|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017040 ID=TCONS_00017040|Name=TCONS_00017040|organism=Clytia hemisphaerica|type=transcript|length=2670bp AATAATTATGATATAAAATTTCGCACAAGTCAGctgaaaaatgacaaata atGTTTTAAAAGGATATAAAAAGAATAATGCAATAATGTGATTAATTATC AGCTAAATTTATCATTCACCATGCTGTTACATAAATCATGCATGATCGTA GTTTCTTAGTTTGGTTAGTTTTGAAGTTTGGTTATCAAACAACGTGCAGA CAGAaagattttaattaaaaaacatCTCAATGCAAGTGCAACATGATGGT TTTATCATTACTTGGAATGTTaacaaacataatttttttccttcctgTGG TCCTTTTCATATTGATTGCttataatttattgaaaaattacaTTGCATGC AACAAGCTGAATAGGCATGGGGGATCTTACAAGAAGATTCCAGAACCAGC AAGCTTACCAATTTTGGGACACTCCATGTTTATTTTTACAATGAAAAATC AAGATGAGTTTAATTACAAACTTGGAAAACAGTTTGAAGAGTATGGTGTC TATCGCATACGAAATACACTTTTGGGAATGAATTTGGTATTCGTTTTGAA ACCAGAATGGGCCAAATATATATTATCAAGACCAGACGAATTTCCACGTG GTGAATTTCTACCAAAGTTTTTTCCACTTCTTGGCAAAGGATTATTGACT TCAGATGGTGATCTGCATCGTTTCCAGAAAAGAGTGCTTGCAAAAGCATT TACTACGCCACAacttcaaaaatatgttccagtATTTGATCGTCACACCA AAGATTTTGTTAAGaaATTGATATCGATCATCGATAGCAAAAAAGATGGT ACCAACATACCGATCCGTAAATATTCAAATGTCTTTTCCTTCAACACCAT TGCTGAGATTGCTTTTGGTTATAAATTCAGCGAGAAAAGCTCCAATACTT ACCTTAACGCTATCCAACAACAGACAGAATCACTGAAAAACTGGAAAGGC CGTGTTCTACTCAAATTGGTACCGTTCTTGAGATATATACCCGCAATTAA TAAAATGGTGACTGCTGAAAATGGAAGACAAGTTCTAGCTGATGTTTTGT TAACGCGGAAGCAAAAAGTGGAAACAGACTCATTAacggaatttgagaaa aatgacATGTTGTCAATTATGATGAGAGAGCGGGACGAAAAAACGGGACA AATATTCACAGATCAAATGATACAGGATGCATGTTTCACTTTTATGTTGG CGGGATATGAAACAACAGCAAGTGCGATCCCTATCGTCCTCTATTACATG GCGAAGTATCCCAAAGAGCAATCCAAATGCCGAACAGAAATAATGAACGC CATTCCAACGCCCAACGACACCATGAATTTTAAACACCTTGATCTACCCT ACACGACCGCCTTCATTCGGGAAACGTTACGCCTTTTCCCGACAGTCAAC GGTAATGGCCGAATGTGCGGTAAAGACACGACAATTGAAGACTATTTCTT CCCAAAAGGAACGCACTTTGCATTCAGTAACTACTTCTTAAACAGGGATC CAGAATTGTTCGACTACCCGGATGGTTTTCTACCGGAACGTTTTCTTCCC GATAGTGGTATAAAATGTGGCAACATCCTAACCTTTGGTTATGGACCTTT CAATTGTATTGGGAAGAACTTCGCTATGTATGAGCTGAAAATTGTTACAG CGCGTTTATTACAACATTTTGAGGTCGGTGCATTAGACGAAGGTTATGAG GAATTTAATAGGAGACAAATGTTGACCGTCCGACTGGACCCAGAAATTCA CGTACGCTTAAGGACTTTGTAACTTTCGAGCTTGCACATAACGTTTTTGT GATGTGTTTTCTATATCGATGTTTGATCGGTGATTACGGGATAATGACGC ATCTGAAATATTCCTATTTAAAATTAAAGGCTTGGGAcacgaaaagtttt tttcgcgttggtgcaatgcaacatgctctatcccactAACACCAGAAAAA AAGTGCGTATACTATGgtttcttttattgtttcacgggacaaaaatcgag ggaaatacccaaaagacacgctgattttgtccctgggacaatggagtaAA ATCTTTTCTAATCGATTTTGTTCCATTGACCCaaggacaaaagtgagaga agcacaaatgttattaaaagaaaaatgggtggagacacgagaaagcgttt caggttagtggaatggagcatgttggattgcaccaacgcgaaaaaaactt ctcgtatCCCCAAGCCTTAAACCTTAATGGAGATTTTTTTATATGTTGGA