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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017025 ID=TCONS_00017025|Name=TCONS_00017025|organism=Clytia hemisphaerica|type=transcript|length=259bp
AACCAAGTCAATAACAAGTTCAATCCCTCCTGCTCACATCGCTTAAGATT
CCTTCAAGTTCTACTTTCTAAAGAAAAACCAAATCCAAAATGGCAGCTTC
TCGTGATTACGACCACAATAACACCAATGGTTACTCCTCATCATCAAGCA
ACGAAGACGAATACGCTGGATATCCGTTCGACTTTTTGGAGACCGATTTC
CAGTGTATAATTTGTACGATGGTAATAAGAGGGTTCACAGAGCTGCCATG
CGGACATGC Run BLAST on NCBI transcript from alignment at sc0000257:83046..85780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017025 ID=TCONS_00017025|Name=TCONS_00017025|organism=Clytia hemisphaerica|type=transcript|length=2735bp|location=Sequence derived from alignment at sc0000257:83046..85780+ (Clytia hemisphaerica)
AACCAAGTCAATAACAAGTTCAATCCCTCCTGCTCACATCGCTTAAGGTT
TGTCGAaccaaaatgaaatattttagtttagtttccttttctcaagctaa
atttgtttttaatttatattattttttcgaaaatgtgaGTACAACCATGT
CTGACTGACCGGtgcaacttttttcctcagttagtggggataaaaattat
attgttccaaaaTTAAGTAGTATTGTttttgagtgcaatttttaaacatt
gaatttcgagtgagaatgaaatcaaagtcaatgtcttagtggggctgaaa
ttccagggtatctTTCCATCGGGACGAAATTCTTGCAAAATCTTCCAGTT
GGGATAGGGTCCCAGcggatctgtgacacaggagtGTAAATATAGACACA
CAGATAAAGATCGTAATACAGAAAGACGTGACTTGTCAAGCAGTTTTACG
TACCTAAGAATGGGCCCATCTCTATAGTTACTCCTCTACGGTGGATTCTT
CAGCAGTTTGATTGAAATAAAAGGTGGGGACTTGTTGACTAAACCACTAT
TTAGAATAGTGTATACTTATAACAATTAAACTGGTGTGAAACCGGACCCG
ATATTTTGTACTGATGCACTGTTACTGTAAAAACATAGCCGGCTGTGATT
GGTTTAAACAAGCTTAAATTGAAAACTGTATTAACTTGACAGTCTGAAGG
ACTGATCTTAAATCTTAGCCTAGACTGTCCCAAGAAAGGGTTCGTAATAG
ATTACGTAATGtaagaaatggaaattttatcgTAATActgaaaatttata
aaagatAACTAGAAAATCAAAGAGTGAAAAGATTTCAAATGAAACCTAAT
ATACCTTAGGATCCTCTATTGAGATGGTATAAATCGTGTAGGAAAAATGT
CTAAAGGAAAAACCGCAGTACGAGCTCCTTTTGATTGCTAAATTTCCTTC
TTTCAAGACGTACAAATTAGGGTTTGCACTGGACATTATTTAGATGTTTT
ATTGTACATTCGCTTTTATATAAGATTTAACCTAAGAACACAAAGACAAG
GTTTAAGTTATAATACCATCAAAAAAGAATTCTTACTGATTGTTCTTTAA
CGACTTTAATCTCAATAAAGCGGTATTAATTATAACAATTGCACtaaaaa
tacattttatttAATCAGCAACAACATAACTCATTTCCTTAACCCTAATC
CCTCGATTTCCTATTTTAAACACTTCTTTGTACACGTagatgatttttta
ttgagGCATAattactaggtcacagtgtggatgtaaccACACTGAAAcaa
ccgccttccatcacgcatcacgctcgcgaaagagccaTCAAAATCAGGAG
TTCAACTCCGAATTCCTAGGTTACTTTTCCTCGAAACATCAATTAATTTG
GGACAGGGGTGTAACAGATGACAATGATTAAGATGAAATTCTTTCCATCG
ATTTTAATCACTCCGTAGATAAAGTGTTGGGTCCTTTATTCAAAAGGGAT
