TCONS_00017037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017037
Unique NameTCONS_00017037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017037 ID=TCONS_00017037|Name=TCONS_00017037|organism=Clytia hemisphaerica|type=transcript|length=4241bp
aaaaaattatgtttttttttattcagctCGAAGTCGCTCTAATGGCTCAA
GGCTAGAAACTGGACTTGTACCAAGAAGACGAAGTAGACGCTTGAAGAAG
AGAAATGTAACATTCAAGAAGCAAGTGATGATGTCAGCAGATATACCATA
CAAATGCTCTGCTGCTCGAAGTCTTTTTGTTGTCAGATCATTGTCAGATT
TACCAAATGAACTTTCCATTAAAATACTTGAGTATTTCAATGCAAAGGAA
TTGATTTCATTGAGATTGGTAAACAACCATTTTAAAAACCTTATTGATGG
TACCCCAAGTATTTGGTCAAGAGTTAGCTACCAAAACATGTGGCCATCAA
CGCAAAAAGACTACTCCCTTTTCAGAAGGGGTTCAAATCATGGAAATGTT
GAAAGTCTAACAAAACTTGGCTTGTCTCATCTCTACCATTATAACTTAAC
AGTTGGggaagaaaaaaacaagaaagacgTTCAAGAACACTCAATCAAAG
CTGCAAACTACTTGCACAATCTGGATCTCAATATCCATCCCAATAAACCG
TTAACTTGGATGTTAATTCGGCCACCATGGTCTATGTCTAAAAGTATCTG
CCTGAAACACTTGGTGCATACGCAAATGTTAACTCTCAAGGAATCCAAAA
TGAATGGACCATTGTGTTATAACATTGGACGTATCTTCAACTTGGAATCa
gacaacaacagcaacaaagaaaaatcaactgAAAACTTCCTACAATCTTG
TGATCTTCGCTGCTCACATGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAA
ATGAGATTTCAGCTGATGCTGGAAAGACCTTACAGTGGGTTCGAGAATTG
AGAGAATGTGCTATGACAGGGAATAAGGAAGCAATTTTTGAACTTGTTGG
TTTTGCTTTATCAAACAATTCACTTTTTATTGAGGACATGTTGAATATGA
ACAAACTCTCGAAAAACTTATTTTCCAATTGTCAATGTGTTCGTGTTGAC
AAACTTGAACTTTACCAACCTAAAATAAATAGCTTAATGAGATGTATCTT
AGTAGATTGGCTAGCAGAAGTTGCTTATATGAAAGACATGTCACATGAGG
TGTTACATGCAGCTGTTAGCTATGTTGATCGTTACTTGATGTCTCGAGTG
GTTGAAAGAACCAAATTGCAATTGTTAGGAATCTCATGTTTGTTGCTGGC
GGCAAAaTCACATTATGATGCAAGACAAGTACACATTTTGACGGTCAGAG
AATCATCATGGTTGACTGATCAAACCTACCAATATGAAGACGTTGTCAaG
ATGATGGGAGAGATTATTGGAGCATTTGCCGGTGATCTATGGAAACCTAC
TTCTTGGAATTACCTGCATACCATTCTTGCTTTACCAATGATTGACGATA
CATGGAAATCTTGTTGTCATTATGTTCATGATTTAACGCTGCAATTCACT
TTGTTTGGAAGCTACAAACCGTCTGTTGTTGCTTGTTCATCTTTATTCTT
AGCTGGTCTCATCTTGGACAGAGATAACTCTTGGCCATCAGAACTGGAag
aagttactggatttcacgTCAAAGATATTGCTAACTGTGCATCCCTTATC
CACTATAAaagcTTCACCTGCTCCTCAATGAAGGATGACCGTGGTCTGCC
ACTTGAAAGCATCAAAGCTCGATACAGGAGTCAACGAATGCATTGCATTG
CTTCCCTTCCTTTACAAGATGAGAACACGTTGAAAAGCCGCATATTATCC
ACTGACAGCACATTATCATGTGCATCGCAAGAACCACTGCAATTTGTCGT
GTTGTCTAATGACGTTGATGAAACGTTAAACACGAGCATCAAAAGTGTTG
ATTATGATGGAGACAGTGAATGCGAAGTTGATTCtgaaagtgattttgat
gagagTTTTTGTGTTGGACGCAGTCGGTTATCATCTTACCATTCAGTAGA
AGAATTCTCAGACGACGAAACCACCATGGATGCTAGCAGTTTCAATTTCC
GTGATCCTGATAACAGTTTACCACCTAAAGAGAGCTTCACGCCAATCTTT
AATAAATCGCATAACTCCTCTGCAACCAAAAGGAACTCTTTCTTTGATGG
CGtggaaaatcatgaaaataagGTCACCGGTTTTCACGGGCAATATTTGG
AACCCTTGAAATATGCAGGTGCGCAAGGTTCACATGATAAAGACTCGCCC
AACAAGCTCGATGCTGCTTGTGGTACGACAAAACCGTCCACAAGTCGCCA
CCAAAGCCCTAAATACCAACCATATCAACCATGTTCTAGCCGCTATGATC
ATGTCGGAAGGCGGACTCGTTCAAGTTGTACACGCAGGTGagagaatttc
aattttttgcttaGTGTACTTTTtagtttccttttttttaaattcaactg
TAGATATGTAAATAGACCTATTCACAATTGAGAAGTTATTTTTATCTCTA
GGGAAATGACTGACTATCTTATCCATCTTTTGAGCGTGAATATTTTCAct
aaattcttgaaaatgttattCACAATCTCTGTAGTACAAGTAGAAAGCTG
TTGCAATGGTATCTTAGAGAAGTGGGCTTGTCGCCGTGTTTGGGGCGCTA