GCTGATTACAAAAAGCGAACATAATGCATTATTTTCTTATTACCTGAAAG GTATTAAACGAACTGCTTTTATTTCCGAGAAAAAGGATGACATAAAAAAT GTCCTCTCTTGTTTTTTTATTCGTTGTTTGATGGCAACCTTGATTACAAC TTTATACCATAGACCATTTACATGATTTTGGTCTAAAAAAAGCGATGAGG ACATATAAAGACGAGAAACACCTATTATTTTGGGACAAGTGACATGTTTT ctataaaattatgaaaaatattaaaactaTTTAATTTAAACctctaaata tttttgttgtaAGATAAATATACCTATAAACCATTCAAAATGGTAAATTC ATTTCTGCACTCTTTGTAACAGATATTCAATATCACTTAACCTTTTGTTA ATAAAATAACTTGAACAGAT Run BLAST on NCBI protein sequence of TCONS_00017040-protein >TCONS_00017040-protein ID=TCONS_00017040-protein|Name=TCONS_00017040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MMVLSLLGMLTNIIFFLPVVLFILIAYNLLKNYIACNKLNRHGGSYKKIP EPASLPILGHSMFIFTMKNQDEFNYKLGKQFEEYGVYRIRNTLLGMNLVF VLKPEWAKYILSRPDEFPRGEFLPKFFPLLGKGLLTSDGDLHRFQKRVLA KAFTTPQLQKYVPVFDRHTKDFVKKLISIIDSKKDGTNIPIRKYSNVFSF NTIAEIAFGYKFSEKSSNTYLNAIQQQTESLKNWKGRVLLKLVPFLRYIP AINKMVTAENGRQVLADVLLTRKQKVETDSLTEFEKNDMLSIMMRERDEK TGQIFTDQMIQDACFTFMLAGYETTASAIPIVLYYMAKYPKEQSKCRTEI MNAIPTPNDTMNFKHLDLPYTTAFIRETLRLFPTVNGNGRMCGKDTTIED YFFPKGTHFAFSNYFLNRDPELFDYPDGFLPERFLPDSGIKCGNILTFGY GPFNCIGKNFAMYELKIVTARLLQHFEVGALDEGYEEFNRRQMLTVRLDP EIHVRLRTL Run BLAST on NCBI transcript from alignment at sc0000257:192214..200194+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017040 ID=TCONS_00017040|Name=TCONS_00017040|organism=Clytia hemisphaerica|type=transcript|length=7981bp|location=Sequence derived from alignment at sc0000257:192214..200194+ (Clytia hemisphaerica) AATAATTATGATATAAAATTTCGCACAAGTCAGctgaaaaatgacaaata
atGTTTTAAAAGGATATAAAAAGAATAATGCAATAATGTGATTAATTATC
AGCTAAATTTATCATTCACCATGCTGTTACATAAATCATGCATGATCGTA
GTTTCTTAGTTTGGTTAGTTTTGAAGTTTGGTTATCAAACAACGTGCAGA
CAGAaagattttaattaaaaaacatCTCAATGCAAGTGCAACATGATGGT
TTTATCATTACTTGGAATGTTaacaaacataatttttttccttcctgTGG
TCCTTTTCATATTGATTGCttataatttattgaaaaattacaTTGCATGC
AACAAGCTGAATAGGCATGGGGGATCTTACAAGAAGATTCCAGAACCAGC
AAGCTTACCAATTTTGGGACACTCCATGTTTATTTTTACAATGAAAAATC
AAGATGAGTTTAATTACAAACTTGGAAAACAGTTTGAAGAGTATGGTGTC
TATCGCATACGAAATACACTTTGTAAGTTTAACTGGACAACATTCATACT
AAGCAACTACCTCGAAACAACTCTAAATGATCCTTAGATTAACTCATAAt
tgataatagaccttttttcaaagaggacgtcctgttgaataattatgtag
tccagccataaaaacaatgatagagccatgcataattactgtatcatgta
tattgtaataattatgcatggttttatcattatttttcttgctgggctac
ataattattcaacagggtggcctctttgaaaaaaggtctattgtgagaAT
TCCATGACCATGCATGACAACCTGATCCAAACAGCAAAACCCACTGTCAG
ggaattttctcaatttttcatgatttaGATATATGAccaccgtaacttgg
tctaatgtctaCACCCCTCCTCTGATTTGgagcgacaccctttttatcag
acTGTCAgatgaaattgatagaaaggttgttgaaactgtttttctttgct