AAAAGGGATGGTATGAATAGTAGAGACAagctttaaaataaaatgttttt
aaatacaCGCCTTAATGCTTAATTGAATTCACAGTGTGAGGTCACAAGAG
atcaaaatttctctctcaaaacaTACAAATTAGGGTTTATAATGAACGTT
ATCAAGATATCcgtttttgttattgtttttcaaaagaagTAAATAAAGGC
AAGATTTAGAACCATAAAACGCTTACCAATATTTCTATTCTTTTCGTCTC
ACTAGTATCAATTCTCTTTTACAGTCAAATTTCAATCGGATCAATTTGCT
AAGCGACTTTTGACCTTTGACTTTCATGGcatcttttttattgttttact
tttacattatggtttttatttttaatttaatataaTGCATTATTTTAATC
TACTCCCTCTTCGGCTTTTATATTTCCTACATAACACAATCTCTACACTT
CTTAACCTTATGTATGccatttataaattttattattcaaaatccTATTG
ATCTAATGTTAGAAAATCatttaattagatttttgatTCATTTGTTTTTT
GACGCTCTGGTATAGGACTGGCACTTTAAAGCTCAATTAGGCTCAAAATT
ACCAAATAAAGCAGACAATTTAAGAAGACTGCTAAATTTAGATCTGCAGG
AATATCAAGCATACTTCCAAGGCAAAAGAACAGAGGGAATCAATAATAGT
TCTTTTGaaacactcctgtctcacatTCGTTTTGAAGCTTTTTTCCCATA
GCAGgggaaaattgtatgtgtttttaATTTAATAGCTTCTCTTTTGATGA
AATATAAANaaacgagattagcgtaccactatgaaagaaaccgcctccgg
cggtcgataagaAATGTAAAAGAAAAGACAGTTTCTagaaaaggttgttt
tttcaagaaaatcaagaaaatggCCACAAAAACTCATGAAAGTAGGATAG
TAAAATGAAGGAATTTTCGTGATAAAATTTCTCTAAGGTTCGAAACTGAG
CAATCACTCTTCCGTTCTTTCAGATTCCTTCAAGTTCTACTTTCTAAAGA
AAAACCAAATCCAAAATGGCAGCTTCTCGTGATTACGACCACAATAACAC
CAATGGTTACTCCTCATCATCAAGCAACGAAGACGAATACGCTGGATATC
CGTTCGACTTTTTGGAGACCGATTTCCAGTGTATAATTTGTACGATGGTA
ATAAGAGGGTTCACAGAGCTGCCATGCGGACATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017025-exon-sc0000257-1491911889:83046..83092 | TCONS_00017025-exon-sc0000257-1491911889:83046..83092 | Clytia hemisphaerica | exon |
| TCONS_00017025-exon-sc0000257-1510915933:83046..83092 | TCONS_00017025-exon-sc0000257-1510915933:83046..83092 | Clytia hemisphaerica | exon |
| TCONS_00017025-exon-sc0000257-1575043694:83046..83092 | TCONS_00017025-exon-sc0000257-1575043694:83046..83092 | Clytia hemisphaerica | exon |
| TCONS_00017025-exon-sc0000257-1491911889:85569..85780 | TCONS_00017025-exon-sc0000257-1491911889:85569..85780 | Clytia hemisphaerica | exon |
| TCONS_00017025-exon-sc0000257-1510915933:85569..85780 | TCONS_00017025-exon-sc0000257-1510915933:85569..85780 | Clytia hemisphaerica | exon |
| TCONS_00017025-exon-sc0000257-1575043694:85569..85780 | TCONS_00017025-exon-sc0000257-1575043694:85569..85780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257 | supercontig | sc0000257:83046..85780 + |
Blast
The following BLAST results are available for this feature:
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