TCTTCTTGGGTGATTTTAAAGATTGCAGATTTTACCTTTATTAAAAATGC
GTCTTAAAAGTGGATTCATAATGCGAAAAGTGTATATTTTAGTCACCAAA
TATGTCATGTGGGATGTTAGagtaaaaattatatatatccTTACtatttc
ttaacattttctagAAGCTTTTTCGGCTAtattctttattattattatag
atatttaaaaattgaaatttacaaaACATACAATATTTAGTTATGAAAGT
ACAAAAAAAATGCAACAACATTAAAAAGGCGGTCCTGTAATCGCCTTTTT
AATCATTTGTAAAAAGTTCTATGACAAttgtatcaaaattttaaaccttt
ttttttggaGTATATACATTCctagtaattatcatttttgaaaattagga
ccttcatatttttttaaactttttaattcATATTTAAGTGTTTGGGTAAT
GTCTTTCTCTATATCGAAATGGGATCGAAATTTCAGGAAACAAATTCAGT
TTAGATAGGCTGACTGGTCTATGTATTATGTGTCTTTTATTATATGTAAA
CACCATGCTAATTATTTCTTTGGAAATTCGATGTCTCTTTCGTTGGTCAA
AAATTAAGCTgtccgatttaaaaaaaaaatcttgtatGACTAGTTATTTG
TCACTTTGTATATTTTCTCATATAACTACTTAATTGAATAATGAAACAAA
AGAACATTTTATTCAATAACATTTTcatgtaaaatatttcttatttattt
gtttctttctatagatttcCTTACGTTATTTGTCTTCGTACTTAATTAGA
TAGCTTTGTTAGAATTACGAGTTTATTTCCAAATAAAATGtatacctttt
cgaccgtagccgctaaTTGCCGCGCCGGCATTTTTTTTGtctgctttatc
ccactaaaaccgtcccagtccttttttaacacctatagacaatagaaaaa
tgtgtcaaaaaaggattgggtcgagtttagggggataattaaatgaTTAA
GTGGCACGTGCCTAACCACGCGgctacgatcgaaaaggtgtacAGATACC
TATTTGCGGAAGGTTTATAAAGACTTTTACACTCTAAactttgattgcgt
gaattttGTAATGTCAGCTTTATCTAAGGTTGTACTTTATCTATGTTTGT
ATTAATAGTTTCTGTTTCCTTAGCTTACCAGGTAAAGAGTGTCCGGGAAA
AGAGGAACATAATTTTCAGTGTGTGTTTTATTTGgtctttttaattattt
tagtgttttttttatCACTGATCCTTTACCTTCTTCCTTTCAGAGACACT
TTATTTGTTTCTATATTTCACTTattccattttgtttttgttttttttat
ctagGTATTGTTCCCATTGTCTAGGTAGAGTGTATATACAGGACCTCTCG
TTAATTTTATtggttatttttctttaattttttttttacgatTCGTAGTG
ATTCATATTATTATACTCTTTGCTTTTATCTCTCTAAGAATTTGTTATTA
TCAAAAATGTAGCATACATAATATTCTTCATTATTAAGTACATGTTAATT
TTATTTCCTCAATTTTTAACACCCTATACCGTTTTTAAGTTAATGATAAT
GTTtacaaaagatatttttaaaagaaaactttgaaCGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000257:175833..187598+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017037 ID=TCONS_00017037|Name=TCONS_00017037|organism=Clytia hemisphaerica|type=transcript|length=11766bp|location=Sequence derived from alignment at sc0000257:175833..187598+ (Clytia hemisphaerica)
aaaaaattatgtttttttttattcagctCGAAGTCGCTCTAATGGCTCAA
GGCTAGAAACTGGACTTGTACCAAGAAGACGAAGTAGACGCTTGAAGAAG
AGAAATGTAACATTCAAGAAGCAAGTGATGATGTCAGCAGATATACCATA
CAAATGCTCTGCTGCTCGAAGTCTTTTTGTTGTCAGATCATTGTCAGATT
TACCAAATGAACTTTCCATTAAAATACTTGAGTATTTCAATGCAAAGGAA
TTGATTTCATTGAGATTGGTAAGAATAACAGTATAATCACTTGTTTGTGT
TAAAGTATGTGGATACCTTCATTTTGAATTATTAtccaaaaaatttttaa
catgtATCAACATTTCTCCAACCTAGTACAAAATTTatgaattaatttaa
aatctaaTTATTTGAAAAGATTGGTATCTCttctgtgaaaatttaaaagt
agTTTTGGATTTTTAATTCACTATGCCCTATGCTTCATACATAGGATAAT
GGAAAACCTACATTTTTACAGGCCACAAACCattttaaatgctttaaaat
gcCCATGACTTACTGTAAAACTGCAGCATGATAATTTCAAGCTCAAAATT
CTCCAAATCCCAACTACAAAATGGTATTGTCTCATCGTCACTTTTCAATC
CATAGGTAAACAACCATTTTAAAAACCTTATTGATGGTACCCCAAGTATT
TGGTCAAGAGTTAGCTACCAAAACATGTGGCCATCAACGCAAAAAGACTA
CTCCCTTTTCAGAAGGTAATACATTCATTTTTGATCTTCTTCTTGGAATA
AAATTGCTGAGCCTACCTGGAgcatattcttttttttcttctgtagTTTA
AAACCCACCACAGAACATTTGAGCTTTATGGTTAATTGCACTTTCATTTT
AGGGGTTCAAATCATGGAAATGTTGAAAGTCTAACAAAACTTGGCTTGTC
