiens GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.375e-17
Identity = 75/265 (28.30%), Postives = 132/265 (49.81%), Query Frame = 3 
Query:  234 LAKFCVMLTVTLERTAYYGLLGNLA-YFTNVYLDYTADESVNVTLGFSGLTWISCFIGGILGDSLLGRFNTIITGLIIYIVGYANMSYIAHIMNHEIDDDDFDRGRQKLFVGWFLG--SLFLISLGEGCFKSNMSPFGADQIDSNSDNSELRSFFNYFYWAINIGSLMGFSLIVWIQIHFGFC----------TGYVVPLSLLGLGALIFIVPRQRNYHILLPKKNVI-MIIKILWNALTGKRPHSAYEEYNPMDGRLDRAKIKY 986
            L+ F +++    ER +YYG+   L  YFTN ++ +  + S  +   F  L +++  +G ++ DS LG+F TI++  I+Y +G A ++ ++ I  +++ D + D     L V   L    L LI+LG G  K  +S FG DQ +   +    R FF+ FY AIN GSL+  S I+   +    C            + VP +L+ +  ++F++     Y    P+ N++  + K +  A+  +  H + + +   +  LD AK KY
Sbjct:   14 LSIFFIVVNEFCERFSYYGMRAILILYFTN-FISWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQA-VTSVSSI--NDLTDHNHDGTPDSLPVHVVLSLIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQRNR-FFSIFYLAINAGSLL--STIITPMLRVQQCGIHSKQACYPLAFGVPAALMAVALIVFVLGSGM-YKKFKPQGNIMGKVAKCIGFAIKNRFRHRS-KAFPKREHWLDWAKEKY 269
The following BLAST results are available for this feature:
BLAST of TCONS_00016940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S15A16.375e-1728.30Solute carrier family 15 member 1 OS=Homo sapiens ... [more]
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