TCONS_00017039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017039
Unique NameTCONS_00017039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017039 ID=TCONS_00017039|Name=TCONS_00017039|organism=Clytia hemisphaerica|type=transcript|length=4238bp
aaattatgtttttttttattcagctCGAAGTCGCTCTAATGGCTCAAGGC
TAGAAACTGGACTTGTACCAAGAAGACGAAGTAGACGCTTGAAGAAGAGA
AATGTAACATTCAAGAAGCAAGTGATGATGTCAGCAGATATACCATACAA
ATGCTCTGCTGCTCGAAGTCTTTTTGTTGTCAGATCATTGTCAGATTTAC
CAAATGAACTTTCCATTAAAATACTTGAGTATTTCAATGCAAAGGAATTG
ATTTCATTGAGATTGGTAAACAACCATTTTAAAAACCTTATTGATGGTAC
CCCAAGTATTTGGTCAAGAGTTAGCTACCAAAACATGTGGCCATCAACGC
AAAAAGACTACTCCCTTTTCAGAAGGGGTTCAAATCATGGAAATGTTGAA
AGTCTAACAAAACTTGGCTTGTCTCATCTCTACCATTATAACTTAACAGT
TGGggaagaaaaaaacaagaaagacgTTCAAGAACACTCAATCAAAGCTG
CAAACTACTTGCACAATCTGGATCTCAATATCCATCCCAATAAACCGTTA
ACTTGGATGTTAATTCGGCCACCATGGTCTATGTCTAAAAGTATCTGCCT
GAAACACTTGGTGCATACGCAAATGTTAACTCTCAAGGAATCCAAAATGA
ATGGACCATTGTGTTATAACATTGGACGTATCTTCAACTTGGAATCagac
aacaacagcaacaaagaaaaatcaactgAAAACTTCCTACAATCTTGTGA
TCTTCGCTGCTCACATGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAAATG
AGATTTCAGCTGATGCTGGAAAGACCTTACAGTGGGTTCGAGAATTGAGA
GAATGTGCTATGACAGGGAATAAGGAAGCAATTTTTGAACTTGTTGGTTT
TGCTTTATCAAACAATTCACTTTTTATTGAGGACATGTTGAATATGAACA
AACTCTCGAAAAACTTATTTTCCAATTGTCAATGTGTTCGTGTTGACAAA
CTTGAACTTTACCAACCTAAAATAAATAGCTTAATGAGATGTATCTTAGT
AGATTGGCTAGCAGAAGTTGCTTATATGAAAGACATGTCACATGAGGTGT
TACATGCAGCTGTTAGCTATGTTGATCGTTACTTGATGTCTCGAGTGGTT
GAAAGAACCAAATTGCAATTGTTAGGAATCTCATGTTTGTTGCTGGCGGC
AAAaTCACATTATGATGCAAGACAAGTACACATTTTGACGGTCAGAGAAT
CATCATGGTTGACTGATCAAACCTACCAATATGAAGACGTTGTCAaGATG
ATGGGAGAGATTATTGGAGCATTTGCCGGTGATCTATGGAAACCTACTTC
TTGGAATTACCTGCATACCATTCTTGCTTTACCAATGATTGACGATACAT
GGAAATCTTGTTGTCATTATGTTCATGATTTAACGCTGCAATTCACTTTG
TTTGGAAGCTACAAACCGTCTGTTGTTGCTTGTTCATCTTTATTCTTAGC
TGGTCTCATCTTGGACAGAGATAACTCTTGGCCATCAGAACTGGAagaag
ttactggatttcacgTCAAAGATATTGCTAACTGTGCATCCCTTATCCAC
TATAAaagcTTCACCTGCTCCTCAATGAAGGATGACCGTGGTCTGCCACT
TGAAAGCATCAAAGCTCGATACAGGAGTCAACGAATGCATTGCATTGCTT
CCCTTCCTTTACAAGATGAGAACACGTTGAAAAGCCGCATATTATCCACT
GACAGCACATTATCATGTGCATCGCAAGAACCACTGCAATTTGTCGTGTT
GTCTAATGACGTTGATGAAACGTTAAACACGAGCATCAAAAGTGTTGATT
ATGATGGAGACAGTGAATGCGAAGTTGATTCtgaaagtgattttgatgag
agTTTTTGTGTTGGACGCAGTCGGTTATCATCTTACCATTCAGTAGAAGA
ATTCTCAGACGACGAAACCACCATGGATGCTAGCAGTTTCAATTTCCGTG
ATCCTGATAACAGTTTACCACCTAAAGAGAGCTTCACGCCAATCTTTAAT
AAATCGCATAACTCCTCTGCAACCAAAAGGAACTCTTTCTTTGATGGCGt
ggaaaatcatgaaaataagGTCACCGGTTTTCACGGGCAATATTTGGAAC
CCTTGAAATATGCAGGTGCGCAAGGTTCACATGATAAAGACTCGCCCAAC
AAGCTCGATGCTGCTTGTGGTACGACAAAACCGTCCACAAGTCGCCACCA
AAGCCCTAAATACCAACCATATCAACCATGTTCTAGCCGCTATGATCATG
TCGGAAGGCGGACTCGTTCAAGTTGTACACGCAGGTGagagaatttcaat
tttttgcttaGTGTACTTTTtagtttccttttttttaaattcaactgTAG
ATATGTAAATAGACCTATTCACAATTGAGAAGTTATTTTTATCTCTAGGG
AAATGACTGACTATCTTATCCATCTTTTGAGCGTGAATATTTTCActaaa
ttcttgaaaatgttattCACAATCTCTGTAGTACAAGTAGAAAGCTGTTG
CAATGGTATCTTAGAGAAGTGGGCTTGTCGCCGTGTTTGGGGCGCTATCT