TCATCTCTACCATTATAACTTAACAGGTTGGTTTAcaaatttgatgaaac
aaagcacaattttcatttgctcttctttttttagaaaacacAATCCTTCC
CTTAGCAGCAAAAAAAGAGGATATTAGAGCTTTCTCTGTTTGTTGCTACA
AATCCACTTAccacttttttacttttaggtataaacttcttaagagcaga
aacttttgcgataTACATGAATTTTAACCCTTtttgcaaaagtaaatgtc
tttaaaatttcttgaagGGGTCATTCCTGAAAGTTTATGGGCATTATTCA
AGGAGGCGCTTATTAACCTAGGTCACTTTAGTAAAATGAATGGGAACCTC
ATTTGTAACTTCCCAAGcaatttaaagtacctgaaaatcagaCCGGTCTT
GGTCTTATTACGAGCGGTCTAGTAGCGGCCAAGTCTTTGTTTAGATCGGC
CTCCAGACTTTCTAGAAACGTGATCTCTAACAGTCCTGGTCGCTTCTAGA
TGCTTGTGGCCGCTTATTAGACTGGTCTAGGTTGCTTGTTAGACGGGTCC
GGGCTGTTTGTTAAATCGCTCCAAGCCGCTGGTTAGTGATTTTTAGTAAC
AATTAcatcaaaaaattgtaaaaggATGTCAACCGATCGCCCGGTCTCAG
ACCAGACGCTTTGCAGCAACAGCTAAATTAACTAGACTCGTAGCAGCCTT
TTGGTTAGCAGCCTTTTGGTAAACTTTTTACTTTCCATTTCTTGCTTTGA
TAAATAGTTGGggaagaaaaaaacaagaaagacgTTCNCATTTCTTGCTT
TAATAAATAGTTGGggaagaaaaaaacaagaaagacgTTCAAGAACACTC
AATCAAAGCTGCAAACTACTTGCACAATCTGGATCTCAATATCCATCCCA
ATAAACCGTTAACTTGGATGTTAATTCGGCCACCATGGTCTATGTCTAAA
AGTATCTGCCTGAAACACTTGGTGCATACGCAAATGTTAACTCTCAAGGT
ATGCTTTAGAATTTAATATTCCTTGCTTTTCTTTGATGATTTGCATCAGC
CTAACTTTCCCTTgtaatgtcttatttttttggatAAATTAATGTATTGA
CTGTACAACggtgctgcaaataaggaaaaGGAAATTTTTCAGTTGGCGGG
TAATTTCCTTAATTTCAGATTGGCTAAAGACCTATTTTAATTTAAAGTTt
gtcttttatttgaaagcGGTATGAAGTATCTAGTTGGGCTGAATAGAAAT
GTAATTAGCatgattaaaaataataaaagaactTTAATAAGCCTATAACT
TATAATATTAACCTGACTGGTAATTACCagtcaccggccgttatttgcgG
CACTTTAATGACTTGCGATTTAAAACTGAACTTTgagaaaaatagatttt
atttaatTCTTCTTCCCTGTAGGAATCCAAAATGAATGGACCATTGTGTT
ATAACATTGGACGTATCTTCAACTTGGAATCagacaacaacagcaacaaa
gaaaaatcaactgAAAACTTCCTACAATCTTGTGATCTTCGCTGCTCACA
TGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCAGCTGATG
CTGGAAAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGCTATGACA
GGGAATAAGGAAGCAATTTTTGAACTTGTTGGTTTTGCTTTATCAAACAA
TTCACTTTTTATTGAGGACATGTTGAATATGAACAAACTCTCGAAAAACT
TATTTTCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACTTTACCAA
CCTAAAATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGCTAGCAGA
AGTTGCTTATATGAAAGACATGTCACATGAGGTGTTACATGCAGCTGTTA
GCTATGTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAACCAAATTG
CAATTGTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAGTAAGTTTGGCC
TTGGGTCAATATATTCTTAAATTGCTTTCTAATGTTTCAATGAATGCATA
TCTTTGTGATAAGTATCAAAAGTACATCATTTTGCTGTCAAGTGGAAATG
ATCCAGATATGAATTTCCCTATACAATGTAGATAAGTGTTAAATAACATT
GCTTGATATAAATTTGGATGGCAAAATGGATTTTGTATTATTTATCTTCA
AAACCAAGTATTTCACACATCAGGGGATCCTTTCGACATGTGCAAAATTC
ATTTAAGCCTTCGCAATGCAATAATGAATTCTTTTCAATTGAAATATATC
CTTTTCATATCACATtttcaaatactttttaaaatgtttagaTCACATTA
TGATGCAAGACAAGTACACATTTTGACGGTCAGAGAATCATCATGGTTGA
CTGATCAAACCTACCAATATGAAGACGTTGTCAagtatataaatattttt
tcatgagcTTGTGTTAGACATACATTTTTAATCTTTATGTCAACTTGAGT
CTAAAACGATTGCTTTGTGCATAGGATTTGAATCTAGCTTAATTTCAGAA
AGAATTTTCGATTTATGTTTTGTATGTATGATTTCATTCACCTNCATTTC
TTGCTTTAATAAATAGTTGGggaagaaaaaaacaagaaagacgTTCAAGA
ACACTCAATCAAAGCTGCAAACTACTTGCACAATCTGGATCTCAATATCC
ATCCCAATAAACCGCTAACTTGGATGTTAATTCGGCCACCATGGTCTATG
TCTAAAAGTATCTGCCTGAAACACTTGGTGCATACGCAAATGTTAACTCT
