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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017020 ID=TCONS_00017020|Name=TCONS_00017020|organism=Clytia hemisphaerica|type=transcript|length=300bp
AACCCCCCTGATGAGAATCATTATCATGTCGCAAAATTACTTGCGAAATA
GAGAAAACAACAGCATTACTCACAAAATCATCGTAGCCAAATGGGATGGA
CAGAAAATTCATGAGTTAGTGTTCCAGGGTGAAACGCTGACGTTTGTTGc
ccCGTTTCAGCcaatcgattttcgccagacagtctcagtgaaaaagcacc
cagagtggctgcgtttagaccaactgacatttgtaatttggcatttgctc
atgagggattcgattttaatagcttttccattgtattttctgtcatggca Run BLAST on NCBI transcript from alignment at sc0000257:20684..22711+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017020 ID=TCONS_00017020|Name=TCONS_00017020|organism=Clytia hemisphaerica|type=transcript|length=2028bp|location=Sequence derived from alignment at sc0000257:20684..22711+ (Clytia hemisphaerica)
AACCCCCCTGATGAGAATCATTATCATGTCGCAAAATTACTTGCGAAATA
GAGAAAACAACAGCATTACTCACAAAATCATCGTGTAAGTTTTACAATAA
AAGATAATTAGCAGTAAGCAATAAATTATAGTTTCTCAACGCGAGTTTGA
AGGTACGCTATAatcaattttgatgatatttGCAGGTGAATTAGAAGTCC
ATCCTTGACTAGGGGGACGGGGTATAGAATGTTTAAAAGAGATTTGATTT
AATTTCATCTCTACATGTTCGAACCTTTTACGGGCCTTTTACCTGTTTAT
TACATTAAAAATCCAATCCATTATATCATTTGCAAGATAAAAgattgaaa
atagaaatgtcatTTTTGACAATAATTCAGCCTTTTATGCGAGTGTTTTT
CCACCGAAAGTTAGTTTAGACGTCAATCATTGAAATGTGCGTTAGgaata
tttttaattatcgCACCAACTAAGCAGTCGTAAATTTGCATATTTTTGAT
TAGTAAAACTGGTCATTCATACACTGTATTTTGTATAAAGTTTTTCGTTA
CGAAAAAACGGTAATTAGAAGGGTGTTTTACTAAGAatactaattttcaa
aaattgtttcctTTCTTCTAAATGATTAAATGGAAACTATCAATATATTT
CGGATCCCAAATTGTTCGAAAGTATGAGATTTTCAtcgccaaagaaattt
tttctttgttccgTAAGATTCTTTCGCTGGAagaattttggatatttttg
aCAATGGAATTTTGATCTTTGCTTATTCCATTTCTTTCctataattgttt
tgctttaatGTTTAATTTAGAGCCAAActctattttcaactttcaatcaG
ATTTTTATGTCTCCTAGTACGAGTAGTCCAAGCTTTTtgttttacaaatt
tcatcTCAATATTTTTAGAGCCAAATGGGATGGACAGAAAATTCATGAGT
TAGTGTTCCAGGGTGAAACGCTGACGTTTGTTGGTAAGTTGAATTTTAAC
ACCCCTGTTTCTGTGACCTGGTCGAATCTGCCCTGGTGGATAAccaggta
aaaaaaattaccaataATGACCAAATTCTAATCCACATCACAGTGTGATA
ATGCGAGTGAAGCCGATTAAATTTAATCGGAAATTACCGTTCTGTGCAAA
AATTTAATTATGTAGGTCAACCCGCTCAAAAATCCCGCGTTTTTTACGAA
GAgcagttaaaggttttatttttacatatgtGTTcttgtttcatatcaga
cacatatttcatatcaggacagcgtctccctattgttttattatgctgat
ataagcaaaatgttgttttttcctctttctgatcacTCCTACTCCaacat
ctgtgtcaatccaatgtgaaaaagcttgtgaattaaaattgatgagtaag
aaaGCGATATCACtcctatttaaaaacaaaacctttgagTAAAATAAAAT
TCTTCCTTAATTGTTTATCTACTTATTCTCAACATAATTCATTCCAAAAT
TATCTTACATATTTGCCTGCAGCATTTacaatcattttcttttcaattga
aACTTTTGCTGGTCCGTGCCCCGATGAAAATCATAGTGAACATTCTCACC
CCAGTGAGATTGAGACCGCCCAAATCTAACGCCTAATCAGACTCgatgaa
attttacttttttgatacCCTCACCCCGGGGTATTAAAACACCATCGATT
TTTTTCTCATAATATTTCATTGAGGtgaaaaaagggaccctgaccagcgg
cacattTCCGCACATCCCTGATACCTTATAGATATCCctgtattttcttc
aaattcaaagggttgtaaacgctttgacaactgttttgggagtcagtaat
gttttctaccaattttctttgtttcagcccCGTTTCAGCcaatcgatttt
cgccagacagtctcagtgaaaaagcacccagagtggctgcgtttagacca
actgacatttgtaatttggcatttgctcatgagggattcgattttaatag
cttttccattgtattttctgtcatggca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017020-exon-sc0000257-1491911889:20684..20767 | TCONS_00017020-exon-sc0000257-1491911889:20684..20767 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1510915933:20684..20767 | TCONS_00017020-exon-sc0000257-1510915933:20684..20767 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1575043694:20684..20767 | TCONS_00017020-exon-sc0000257-1575043694:20684..20767 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1491911889:21602..21666 | TCONS_00017020-exon-sc0000257-1491911889:21602..21666 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1510915933:21602..21666 | TCONS_00017020-exon-sc0000257-1510915933:21602..21666 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1575043694:21602..21666 | TCONS_00017020-exon-sc0000257-1575043694:21602..21666 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1491911889:22561..22711 | TCONS_00017020-exon-sc0000257-1491911889:22561..22711 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1510915933:22561..22711 | TCONS_00017020-exon-sc0000257-1510915933:22561..22711 | Clytia hemisphaerica | exon |
| TCONS_00017020-exon-sc0000257-1575043694:22561..22711 | TCONS_00017020-exon-sc0000257-1575043694:22561..22711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257 | supercontig | sc0000257:20684..22711 + |
Blast
The following BLAST results are available for this feature:
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