TCTTGGGTGATTTTAAAGATTGCAGATTTTACCTTTATTAAAAATGCGTC
TTAAAAGTGGATTCATAATGCGAAAAGTGTATATTTTAGTCACCAAATAT
GTCATGTGGGATGTTAGagtaaaaattatatatatccTTACtatttctta
acattttctagAAGCTTTTTCGGCTAtattctttattattattatagata
tttaaaaattgaaatttacaaaACATACAATATTTAGTTATGAAAGTACA
AAAAAAATGCAACAACATTAAAAAGGCGGTCCTGTAATCGCCTTTTTAAT
CATTTGTAAAAAGTTCTATGACAAttgtatcaaaattttaaacctttttt
tttggaGTATATACATTCctagtaattatcatttttgaaaattaggacct
tcatatttttttaaactttttaattcATATTTAAGTGTTTGGGTAATGTC
TTTCTCTATATCGAAATGGGATCGAAATTTCAGGAAACAAATTCAGTTTA
GATAGGCTGACTGGTCTATGTATTATGTGTCTTTTATTATATGTAAACAC
CATGCTAATTATTTCTTTGGAAATTCGATGTCTCTTTCGTTGGTCAAAAA
TTAAGCTgtccgatttaaaaaaaaaatcttgtatGACTAGTTATTTGTCA
CTTTGTATATTTTCTCATATAACTACTTAATTGAATAATGAAACAAAAGA
ACATTTTATTCAATAACATTTTcatgtaaaatatttcttatttatttgtt
tctttctatagatttcCTTACGTTATTTGTCTTCGTACTTAATTAGATAG
CTTTGTTAGAATTACGAGTTTATTTCCAAATAAAATGtataccttttcga
ccgtagccgctaaTTGCCGCGCCGGCATTTTTTTTGtctgctttatccca
ctaaaaccgtcccagtccttttttaacacctatagacaatagaaaaatgt
gtcaaaaaaggattgggtcgagtttagggggataattaaatgaTTAAGTG
GCACGTGCCTAACCACGCGgctacgatcgaaaaggtgtacAGATACCTAT
TTGCGGAAGGTTTATAAAGACTTTTACACTCTAAactttgattgcgtgaa
ttttGTAATGTCAGCTTTATCTAAGGTTGTACTTTATCTATGTTTGTATT
AATAGTTTCTGTTTCCTTAGCTTACCAGGTAAAGAGTGTCCGGGAAAAGA
GGAACATAATTTTCAGTGTGTGTTTTATTTGgtctttttaattattttag
tgttttttttatCACTGATCCTTTACCTTCTTCCTTTCAGAGACACTTTA
TTTGTTTCTATATTTCACTTattccattttgtttttgttttttttatcta
gGTATTGTTCCCATTGTCTAGGTAGAGTGTATATACAGGACCTCTCGTTA
ATTTTATtggttatttttctttaattttttttttacgatTCGTAGTGATT
CATATTATTATACTCTTTGCTTTTATCTCTCTAAGAATTTGTTATTATCA
AAAATGTAGCATACATAATATTCTTCATTATTAAGTACATGTTAATTTTA
TTTCCTCAATTTTTAACACCCTATACCGTTTTTAAGTTAATGATAATGTT
tacaaaagatatttttaaaagaaaactttgaaCGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000257:175836..187598+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017039 ID=TCONS_00017039|Name=TCONS_00017039|organism=Clytia hemisphaerica|type=transcript|length=11763bp|location=Sequence derived from alignment at sc0000257:175836..187598+ (Clytia hemisphaerica)
aaattatgtttttttttattcagctCGAAGTCGCTCTAATGGCTCAAGGC
TAGAAACTGGACTTGTACCAAGAAGACGAAGTAGACGCTTGAAGAAGAGA
AATGTAACATTCAAGAAGCAAGTGATGATGTCAGCAGATATACCATACAA
ATGCTCTGCTGCTCGAAGTCTTTTTGTTGTCAGATCATTGTCAGATTTAC
CAAATGAACTTTCCATTAAAATACTTGAGTATTTCAATGCAAAGGAATTG
ATTTCATTGAGATTGGTAAGAATAACAGTATAATCACTTGTTTGTGTTAA
AGTATGTGGATACCTTCATTTTGAATTATTAtccaaaaaatttttaacat
gtATCAACATTTCTCCAACCTAGTACAAAATTTatgaattaatttaaaat
ctaaTTATTTGAAAAGATTGGTATCTCttctgtgaaaatttaaaagtagT
TTTGGATTTTTAATTCACTATGCCCTATGCTTCATACATAGGATAATGGA
AAACCTACATTTTTACAGGCCACAAACCattttaaatgctttaaaatgcC
CATGACTTACTGTAAAACTGCAGCATGATAATTTCAAGCTCAAAATTCTC
CAAATCCCAACTACAAAATGGTATTGTCTCATCGTCACTTTTCAATCCAT
AGGTAAACAACCATTTTAAAAACCTTATTGATGGTACCCCAAGTATTTGG
TCAAGAGTTAGCTACCAAAACATGTGGCCATCAACGCAAAAAGACTACTC
CCTTTTCAGAAGGTAATACATTCATTTTTGATCTTCTTCTTGGAATAAAA
TTGCTGAGCCTACCTGGAgcatattcttttttttcttctgtagTTTAAAA
CCCACCACAGAACATTTGAGCTTTATGGTTAATTGCACTTTCATTTTAGG
GGTTCAAATCATGGAAATGTTGAAAGTCTAACAAAACTTGGCTTGTCTCA
