TCONS_00017004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017004
Unique NameTCONS_00017004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017004 ID=TCONS_00017004|Name=TCONS_00017004|organism=Clytia hemisphaerica|type=transcript|length=388bp
TCAATATCAATATCTTTctttacaaacaaacaaagggCGAATGAATCTCC
AATCCTTTCTCGCTTCATTACACAATTTGCATAAATTTCAGGGGAATCGT
TAACCAGTCGTCCATATGAAGAAGACATTGTTGCATCAATACTTAGAGTA
AAATTAGAGTAAAAATGACATAacacataaaatataaaattgtatTAAAG
AAAACACGAGAATGCAATTGGACTTTCAAGAAAAAAGTCGAATCTCTTGG
TTGAGGATATCAATTATTCAGGTGGTTAAATGCGTCTTTGATTAAGTATA
GATAACATCTTAGGGGCCAAACATCTAATACAAGGTGGCTATCCAGGGAG
TGAAGTATATTAAAGCTATCCAAAAGAATATAATATAA
Run BLAST on NCBI

transcript from alignment at sc0000255:396662..397049

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017004 ID=TCONS_00017004|Name=TCONS_00017004|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at sc0000255:396662..397049 (Clytia hemisphaerica)
TTATATTATATTCTTTTGGATAGCTTTAATATACTTCACTCCCTGGATAG
CCACCTTGTATTAGATGTTTGGCCCCTAAGATGTTATCTATACTTAATCA
AAGACGCATTTAACCACCTGAATAATTGATATCCTCAACCAAGAGATTCG
ACTTTTTTCTTGAAAGTCCAATTGCATTCTCGTGTTTTCTTTAatacaat
tttatattttatgtgtTATGTCATTTTTACTCTAATTTTACTCTAAGTAT
TGATGCAACAATGTCTTCTTCATATGGACGACTGGTTAACGATTCCCCTG
AAATTTATGCAAATTGTGTAATGAAGCGAGAAAGGATTGGAGATTCATTC
GccctttgtttgtttgtaaagAAAGATATTGATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009526XLOC_009526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017004-exon-sc0000255-1491911889:396662..397049TCONS_00017004-exon-sc0000255-1491911889:396662..397049Clytia hemisphaericaexon
TCONS_00017004-exon-sc0000255-1510915933:396662..397049TCONS_00017004-exon-sc0000255-1510915933:396662..397049Clytia hemisphaericaexon
TCONS_00017004-exon-sc0000255-1575043694:396662..397049TCONS_00017004-exon-sc0000255-1575043694:396662..397049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:396662..397049 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.278721	0	0.499618	0.42596	0.730198	0.903634	1.00431	2.02946	1.63626	0.373993	0	0.678363	2.33259	0.835488	1.70904	0	1.92263	2.97217	2.32914	0.878908	0.538164	0	0	2.49883	3.40441	4.31222	3.17506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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