CAAGGTATGCTTTAGAATTTAATATTCCTTGCTTTTCTTTGATGATTTGC
ATCAGCCTAACTTTCCCTTgtaatgtcttatttttttggatAAATTAATG
TATTGACTGTAcaacagtgctgcaaataaggaaaaGGAAATTTTTCAGTT
GGCGGGTAATTTCCTTAATTTCAGATTGGCTAAAGACCTATTTTAATTTA
AAGTTtgtcttttatttgaaagcGGTATGAAGTATCTAGTTGGGCTGAAT
AGAAATGTAATTAGCatgattaaaaataataaaagaactTTAATAAGCCT
ATAACTTATAATATTAACCTGACTGGTAATTACCagtcaccggccgttat
ttgcgGCACTTTAATGACTTGCGATTTAAAACTGAACTTTgagaaaaata
gattttatttaatTCTTCTTCCCTGTAGGAATCCAAAATGAATGGACCAT
TGTGTTATAACATTGGACGTATCTTCAACTTGGAATCagacaacaacagc
aacaaagaaaaatcaactgAAAACTTCCTACAATCTTGTGATCTTCGCTG
CTCACATGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCAG
CTGATGCTGGAAAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGCT
ATGACAGGGAATAAGGAAGCAATTTTTGAACTTGTTGGTTTTGCTTTATC
AAACAATTCACTTTTTATTGAGGACATGTTGAATATGAACAAACTCTCGA
AAAACTTATTTTCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACTT
TACCAACCTAAAATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGCT
AGCAGAAGTTGCTTATATGAAAGACATGTCACATGAGGTGTTACATGCAG
CTGTTAGCTATGTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAACC
AAATTGCAATTGTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAGTAAGT
TTGGCCTTGGGTCAATATATTCTTAAATTGCTTTCTAATGTTTCAATGAA
TGCATATCTTTGTGATAAGTATCAAAAGTACATCATTTTGCTGTCAAGTG
GAAATGATCCAGATATGAATTTCCCTATACAATGTAGATAAGTGTTAAAT
AACATTGCTTGATATAAATTTGGATGGCAAAATGGATTTTGTATTATTTA
TCTTCAAAACCAAGTATTTCACACATCAGGGGATCCTTTCGACATGTGCA
AAATTCATTTAAGCCTTCGCAATGCAATAATGAATTCTTTTCAATTGAAA
TATATCCTTTTCATATCACATtttcaaatactttttaaaatgtttagaTC
ACATTATGATGCAAGACAAGTACACATTTTGACGGTCAGAGAATCATCAT
GGTTGACTGATCAAACCTACCAATATGAAGACGTTGTCAagtatataaat
attttttcatgagcTTGTGTTAGACATACATTTTTAATCTTTATGTCAAC
TTGAGTCTAAAACGATTGCTTTGTGCATAGGATTTGAATCTAGCTTAATT
TCAGAAAGAATTTTCGATTTATGTTTTGTATGTATGATTTCATTCACCTT
AAAAGGTTGGATTTCGTGATGACAatgtaaatttctttttcttgataTTA
TTATCCATTTTTCAGGATGATGGGAGAGATTATTGGAGCATTTGCCGGTG
ATCTATGGAAACCTACTTCTTGGAATTACCTGCATACCATTCTTGCTTTA
CCAATGGTACAAATTGTTTGCATTTTGAAACCTTAGCCAACGACCACCAT
AACGACTATAAGCTGATatcattaaaaataatcagTGAGCTTTATAAGCT
CTGGACAAAGCTGTCAACCATCTTTGATCAGATCGGGCTACACAGGCCTA
CTCTGCAGAGTTGCCCGTTgttaggaaattaatttttgatctctttttgc
ttttttttttttgattttttcgctatCTTTTTCTGCAATGcgtaaaaaat
taattgaagCTGAAGGAACCGGTTAAGAAATACAGTATTGACTGTTTTTT
TCAGGCTGTACTATTATATATTGCCCttggtcaacgcaacaaccttgcaa
gctcggtcgttacttgacctcgggcaatatttttcagtacagccctcaca
aaccggtcattattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCGGCCGTTATTTGCGGCACTTTAATGACTTGCGATTTAA
AACTGAACTTTgagaaaaatagattttatttaatTCTTCTTCCCTGTAGG
AATCCAAAATGAATGGACCATTGTGTTATAACATTGGACGTATCTTCAAC
TTGGAATCagacaacaacagcaacaaagaaaaatcaactgAAAACTTCCT
ACAATCTTGTGATCTTCGCTGCTCACATGCAAAGTTTGAGCTTCTGTTGG
CAAGGAAAAATGAGATTTCAGCTGATGCTGGAAAGACCTTACAGTGGGTT
CGAGAATTGAGAGAATGTGCTATGACAGGGAATAAGgaaacaatttttga
acttgTTGGTTTTGCTTTATCAAACAATTCACTTTTTATTGAGGACATGT
TGAATATGAACAAACTCTCGAAAAACTTATTTTCCAATTGTCAATGTGTT
CGTGTTGACAAACTTGAACTTTACCAACCTAAAATAAATAGCTTAATGAG
ATGTATCTTAGTAGATTGGCTAGCAGAAGTTGCTTATATGAAAGACATGT