TCTCTACCATTATAACTTAACAGGTTGGTTTAcaaatttgatgaaacaaa
gcacaattttcatttgctcttctttttttagaaaacacAATCCTTCCCTT
AGCAGCAAAAAAAGAGGATATTAGAGCTTTCTCTGTTTGTTGCTACAAAT
CCACTTAccacttttttacttttaggtataaacttcttaagagcagaaac
ttttgcgataTACATGAATTTTAACCCTTtttgcaaaagtaaatgtcttt
aaaatttcttgaagGGGTCATTCCTGAAAGTTTATGGGCATTATTCAAGG
AGGCGCTTATTAACCTAGGTCACTTTAGTAAAATGAATGGGAACCTCATT
TGTAACTTCCCAAGcaatttaaagtacctgaaaatcagaCCGGTCTTGGT
CTTATTACGAGCGGTCTAGTAGCGGCCAAGTCTTTGTTTAGATCGGCCTC
CAGACTTTCTAGAAACGTGATCTCTAACAGTCCTGGTCGCTTCTAGATGC
TTGTGGCCGCTTATTAGACTGGTCTAGGTTGCTTGTTAGACGGGTCCGGG
CTGTTTGTTAAATCGCTCCAAGCCGCTGGTTAGTGATTTTTAGTAACAAT
TAcatcaaaaaattgtaaaaggATGTCAACCGATCGCCCGGTCTCAGACC
AGACGCTTTGCAGCAACAGCTAAATTAACTAGACTCGTAGCAGCCTTTTG
GTTAGCAGCCTTTTGGTAAACTTTTTACTTTCCATTTCTTGCTTTGATAA
ATAGTTGGggaagaaaaaaacaagaaagacgTTCNCATTTCTTGCTTTAA
TAAATAGTTGGggaagaaaaaaacaagaaagacgTTCAAGAACACTCAAT
CAAAGCTGCAAACTACTTGCACAATCTGGATCTCAATATCCATCCCAATA
AACCGTTAACTTGGATGTTAATTCGGCCACCATGGTCTATGTCTAAAAGT
ATCTGCCTGAAACACTTGGTGCATACGCAAATGTTAACTCTCAAGGTATG
CTTTAGAATTTAATATTCCTTGCTTTTCTTTGATGATTTGCATCAGCCTA
ACTTTCCCTTgtaatgtcttatttttttggatAAATTAATGTATTGACTG
TACAACggtgctgcaaataaggaaaaGGAAATTTTTCAGTTGGCGGGTAA
TTTCCTTAATTTCAGATTGGCTAAAGACCTATTTTAATTTAAAGTTtgtc
ttttatttgaaagcGGTATGAAGTATCTAGTTGGGCTGAATAGAAATGTA
ATTAGCatgattaaaaataataaaagaactTTAATAAGCCTATAACTTAT
AATATTAACCTGACTGGTAATTACCagtcaccggccgttatttgcgGCAC
TTTAATGACTTGCGATTTAAAACTGAACTTTgagaaaaatagattttatt
taatTCTTCTTCCCTGTAGGAATCCAAAATGAATGGACCATTGTGTTATA
ACATTGGACGTATCTTCAACTTGGAATCagacaacaacagcaacaaagaa
aaatcaactgAAAACTTCCTACAATCTTGTGATCTTCGCTGCTCACATGC
AAAGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCAGCTGATGCTG
GAAAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGCTATGACAGGG
AATAAGGAAGCAATTTTTGAACTTGTTGGTTTTGCTTTATCAAACAATTC
ACTTTTTATTGAGGACATGTTGAATATGAACAAACTCTCGAAAAACTTAT
TTTCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACTTTACCAACCT
AAAATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGCTAGCAGAAGT
TGCTTATATGAAAGACATGTCACATGAGGTGTTACATGCAGCTGTTAGCT
ATGTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAACCAAATTGCAA
TTGTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAGTAAGTTTGGCCTTG
GGTCAATATATTCTTAAATTGCTTTCTAATGTTTCAATGAATGCATATCT
TTGTGATAAGTATCAAAAGTACATCATTTTGCTGTCAAGTGGAAATGATC
CAGATATGAATTTCCCTATACAATGTAGATAAGTGTTAAATAACATTGCT
TGATATAAATTTGGATGGCAAAATGGATTTTGTATTATTTATCTTCAAAA
CCAAGTATTTCACACATCAGGGGATCCTTTCGACATGTGCAAAATTCATT
TAAGCCTTCGCAATGCAATAATGAATTCTTTTCAATTGAAATATATCCTT
TTCATATCACATtttcaaatactttttaaaatgtttagaTCACATTATGA
TGCAAGACAAGTACACATTTTGACGGTCAGAGAATCATCATGGTTGACTG
ATCAAACCTACCAATATGAAGACGTTGTCAagtatataaatattttttca
tgagcTTGTGTTAGACATACATTTTTAATCTTTATGTCAACTTGAGTCTA
AAACGATTGCTTTGTGCATAGGATTTGAATCTAGCTTAATTTCAGAAAGA
ATTTTCGATTTATGTTTTGTATGTATGATTTCATTCACCTNCATTTCTTG
CTTTAATAAATAGTTGGggaagaaaaaaacaagaaagacgTTCAAGAACA
CTCAATCAAAGCTGCAAACTACTTGCACAATCTGGATCTCAATATCCATC
CCAATAAACCGCTAACTTGGATGTTAATTCGGCCACCATGGTCTATGTCT
