TCONS_00016995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016995
Unique NameTCONS_00016995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016995 ID=TCONS_00016995|Name=TCONS_00016995|organism=Clytia hemisphaerica|type=transcript|length=314bp
tagggGTCAGTCATCAAGTGATTCAAATCGGGCATTTCGTTCATCCTATG
CAAAATTGATTGAGTTGAGAAGTCTTTTgccacaaaaaacaaaattcatg
CTTTTCACAGCCACTGCTACAAGATCAactcaaagcaaaatttttgcaAT
GCTTGATCTTTCATTAGAGGAAGTTTATTCTGAAATCCACCATCCtaata
aaaacaacatcagGTATAAAATCTTTGCTATTGAAATAAAAACAGATACA
ATTAAATCAACAAATAAGCTGCTACATTTTGTCTGTATTTTGTAGGAAGA
AAGATTTGTATGGT
Run BLAST on NCBI

transcript from alignment at sc0000255:264991..265304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016995 ID=TCONS_00016995|Name=TCONS_00016995|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0000255:264991..265304 (Clytia hemisphaerica)
ACCATACAAATCTTTCTTCCTACAAAATACAGACAAAATGTAGCAGCTTA
TTTGTTGATTTAATTGTATCTGTTTTTATTTCAATAGCAAAGATTTTATA
CctgatgttgtttttattaGGATGGTGGATTTCAGAATAAACTTCCTCTA
ATGAAAGATCAAGCATtgcaaaaattttgctttgagtTGATCTTGTAGCA
GTGGCTGTGAAAAGcatgaattttgttttttgtggcAAAAGACTTCTCAA
CTCAATCAATTTTGCATAGGATGAACGAAATGCCCGATTTGAATCACTTG
ATGACTGACcccta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009517XLOC_009517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016995-exon-sc0000255-1491911889:264991..265304TCONS_00016995-exon-sc0000255-1491911889:264991..265304Clytia hemisphaericaexon
TCONS_00016995-exon-sc0000255-1510915933:264991..265304TCONS_00016995-exon-sc0000255-1510915933:264991..265304Clytia hemisphaericaexon
TCONS_00016995-exon-sc0000255-1575043694:264991..265304TCONS_00016995-exon-sc0000255-1575043694:264991..265304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:264991..265304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.675588	0.988207	0.382468	0	1.3666	0	0	0	0.569305	0	0	0	0.449312	0	0.383621	0.823369	0.253581	0	0	0	0.979795	0.47791	1.16192	1.05636	1.81337	0	0	0.988642	0.74985	0.381989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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