CACATGAGGTGTTACATGCAGCTGTTAGCTATGTTGATCGTTACTTGATG
TCTCGAGTGGTTGAAAGAACCAAATTGCAATTGTTAGGAATCTCATGTTT
GTTGCTGGCGGCAAAGTAAGTTTGGCCTTGGGTCAATATATTCTTAAATT
GCTTTCTAATGGTTTAATGAATGCATATCTTTGTGATAAGTATCAAAAGT
ACATCATTTTGCAGTCAAGTGGAAATTACCAGATATGAAGTTCCCTATAC
CATGTAGATAAGTGTTGAATAACATTGCTAGATATAAGTTTGGATGGCAA
AATGGATTTCATATTATTTATCTTCAAAACCAAGTATTTCACACATCAGA
GAATCCTTTCGACATGTGCAAAATTCGTTTAAGCCTTCGCAATGCAATAA
TAATGAATTCTTTTCAATTGAAATACATCCTTTTCATATCACATtttcaa
atactttttaaaatgtttagaTCACATTATGATGCAAGACAAGTACACAT
TTTGACGGTCAGAGAATCATCATGGTTGACTGATCAAACCTACCAATATG
AAGACGTTGTCAagtatataaatattttttcatgagcTTGTGTTAGACAT
ACATTTTTAATCTTTATGTCAACTTGAGTCTAAAACGATTGCTTTGTGCA
TAGGATTTGAATCTAGCTTAATTTCAGAAAGAATTTTCGATTTATGTTTT
GTATGTATGATTTCATTCACCTTAAAAGGTTGGATTTCGTGATGACAatg
taaatttctttttcttgataTTATTATCCATTTTTCAGGATGATGGGAGA
GATTATTGGAGCATTTGCCGGTGATCTATGGAAACCTACTTCTTGGAATT
ACCTGCATACCATTCTTGCTTTACCAATGGTACAAATTGTTTGCATTTTG
AAACCTTAGCCAACGACCACCATAACGACTATAAGCTGATatcattaaaa
ataatcagTGAGCTTTATAAGCTCTGGACAAAGCTGTCAACCATCTTTGA
TCAGATCGGGCTACACAGGCCTACTCTGCAGAGTTGCCCGTTgttaggaa
attaatttttgatctctttttgcttttttttttttgattttttcgctatC
TTTTTCTGCAATGcgtaaaaaattaattgaagCTGAAGGAACCGGTTAAG
AAATACAGTATTGACTGTTTTTTTCAGGCTGTACTATTATATATTGCCCt
tggtcaacgcaacaaccttgcaagctcggtcgttacttgacctcgggcaa
tatttttcagtacagccctcacaaaccggtcattattgcattagagtagt
gctaccatttaggtaccactttcaaaaaactctgatcaaaggTTTGGTTG
GCCAAGACAGAGAGACTGCCTCAAGAGCCTTTGTAAAGCTCAGTTAAGAT
AATATGTATTATgtgcaaataaaaaataataatccaGGCTTCACATTGAT
TCTTGTCAAAGTCAACTTTTGTAACTCAAAGTGCAAGAACACAACCGGAT
TTGTGGGGGATGTACTATTGAATTttactttgatttcttttgttcaCGTT
TTAGATTGACGATACATGGAAATCTTGTTGTCATTATGTTCATGATTTAA
CGCTGCAATTCACTTTGTTTGGAAGGTAATTTTAAATCTTGATTTTCTTA
GGGAATCTGCTACGTTAATTTCAATATATAAATTAGGTTTTAAAGATTAC
ATTTAATTTTCACGAGATTCAATTTTCTGATATATATTTTTGTGAATGAA
GAAAAAATCAGAGAAGTTGAAATGGTTCTGAAAgcgaaaacctgaaaatt
aatCCCATGAAAATTAATCCCGCGAATGTTAATCTGATTACagtagaaaa
taaaaaaccaGAGTAAATGTTCAGAAGTTGAAGCTAATGATCAAAAGCCA
GGCATTTCGTATGTAAGAATCCTAATGGTAATAAAGGCActctcaaaaat
gtttttcttcttccAGCTACAAACCGTCTGTTGTTGCTTGTTCATCTTTA
TTCTTAGCTGGTCTCATCTTGGACAGAGGTATGgtttttctattcatttt
ctcaattttcgtGCATTAAAGCGTGTGTTTATAAAAAACCACCACATAAA
AACAGTTGTTACATGATGTCTGTCTGATCTGTTACCATTCTTTTTTCTCT
GATTTGCTttagtttgttttgatctgatttcagttgttttgttttcagaa
aaatcgaTTGAAAGAAGCCGACAGCATTTTTTTTACCCAGTCTGAAAGTA
ATGATTTTTATCCAAGTTAGATAAAGAACTAAAAGAAAAGACCACAGCCA
GTCCTGACTATAGTATACAAACCGATTATGTGTTATTATACATTTTTTCA
CTCTCTCACTCTCTCTCACTCTCTCGTAGATAACTCTTGGCCATCAGAAC
TGGAagaagttactggatttcacgTCAAAGATATTGCTAACTGTGCATCC
CTTATCCACTATAAaaggtgaaaaagaaaattcgttTCTCCTTGAATTTG
GAGCAAAAGAAATTTGGGGCTATTgcacaaaatttgaaatgataaaatga
tattttaacaaatcatatttcaacattttttttcagcTTCACCTGCTCCT
CAATGAAGGATGACCGTGGTCTGCCACTTGAAAGCATCAAAGCTCGATAC
AGGAGTCAACGAATGCATTGCATTGCTTCCCTTCCTTTACAAGATGAGAA
CACGTTGAAAAGCCGCATATTATCCACTGACAGCACATTATCATGTGCAT
CGCAAGAACCACTGCAATTTGTCGTGTTGTCTAATGACGTTGATGAAACG
TTAAACACGAGCATCAAAAGTGTTGATTATGATGGAGACAGTGAATGCGA
AGTTGATTCtgaaagtgattttgatgagagTTTTTGTGTTGGACGCAGTC