AAAAGTATCTGCCTGAAACACTTGGTGCATACGCAAATGTTAACTCTCAA
GGTATGCTTTAGAATTTAATATTCCTTGCTTTTCTTTGATGATTTGCATC
AGCCTAACTTTCCCTTgtaatgtcttatttttttggatAAATTAATGTAT
TGACTGTAcaacagtgctgcaaataaggaaaaGGAAATTTTTCAGTTGGC
GGGTAATTTCCTTAATTTCAGATTGGCTAAAGACCTATTTTAATTTAAAG
TTtgtcttttatttgaaagcGGTATGAAGTATCTAGTTGGGCTGAATAGA
AATGTAATTAGCatgattaaaaataataaaagaactTTAATAAGCCTATA
ACTTATAATATTAACCTGACTGGTAATTACCagtcaccggccgttatttg
cgGCACTTTAATGACTTGCGATTTAAAACTGAACTTTgagaaaaatagat
tttatttaatTCTTCTTCCCTGTAGGAATCCAAAATGAATGGACCATTGT
GTTATAACATTGGACGTATCTTCAACTTGGAATCagacaacaacagcaac
aaagaaaaatcaactgAAAACTTCCTACAATCTTGTGATCTTCGCTGCTC
ACATGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCAGCTG
ATGCTGGAAAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGCTATG
ACAGGGAATAAGGAAGCAATTTTTGAACTTGTTGGTTTTGCTTTATCAAA
CAATTCACTTTTTATTGAGGACATGTTGAATATGAACAAACTCTCGAAAA
ACTTATTTTCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACTTTAC
CAACCTAAAATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGCTAGC
AGAAGTTGCTTATATGAAAGACATGTCACATGAGGTGTTACATGCAGCTG
TTAGCTATGTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAACCAAA
TTGCAATTGTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAGTAAGTTTG
GCCTTGGGTCAATATATTCTTAAATTGCTTTCTAATGTTTCAATGAATGC
ATATCTTTGTGATAAGTATCAAAAGTACATCATTTTGCTGTCAAGTGGAA
ATGATCCAGATATGAATTTCCCTATACAATGTAGATAAGTGTTAAATAAC
ATTGCTTGATATAAATTTGGATGGCAAAATGGATTTTGTATTATTTATCT
TCAAAACCAAGTATTTCACACATCAGGGGATCCTTTCGACATGTGCAAAA
TTCATTTAAGCCTTCGCAATGCAATAATGAATTCTTTTCAATTGAAATAT
ATCCTTTTCATATCACATtttcaaatactttttaaaatgtttagaTCACA
TTATGATGCAAGACAAGTACACATTTTGACGGTCAGAGAATCATCATGGT
TGACTGATCAAACCTACCAATATGAAGACGTTGTCAagtatataaatatt
ttttcatgagcTTGTGTTAGACATACATTTTTAATCTTTATGTCAACTTG
AGTCTAAAACGATTGCTTTGTGCATAGGATTTGAATCTAGCTTAATTTCA
GAAAGAATTTTCGATTTATGTTTTGTATGTATGATTTCATTCACCTTAAA
AGGTTGGATTTCGTGATGACAatgtaaatttctttttcttgataTTATTA
TCCATTTTTCAGGATGATGGGAGAGATTATTGGAGCATTTGCCGGTGATC
TATGGAAACCTACTTCTTGGAATTACCTGCATACCATTCTTGCTTTACCA
ATGGTACAAATTGTTTGCATTTTGAAACCTTAGCCAACGACCACCATAAC
GACTATAAGCTGATatcattaaaaataatcagTGAGCTTTATAAGCTCTG
GACAAAGCTGTCAACCATCTTTGATCAGATCGGGCTACACAGGCCTACTC
TGCAGAGTTGCCCGTTgttaggaaattaatttttgatctctttttgcttt
tttttttttgattttttcgctatCTTTTTCTGCAATGcgtaaaaaattaa
ttgaagCTGAAGGAACCGGTTAAGAAATACAGTATTGACTGTTTTTTTCA
GGCTGTACTATTATATATTGCCCttggtcaacgcaacaaccttgcaagct
cggtcgttacttgacctcgggcaatatttttcagtacagccctcacaaac
cggtcattattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCGGCCGTTATTTGCGGCACTTTAATGACTTGCGATTTAAAAC
TGAACTTTgagaaaaatagattttatttaatTCTTCTTCCCTGTAGGAAT
CCAAAATGAATGGACCATTGTGTTATAACATTGGACGTATCTTCAACTTG
GAATCagacaacaacagcaacaaagaaaaatcaactgAAAACTTCCTACA
ATCTTGTGATCTTCGCTGCTCACATGCAAAGTTTGAGCTTCTGTTGGCAA
GGAAAAATGAGATTTCAGCTGATGCTGGAAAGACCTTACAGTGGGTTCGA
GAATTGAGAGAATGTGCTATGACAGGGAATAAGgaaacaatttttgaact
tgTTGGTTTTGCTTTATCAAACAATTCACTTTTTATTGAGGACATGTTGA
ATATGAACAAACTCTCGAAAAACTTATTTTCCAATTGTCAATGTGTTCGT
GTTGACAAACTTGAACTTTACCAACCTAAAATAAATAGCTTAATGAGATG
TATCTTAGTAGATTGGCTAGCAGAAGTTGCTTATATGAAAGACATGTCAC
