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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016997 ID=TCONS_00016997|Name=TCONS_00016997|organism=Clytia hemisphaerica|type=transcript|length=967bp
gtgatgatgggtccgaagaattaacgaaaatttggacacgcatcaATTTA
CCCGAGGAGTGAAGAGTCTAGGTTACACCTTATTGACCTTTTAAAAGCCC
CACACTGCCAACGAGACCATGGCAGATGGATGCGCAAAGGACGAGTTGAG
AATTTCCAACTCTCCGGAAGAAGAAAAATTGGACTTTACACACAATCGAG
TGCCAATGTTCACCTTCAACACGATCAAGAAGGGGGAATCATTTCTTCAT
TTAAAACCATACAAGCAGCAGATAAGGGGAACTCTAACAAACGAGCTGAA
GATCACTATTCCTGATTCGCAATCTGCACAAGAAAAGGGTTTTCAATGTC
AATATTGCTCAAGAAGCTTTTCTACTAAAACTGGTCGAACAAATCATGAA
AATGCCCACGCACGAAAAAATCGAGAAGAATCNGGCTCAATATTGCTCAA
GAAGCTTTTCTACTAAAACTGGTCGAACAAATCATGAAAATGCCCACGCA
CGAAAAAATCGAGAAGAATCTCCTGCATTGGTGCCAACCGCAGAAGTTAC
GTCAATTAGTGTTGAACGAAACCTGACGTCACATACTCCAATCGAACAAG
AAGAAGTCCCTGTCTGGGGCAAGCTGTCAAAGCAAAATCTCTGTCAAATT
GCTGATTCGATGTACAAAGAAATCATGTACTTTCGTAAAAATCTATTCCT
TGTACCATCTGGAAAAGCGGAGAAAGAGTACATAGAAGAAATAGACGAGA
CTGATCAACTTCTGGAACAATCAATCTGATGATTTCTCAGCGTCATCAAT
GAAACTCCTGATGTGTATGCCATCAATACTCCTCCAAAAGACTCACGCAC
GATCCAAAGCTAGAGAACACTCAGAAACGCTAGCTAGGAGATTGAACATC
TGGAAAGAAGGAGACTTTGATAAATTGTTGAGGGAAACAAGAGAAATACA
GAAACGTCTTCCCCGAG Run BLAST on NCBI protein sequence of TCONS_00016997-protein >TCONS_00016997-protein ID=TCONS_00016997-protein|Name=TCONS_00016997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MKMPTHEKIEKNXAQYCSRSFSTKTGRTNHENAHARKNREESPALVPTAE
VTSISVERNLTSHTPIEQEEVPVWGKLSKQNLCQIADSMYKEIMYFRKNL
FLVPSGKAEKEYIEEIDETDQLLEQSI Run BLAST on NCBI transcript from alignment at sc0000255:294657..295623 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016997 ID=TCONS_00016997|Name=TCONS_00016997|organism=Clytia hemisphaerica|type=transcript|length=967bp|location=Sequence derived from alignment at sc0000255:294657..295623 (Clytia hemisphaerica)
CTCGGGGAAGACGTTTCTGTATTTCTCTTGTTTCCCTCAACAATTTATCA
AAGTCTCCTTCTTTCCAGATGTTCAATCTCCTAGCTAGCGTTTCTGAGTG
TTCTCTAGCTTTGGATCGTGCGTGAGTCTTTTGGAGGAGTATTGATGGCA
TACACATCAGGAGTTTCATTGATGACGCTGAGAAATCATCAGATTGATTG
TTCCAGAAGTTGATCAGTCTCGTCTATTTCTTCTATGTACTCTTTCTCCG
CTTTTCCAGATGGTACAAGGAATAGATTTTTACGAAAGTACATGATTTCT
TTGTACATCGAATCAGCAATTTGACAGAGATTTTGCTTTGACAGCTTGCC
CCAGACAGGGACTTCTTCTTGTTCGATTGGAGTATGTGACGTCAGGTTTC
GTTCAACACTAATTGACGTAACTTCTGCGGTTGGCACCAATGCAGGAGAT
TCTTCTCGATTTTTTCGTGCGTGGGCATTTTCATGATTTGTTCGACCAGT
TTTAGTAGAAAAGCTTCTTGAGCAATATTGAGCCNGATTCTTCTCGATTT
TTTCGTGCGTGGGCATTTTCATGATTTGTTCGACCAGTTTTAGTAGAAAA
GCTTCTTGAGCAATATTGACATTGAAAACCCTTTTCTTGTGCAGATTGCG
AATCAGGAATAGTGATCTTCAGCTCGTTTGTTAGAGTTCCCCTTATCTGC
TGCTTGTATGGTTTTAAATGAAGAAATGATTCCCCCTTCTTGATCGTGTT
GAAGGTGAACATTGGCACTCGATTGTGTGTAAAGTCCAATTTTTCTTCTT
CCGGAGAGTTGGAAATTCTCAACTCGTCCTTTGCGCATCCATCTGCCATG
GTCTCGTTGGCAGTGTGGGGCTTTTAAAAGGTCAATAAGGTGTAACCTAG
ACTCTTCACTCCTCGGGTAAATtgatgcgtgtccaaattttcgttaattc
ttcggacccatcatcac Coding sequence (CDS) from alignment at sc0000255:294657..295623 >TCONS_00016997 ID=TCONS_00016997|Name=TCONS_00016997|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000255:294657..295623 (Clytia hemisphaerica)
TCAGATTGATTGTTCCAGAAGTTGATCAGTCTCGTCTATTTCTTCTATGT
ACTCTTTCTCCGCTTTTCCAGATGGTACAAGGAATAGATTTTTACGAAAG
TACATGATTTCTTTGTACATCGAATCAGCAATTTGACAGAGATTTTGCTT
TGACAGCTTGCCCCAGACAGGGACTTCTTCTTGTTCGATTGGAGTATGTG
ACGTCAGGTTTCGTTCAACACTAATTGACGTAACTTCTGCGGTTGGCACC
AATGCAGGAGATTCTTCTCGATTTTTTCGTGCGTGGGCATTTTCATGATT
TGTTCGACCAGTTTTAGTAGAAAAGCTTCTTGAGCAATATTGAGCCNGAT
TCTTCTCGATTTTTTCGTGCGTGGGCATTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016997-exon-sc0000255-1491911889:294657..295623 | TCONS_00016997-exon-sc0000255-1491911889:294657..295623 | Clytia hemisphaerica | exon |
| TCONS_00016997-exon-sc0000255-1510915933:294657..295623 | TCONS_00016997-exon-sc0000255-1510915933:294657..295623 | Clytia hemisphaerica | exon |
| TCONS_00016997-exon-sc0000255-1575043694:294657..295623 | TCONS_00016997-exon-sc0000255-1575043694:294657..295623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:294657..295623 . |
Blast
The following BLAST results are available for this feature:
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