GGTTATCATCTTACCATTCAGTAGAAGAATTCTCAGACGACGAAACCACC
ATGGATGCTAGCAGTTTCAATTTCCGTGATCCTGATAACAGTTTACCACC
TAAAGAGAGCTTCACGCCAATCTTTAATAAATCGCATAACTCCTCTGCAA
CCAAAAGGAACTCTTTCTTTGATGGCGtggaaaatcatgaaaataagGTC
ACCGGTTTTCACGGGCAATATTTGGAACCCTTGAAATATGCAGGTGCGCA
AGGTTCACATGATAAAGACTCGCCCAACAAGCTCGATGCTGCTTGTGGTA
CGACAAAACCGTCCACAAGTCGCCACCAAAGCCCTAAATACCAACCATAT
CAACCATGTTCTAGCCGCTATGATCATGTCGGAAGGCGGACTCGTTCAAG
TTGTACACGCAGGTGagagaatttcaattttttgcttaGTGTACTTTTta
gtttccttttttttaaattcaactgTAGATATGTAAATAGACCTATTCAC
AATTGAGAAGTTATTTTTATCTCTAGGGAAATGACTGACTATCTTATCCA
TCTTTTGAGCGTGAATATTTTCActaaattcttgaaaatgttattCACAA
TCTCTGTAGTACAAGTAGAAAGCTGTTGCAATGGTATCTTAGAGAAGTGG
GCTTGTCGCCGTGTTTGGGGCGCTATCTTCTTGGGTGATTTTAAAGATTG
CAGATTTTACCTTTATTAAAAATGCGTCTTAAAAGTGGATTCATAATGCG
AAAAGTGTATATTTTAGTCACCAAATATGTCATGTGGGATGTTAGagtaa
aaattatatatatccTTACtatttcttaacattttctagAAGCTTTTTCG
GCTAtattctttattattattatagatatttaaaaattgaaatttacaaa
ACATACAATATTTAGTTATGAAAGTACAAAAAAAATGCAACAACATTAAA
AAGGCGGTCCTGTAATCGCCTTTTTAATCATTTGTAAAAAGTTCTATGAC
AAttgtatcaaaattttaaacctttttttttggaGTATATACATTCctag
taattatcatttttgaaaattaggaccttcatatttttttaaacttttta
attcATATTTAAGTGTTTGGGTAATGTCTTTCTCTATATCGAAATGGGAT
CGAAATTTCAGGAAACAAATTCAGTTTAGATAGGCTGACTGGTCTATGTA
TTATGTGTCTTTTATTATATGTAAACACCATGCTAATTATTTCTTTGGAA
ATTCGATGTCTCTTTCGTTGGTCAAAAATTAAGCTgtccgatttaaaaaa
aaaatcttgtatGACTAGTTATTTGTCACTTTGTATATTTTCTCATATAA
CTACTTAATTGAATAATGAAACAAAAGAACATTTTATTCAATAACATTTT
catgtaaaatatttcttatttatttgtttctttctatagatttcCTTACG
TTATTTGTCTTCGTACTTAATTAGATAGCTTTGTTAGAATTACGAGTTTA
TTTCCAAATAAAATGtataccttttcgaccgtagccgctaaTTGCCGCGC
CGGCATTTTTTTTGtctgctttatcccactaaaaccgtcccagtcctttt
ttaacacctatagacaatagaaaaatgtgtcaaaaaaggattgggtcgag
tttagggggataattaaatgaTTAAGTGGCACGTGCCTAACCACGCGgct
acgatcgaaaaggtgtacAGATACCTATTTGCGGAAGGTTTATAAAGACT
TTTACACTCTAAactttgattgcgtgaattttGTAATGTCAGCTTTATCT
AAGGTTGTACTTTATCTATGTTTGTATTAATAGTTTCTGTTTCCTTAGCT
TACCAGGTAAAGAGTGTCCGGGAAAAGAGGAACATAATTTTCAGTGTGTG
TTTTATTTGgtctttttaattattttagtgttttttttatCACTGATCCT
TTACCTTCTTCCTTTCAGAGACACTTTATTTGTTTCTATATTTCACTTat
tccattttgtttttgttttttttatctagGTATTGTTCCCATTGTCTAGG
TAGAGTGTATATACAGGACCTCTCGTTAATTTTATtggttatttttcttt
aattttttttttacgatTCGTAGTGATTCATATTATTATACTCTTTGCTT
TTATCTCTCTAAGAATTTGTTATTATCAAAAATGTAGCATACATAATATT
CTTCATTATTAAGTACATGTTAATTTTATTTCCTCAATTTTTAACACCCT
ATACCGTTTTTAAGTTAATGATAATGTTtacaaaagatatttttaaaaga
aaactttgaaCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009528XLOC_009528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017037-exon-sc0000257-1491911889:175833..176100TCONS_00017037-exon-sc0000257-1491911889:175833..176100Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:175833..176100TCONS_00017037-exon-sc0000257-1510915933:175833..176100Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:175833..176100TCONS_00017037-exon-sc0000257-1575043694:175833..176100Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:176488..176597TCONS_00017037-exon-sc0000257-1491911889:176488