ATGAGGTGTTACATGCAGCTGTTAGCTATGTTGATCGTTACTTGATGTCT
CGAGTGGTTGAAAGAACCAAATTGCAATTGTTAGGAATCTCATGTTTGTT
GCTGGCGGCAAAGTAAGTTTGGCCTTGGGTCAATATATTCTTAAATTGCT
TTCTAATGGTTTAATGAATGCATATCTTTGTGATAAGTATCAAAAGTACA
TCATTTTGCAGTCAAGTGGAAATTACCAGATATGAAGTTCCCTATACCAT
GTAGATAAGTGTTGAATAACATTGCTAGATATAAGTTTGGATGGCAAAAT
GGATTTCATATTATTTATCTTCAAAACCAAGTATTTCACACATCAGAGAA
TCCTTTCGACATGTGCAAAATTCGTTTAAGCCTTCGCAATGCAATAATAA
TGAATTCTTTTCAATTGAAATACATCCTTTTCATATCACATtttcaaata
ctttttaaaatgtttagaTCACATTATGATGCAAGACAAGTACACATTTT
GACGGTCAGAGAATCATCATGGTTGACTGATCAAACCTACCAATATGAAG
ACGTTGTCAagtatataaatattttttcatgagcTTGTGTTAGACATACA
TTTTTAATCTTTATGTCAACTTGAGTCTAAAACGATTGCTTTGTGCATAG
GATTTGAATCTAGCTTAATTTCAGAAAGAATTTTCGATTTATGTTTTGTA
TGTATGATTTCATTCACCTTAAAAGGTTGGATTTCGTGATGACAatgtaa
atttctttttcttgataTTATTATCCATTTTTCAGGATGATGGGAGAGAT
TATTGGAGCATTTGCCGGTGATCTATGGAAACCTACTTCTTGGAATTACC
TGCATACCATTCTTGCTTTACCAATGGTACAAATTGTTTGCATTTTGAAA
CCTTAGCCAACGACCACCATAACGACTATAAGCTGATatcattaaaaata
atcagTGAGCTTTATAAGCTCTGGACAAAGCTGTCAACCATCTTTGATCA
GATCGGGCTACACAGGCCTACTCTGCAGAGTTGCCCGTTgttaggaaatt
aatttttgatctctttttgcttttttttttttgattttttcgctatCTTT
TTCTGCAATGcgtaaaaaattaattgaagCTGAAGGAACCGGTTAAGAAA
TACAGTATTGACTGTTTTTTTCAGGCTGTACTATTATATATTGCCCttgg
tcaacgcaacaaccttgcaagctcggtcgttacttgacctcgggcaatat
ttttcagtacagccctcacaaaccggtcattattgcattagagtagtgct
accatttaggtaccactttcaaaaaactctgatcaaaggTTTGGTTGGCC
AAGACAGAGAGACTGCCTCAAGAGCCTTTGTAAAGCTCAGTTAAGATAAT
ATGTATTATgtgcaaataaaaaataataatccaGGCTTCACATTGATTCT
TGTCAAAGTCAACTTTTGTAACTCAAAGTGCAAGAACACAACCGGATTTG
TGGGGGATGTACTATTGAATTttactttgatttcttttgttcaCGTTTTA
GATTGACGATACATGGAAATCTTGTTGTCATTATGTTCATGATTTAACGC
TGCAATTCACTTTGTTTGGAAGGTAATTTTAAATCTTGATTTTCTTAGGG
AATCTGCTACGTTAATTTCAATATATAAATTAGGTTTTAAAGATTACATT
TAATTTTCACGAGATTCAATTTTCTGATATATATTTTTGTGAATGAAGAA
AAAATCAGAGAAGTTGAAATGGTTCTGAAAgcgaaaacctgaaaattaat
CCCATGAAAATTAATCCCGCGAATGTTAATCTGATTACagtagaaaataa
aaaaccaGAGTAAATGTTCAGAAGTTGAAGCTAATGATCAAAAGCCAGGC
ATTTCGTATGTAAGAATCCTAATGGTAATAAAGGCActctcaaaaatgtt
tttcttcttccAGCTACAAACCGTCTGTTGTTGCTTGTTCATCTTTATTC
TTAGCTGGTCTCATCTTGGACAGAGGTATGgtttttctattcattttctc
aattttcgtGCATTAAAGCGTGTGTTTATAAAAAACCACCACATAAAAAC
AGTTGTTACATGATGTCTGTCTGATCTGTTACCATTCTTTTTTCTCTGAT
TTGCTttagtttgttttgatctgatttcagttgttttgttttcagaaaaa
tcgaTTGAAAGAAGCCGACAGCATTTTTTTTACCCAGTCTGAAAGTAATG
ATTTTTATCCAAGTTAGATAAAGAACTAAAAGAAAAGACCACAGCCAGTC
CTGACTATAGTATACAAACCGATTATGTGTTATTATACATTTTTTCACTC
TCTCACTCTCTCTCACTCTCTCGTAGATAACTCTTGGCCATCAGAACTGG
AagaagttactggatttcacgTCAAAGATATTGCTAACTGTGCATCCCTT
ATCCACTATAAaaggtgaaaaagaaaattcgttTCTCCTTGAATTTGGAG
CAAAAGAAATTTGGGGCTATTgcacaaaatttgaaatgataaaatgatat
tttaacaaatcatatttcaacattttttttcagcTTCACCTGCTCCTCAA
TGAAGGATGACCGTGGTCTGCCACTTGAAAGCATCAAAGCTCGATACAGG
AGTCAACGAATGCATTGCATTGCTTCCCTTCCTTTACAAGATGAGAACAC
GTTGAAAAGCCGCATATTATCCACTGACAGCACATTATCATGTGCATCGC
AAGAACCACTGCAATTTGTCGTGTTGTCTAATGACGTTGATGAAACGTTA
AACACGAGCATCAAAAGTGTTGATTATGATGGAGACAGTGAATGCGAAGT
TGATTCtgaaagtgattttgatgagagTTTTTGTGTTGGACGCAGTCGGT
TATCATCTTACCATTCAGTAGAAGAATTCTCAGACGACGAAACCACCATG
GATGCTAGCAGTTTCAATTTCCGTGATCCTGATAACAGTTTACCACCTAA
AGAGAGCTTCACGCCAATCTTTAATAAATCGCATAACTCCTCTGCAACCA
AAAGGAACTCTTTCTTTGATGGCGtggaaaatcatgaaaataagGTCACC
GGTTTTCACGGGCAATATTTGGAACCCTTGAAATATGCAGGTGCGCAAGG
TTCACATGATAAAGACTCGCCCAACAAGCTCGATGCTGCTTGTGGTACGA
CAAAACCGTCCACAAGTCGCCACCAAAGCCCTAAATACCAACCATATCAA
CCATGTTCTAGCCGCTATGATCATGTCGGAAGGCGGACTCGTTCAAGTTG
TACACGCAGGTGagagaatttcaattttttgcttaGTGTACTTTTtagtt
tccttttttttaaattcaactgTAGATATGTAAATAGACCTATTCACAAT
TGAGAAGTTATTTTTATCTCTAGGGAAATGACTGACTATCTTATCCATCT
TTTGAGCGTGAATATTTTCActaaattcttgaaaatgttattCACAATCT
CTGTAGTACAAGTAGAAAGCTGTTGCAATGGTATCTTAGAGAAGTGGGCT
TGTCGCCGTGTTTGGGGCGCTATCTTCTTGGGTGATTTTAAAGATTGCAG
ATTTTACCTTTATTAAAAATGCGTCTTAAAAGTGGATTCATAATGCGAAA
AGTGTATATTTTAGTCACCAAATATGTCATGTGGGATGTTAGagtaaaaa
ttatatatatccTTACtatttcttaacattttctagAAGCTTTTTCGGCT
AtattctttattattattatagatatttaaaaattgaaatttacaaaACA
TACAATATTTAGTTATGAAAGTACAAAAAAAATGCAACAACATTAAAAAG
GCGGTCCTGTAATCGCCTTTTTAATCATTTGTAAAAAGTTCTATGACAAt
tgtatcaaaattttaaacctttttttttggaGTATATACATTCctagtaa
ttatcatttttgaaaattaggaccttcatatttttttaaactttttaatt
cATATTTAAGTGTTTGGGTAATGTCTTTCTCTATATCGAAATGGGATCGA
AATTTCAGGAAACAAATTCAGTTTAGATAGGCTGACTGGTCTATGTATTA
TGTGTCTTTTATTATATGTAAACACCATGCTAATTATTTCTTTGGAAATT
CGATGTCTCTTTCGTTGGTCAAAAATTAAGCTgtccgatttaaaaaaaaa
atcttgtatGACTAGTTATTTGTCACTTTGTATATTTTCTCATATAACTA
CTTAATTGAATAATGAAACAAAAGAACATTTTATTCAATAACATTTTcat
gtaaaatatttcttatttatttgtttctttctatagatttcCTTACGTTA
TTTGTCTTCGTACTTAATTAGATAGCTTTGTTAGAATTACGAGTTTATTT
CCAAATAAAATGtataccttttcgaccgtagccgctaaTTGCCGCGCCGG
CATTTTTTTTGtctgctttatcccactaaaaccgtcccagtcctttttta
acacctatagacaatagaaaaatgtgtcaaaaaaggattgggtcgagttt
agggggataattaaatgaTTAAGTGGCACGTGCCTAACCACGCGgctacg
atcgaaaaggtgtacAGATACCTATTTGCGGAAGGTTTATAAAGACTTTT
ACACTCTAAactttgattgcgtgaattttGTAATGTCAGCTTTATCTAAG
GTTGTACTTTATCTATGTTTGTATTAATAGTTTCTGTTTCCTTAGCTTAC
CAGGTAAAGAGTGTCCGGGAAAAGAGGAACATAATTTTCAGTGTGTGTTT
TATTTGgtctttttaattattttagtgttttttttatCACTGATCCTTTA
CCTTCTTCCTTTCAGAGACACTTTATTTGTTTCTATATTTCACTTattcc
attttgtttttgttttttttatctagGTATTGTTCCCATTGTCTAGGTAG
AGTGTATATACAGGACCTCTCGTTAATTTTATtggttatttttctttaat
tttttttttacgatTCGTAGTGATTCATATTATTATACTCTTTGCTTTTA
TCTCTCTAAGAATTTGTTATTATCAAAAATGTAGCATACATAATATTCTT
CATTATTAAGTACATGTTAATTTTATTTCCTCAATTTTTAACACCCTATA
CCGTTTTTAAGTTAATGATAATGTTtacaaaagatatttttaaaagaaaa
ctttgaaCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009528XLOC_009528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017039-exon-sc0000257-1491911889:175836..176100TCONS_00017039-exon-sc0000257-1491911889:175836..176100Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:175836..176100TCONS_00017039-exon-sc0000257-1510915933:175836..176100Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:175836..176100TCONS_00017039-exon-sc0000257-1575043694:175836..176100Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:176488..176597TCONS_00017039-exon-sc0000257-1491911889:176488..176597Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:176488..176597TCONS_00017039-exon-sc0000257-1510915933:176488..176597Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:176488..176597TCONS_00017039-exon-sc0000257-1575043694:176488..176597Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:176735..176808TCONS_00017039-exon-sc0000257-1491911889:176735..176808Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:176735..176808TCONS_00017039-exon-sc0000257-1510915933:176735..176808Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:176735..176808TCONS_00017039-exon-sc0000257-1575043694:176735..176808Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:177593..177780TCONS_00017039-exon-sc0000257-1491911889:177593..177780Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:177593..177780TCONS_00017039-exon-sc0000257-1510915933:177593..177780Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:177593..177780TCONS_00017039-exon-sc0000257-1575043694:177593..177780Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:178205..178770TCONS_00017039-exon-sc0000257-1491911889:178205..178770Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:178205..178770TCONS_00017039-exon-sc0000257-1510915933:178205..178770Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:178205..178770TCONS_00017039-exon-sc0000257-1575043694:178205..178770Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:180930..181022TCONS_00017039-exon-sc0000257-1491911889:180930..181022Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:180930..181022TCONS_00017039-exon-sc0000257-1510915933:180930..181022Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:180930..181022TCONS_00017039-exon-sc0000257-1575043694:180930..181022Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:181248..181338TCONS_00017039-exon-sc0000257-1491911889:181248..181338Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:181248..181338TCONS_00017039-exon-sc0000257-1510915933:181248..181338Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:181248..181338TCONS_00017039-exon-sc0000257-1575043694:181248..181338Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:183937..184007TCONS_00017039-exon-sc0000257-1491911889:183937..184007Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:183937..184007TCONS_00017039-exon-sc0000257-1510915933:183937..184007Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:183937..184007TCONS_00017039-exon-sc0000257-1575043694:183937..184007Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:184349..184410TCONS_00017039-exon-sc0000257-1491911889:184349..184410Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:184349..184410TCONS_00017039-exon-sc0000257-1510915933:184349..184410Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:184349..184410TCONS_00017039-exon-sc0000257-1575043694:184349..184410Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:184762..184849TCONS_00017039-exon-sc0000257-1491911889