..176597Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:176488..176597TCONS_00017037-exon-sc0000257-1510915933:176488..176597Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:176488..176597TCONS_00017037-exon-sc0000257-1575043694:176488..176597Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:176735..176808TCONS_00017037-exon-sc0000257-1491911889:176735..176808Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:176735..176808TCONS_00017037-exon-sc0000257-1510915933:176735..176808Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:176735..176808TCONS_00017037-exon-sc0000257-1575043694:176735..176808Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:177593..177780TCONS_00017037-exon-sc0000257-1491911889:177593..177780Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:177593..177780TCONS_00017037-exon-sc0000257-1510915933:177593..177780Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:177593..177780TCONS_00017037-exon-sc0000257-1575043694:177593..177780Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:178205..178770TCONS_00017037-exon-sc0000257-1491911889:178205..178770Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:178205..178770TCONS_00017037-exon-sc0000257-1510915933:178205..178770Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:178205..178770TCONS_00017037-exon-sc0000257-1575043694:178205..178770Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:179124..179216TCONS_00017037-exon-sc0000257-1491911889:179124..179216Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:179124..179216TCONS_00017037-exon-sc0000257-1510915933:179124..179216Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:179124..179216TCONS_00017037-exon-sc0000257-1575043694:179124..179216Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:183171..183261TCONS_00017037-exon-sc0000257-1491911889:183171..183261Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:183171..183261TCONS_00017037-exon-sc0000257-1510915933:183171..183261Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:183171..183261TCONS_00017037-exon-sc0000257-1575043694:183171..183261Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:183937..184007TCONS_00017037-exon-sc0000257-1491911889:183937..184007Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:183937..184007TCONS_00017037-exon-sc0000257-1510915933:183937..184007Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:183937..184007TCONS_00017037-exon-sc0000257-1575043694:183937..184007Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:184349..184410TCONS_00017037-exon-sc0000257-1491911889:184349..184410Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:184349..184410TCONS_00017037-exon-sc0000257-1510915933:184349..184410Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:184349..184410TCONS_00017037-exon-sc0000257-1575043694:184349..184410Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:184762..184849TCONS_00017037-exon-sc0000257-1491911889:184762