:184762..184849Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:184762..184849TCONS_00017039-exon-sc0000257-1510915933:184762..184849Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:184762..184849TCONS_00017039-exon-sc0000257-1575043694:184762..184849Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1491911889:184969..187598TCONS_00017039-exon-sc0000257-1491911889:184969..187598Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1510915933:184969..187598TCONS_00017039-exon-sc0000257-1510915933:184969..187598Clytia hemisphaericaexon
TCONS_00017039-exon-sc0000257-1575043694:184969..187598TCONS_00017039-exon-sc0000257-1575043694:184969..187598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:175836..187598 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0688907	0.00156298	0	0.000395751	0	0	7.68946e-08	0	0.00109711	0.00257955	3.47154e-08	3.49261e-07	0.0287776	0.00326251	2.10145	0.0573229	0.00982767	0.1651	1.50474	0.150014	0.870071	0.0405645	0.0894462	0.119826	0	0	7.22566e-08	1.90793	0.000571726	0.607829
Blast
[Close]
BLAST of TCONS_00017039 vs. Swiss-Prot (Human)
Match: CCNF (Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 4.003e-71
Identity = 161/499 (32.26%), Postives = 279/499 (55.91%), Query Frame = 2 
Query:  197 LPNELSIKILEYFNAKELISLRLVNNHFKNLIDGTPSIWSRVSYQNMWPSTQKDYSLFRRGSNHGNVESLTKLGLSHLYHYNLTVGEEKNKKDVQEHSIKAANYLHNLD-LNIHPNKPLTWMLIRPPWSMSKSICLKHLVHTQMLTLKESKMN--GPLCYNIGRIFNLESDNNSNKEKSTENFLQSCDLRCSHAKFELLLARKNEISADAGKTLQWVRELRECAMTGNKEAIFELVGFALSNNSLFIEDMLNMNKLSKNLFSNCQCVRVDKLELYQPKINSLMRCILVDWLAEVAYMKDMSHEVLHAAVSYVDRYLMSRVVERTKLQLLGISCLLLAAKSHYDARQVHILTVRESSWLTDQTYQYEDVVKMMGEIIGAFAGDLWKPTSWNYLHTILALPMIDDTWKSCCHYVHDLTLQFTLFGSYKPSVVACSSLFLAGLILDRDNSWPSELEEVTGFHVKDIANCASLIHYKSFTCSSMKDDRGLPLESIKARYRSQR 1684
            LP ++   IL++ + ++++++R V++  K+L+D   S+W+  S+Q +WPS   +  LF R +  GN E+  KLG+++LY+  L+V +E      + + +KA+ +    + LN+    P  W+ IRPPWS+S S C K +VH  +    + +      + + +GR+ +L  D    ++++ + F ++    C  + + L  + +    +D G+ L   R+LR+ A  G  EA   L     + N L +E +   +++   LF   Q V   ++   Q  +N  MR IL+DWL EVA MKD +   LH  V  VDRYL  R+V R +LQLLGI+C+++  +  + +++  ILT+RE+ WLTD TY+YED+V+MMGEI+ A  G +  PT  +Y   +L L  ++   +  C ++ +L+L  T   +Y P+ +A ++L LA L   +   W ++L ++TGF  +D+  C   +H K F   + KD R + L ++K R+  +R
Sbjct:   35 LPEDVLFHILKWLSVEDILAVRAVHSQLKDLVDNHASVWACASFQELWPSP-GNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSDEAR---AEVNGLKASRFFSLAERLNVG-AAPFIWLFIRPPWSVSGSCC-KAVVHESLRAECQLQRTHKASILHCLGRVLSLFEDEE-KQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLE-VRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACMVICTR--FISKE--ILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKR 521
The following BLAST results are available for this feature:
BLAST of TCONS_00017039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNF4.003e-7132.26Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2[more]
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