..184849Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:184762..184849TCONS_00017037-exon-sc0000257-1510915933:184762..184849Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:184762..184849TCONS_00017037-exon-sc0000257-1575043694:184762..184849Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1491911889:184969..187598TCONS_00017037-exon-sc0000257-1491911889:184969..187598Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1510915933:184969..187598TCONS_00017037-exon-sc0000257-1510915933:184969..187598Clytia hemisphaericaexon
TCONS_00017037-exon-sc0000257-1575043694:184969..187598TCONS_00017037-exon-sc0000257-1575043694:184969..187598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:175833..187598 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07641	0.000609131	0	0.000156663	0	0	3.18301e-08	3.66903e-10	0.000361909	0.00348413	1.44024e-08	4.48139e-07	0.0404409	0.000994569	0.725956	2.13345	0.451329	0.484957	0.601465	1.63783	0.309884	0.169254	0.0331143	0.722533	0	0	0.00624838	0.730403	0.000213719	0.256524
Blast
[Close]
BLAST of TCONS_00017037 vs. Swiss-Prot (Human)
Match: CCNF (Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 3.696e-71
Identity = 161/499 (32.26%), Postives = 279/499 (55.91%), Query Frame = 2 
Query:  200 LPNELSIKILEYFNAKELISLRLVNNHFKNLIDGTPSIWSRVSYQNMWPSTQKDYSLFRRGSNHGNVESLTKLGLSHLYHYNLTVGEEKNKKDVQEHSIKAANYLHNLD-LNIHPNKPLTWMLIRPPWSMSKSICLKHLVHTQMLTLKESKMN--GPLCYNIGRIFNLESDNNSNKEKSTENFLQSCDLRCSHAKFELLLARKNEISADAGKTLQWVRELRECAMTGNKEAIFELVGFALSNNSLFIEDMLNMNKLSKNLFSNCQCVRVDKLELYQPKINSLMRCILVDWLAEVAYMKDMSHEVLHAAVSYVDRYLMSRVVERTKLQLLGISCLLLAAKSHYDARQVHILTVRESSWLTDQTYQYEDVVKMMGEIIGAFAGDLWKPTSWNYLHTILALPMIDDTWKSCCHYVHDLTLQFTLFGSYKPSVVACSSLFLAGLILDRDNSWPSELEEVTGFHVKDIANCASLIHYKSFTCSSMKDDRGLPLESIKARYRSQR 1687
            LP ++   IL++ + ++++++R V++  K+L+D   S+W+  S+Q +WPS   +  LF R +  GN E+  KLG+++LY+  L+V +E      + + +KA+ +    + LN+    P  W+ IRPPWS+S S C K +VH  +    + +      + + +GR+ +L  D    ++++ + F ++    C  + + L  + +    +D G+ L   R+LR+ A  G  EA   L     + N L +E +   +++   LF   Q V   ++   Q  +N  MR IL+DWL EVA MKD +   LH  V  VDRYL  R+V R +LQLLGI+C+++  +  + +++  ILT+RE+ WLTD TY+YED+V+MMGEI+ A  G +  PT  +Y   +L L  ++   +  C ++ +L+L  T   +Y P+ +A ++L LA L   +   W ++L ++TGF  +D+  C   +H K F   + KD R + L ++K R+  +R
Sbjct:   35 LPEDVLFHILKWLSVEDILAVRAVHSQLKDLVDNHASVWACASFQELWPSP-GNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSDEAR---AEVNGLKASRFFSLAERLNVG-AAPFIWLFIRPPWSVSGSCC-KAVVHESLRAECQLQRTHKASILHCLGRVLSLFEDEE-KQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLE-VRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACMVICTR--FISKE--ILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKR 521
The following BLAST results are available for this feature:
BLAST of TCONS_00017037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNF3.696e-7132.26Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2[more]
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