taatggtcagagaggaattattatttttcgcaatcagtgattcaagcttt
catattattcctgtcccTAAAAAAGGGTATTGCTAttggaattagacgag
ggatgtcgatattagaccaccTTACGGCATTTTTGCAATTGTAGACCATT
TGCTAGATCAGGATGAGGTGTGGGTCTGAATATATATAGTGTCGTTATGG
AGAACGCGAGTGTCTTttgaatagttgttttggagaacatGACAGCATAG
GTTTTTGGTTTGGCAGTTTTTGGTGTCCACTGAAATCTACTTAGTCTAgt
taggcgaggccaatttaaatTTGTTGTTTCACGGGCCAAGCTACTACCCA
AAAAAAGAAGGTCAGTCGTTctgcgaaaaaataaaaataaaaatataatt
tcaccTATAACATGTATATATAATgtatcttgacaaaaatgcgaaataga
aaataaaaagacataaaaaagttgaattcatggataaaatggaaaattga
gtaataaaattatcaaaacctTGGAGAAActactaaaattttgaaaattt
ggcactCTGTAAAGCTATATGGCAGTATggaaataaaaatgtactaccaa
aatcaattttatttttatttcgatctttaaaattttagggtcaGTTGAAC
CTgcaaaacaactaatcaaaacCTTACTGCAAGAAAATTTTGGGGATGGA
TAGCATATGAATATAtcaacatatcaaaatcaaattcctagattattttg
atatattttttgcaaaaccAGAAAAGTTTTTCCAAAGTGACGTCTGAATT
TCcagtcaaattttcaatcaattgaAAATTGGTAAACTTAGACTAAAAAT
AAGTCCTTTAAACTAGGATCAGTTTTAAAACCCTGTCTATTCTGAACATT
TTGCCAAAAGTTTAAGTAACAAACAAGTTCCTTTAGGCTCATGAGGTATc
agaaagaaaacaataaaTCTATCGACATTTTTTGGGGTGCTTCCAAGTTC
CAGCCACAAAATTTTGGTTCCAGCCACAAAATGTCATAATTGTTGTCATA
ATTGCCCGGCATAATTGTCATAATTAAAAGCTCTAgtattaaaacaatga
aacatttttaatggCACGATTATCAAAAGTGTATATaagtttttattatt
attattagtttggtgctggagtttttaattatccaGCAGGACATCCTGAT
TAGCAAAGGTCTATCTTAATTACTAAGAAGTTATCGAGGCTTTCAAAAGT
CTCATTTCTGGAAAATCTGAAATAGGTTCATTTTAAAGCATACCAGTAga
ccgaaatatttttttctagattAGCAGTTTTTGTCTAGAAAGTATGAccc
taaaaatttaattttttatcctTGCTGATGATATTCTCACTGGTTCATTG
ACTTACTTTTGACTTAACTAATGTTGACTGTTGGCTTTTTTGTTTAAGTT
TGTTTCCAGTTTGTTGAGGAGATCAATAGTTCTCCTAAGACTAAATTTTA
GAAACACTTGTATCTAATCCTAGCCATTTTAAGCGGTCATTATGCAGTTA
AGATTTGCTCAGAGTttattttttgcaaatattaGGTATTTCCACAGTGT
GTTAGCTTCCTTTCTTTCTTCCCTTTTTGATGTCAGGAgttaacaaaatc
ataaaacttTACTTGTTTTTCACGATGAAGtccaaaagaaataaaattaa
ggATCGGTGGCTTTACGATAAAGTTTACTTGCAATAGACAACGCAACGAT
CACAAAAGTTCGTTATTACTAAGCTCTGGTAATTTTCCGAGATCCTATGC
TATTAACTGGCAACTTTTGTATTgaagtgctattttttgagttatttctt
ttgaaagaaaatatttatcctttatcaaaaatattctgAGTATTTTCTGT
ATCGTTTTTTCTAGTGGGAATGAATTTGGTATTCGTTTTGAAACCAGAAT
GGGCCAAATATATATTATCAAGACCAGACGAATTTCCACGTGGTGAATTT
CTACCAAAGTTTTTTCCACTTCTTGGCAAAGGATTATTGACTTCAGATGG
TGATCTGCATCGTTTCCAGAAAAGAGTGCTTGCAAAAGCATTTACTACGC
CACAacttcaaaaatatgttccagtATTTGATCGTCACACCAAAGATTTT
GTTAAGGTAAGAATTCGTTCTTTAAAATCATTTACAAAGTTTTGTACACA
TAATCCTAAGTTCACTTTTTACGTTTCTGATTAATTCTCATTAAAAGTGT
ATGTTCTATGATGATGACGAGATAAAATATTATCTCTTTAACTTTGATTC
TTTGCCCTTCAATTAAAGAAAACATTCACTTTAATGTCAGAATTTTCTAA
CCGAGTCTCTTGAGCATTACTGCGGGCGtaaaataaacttttgcgagcaa
AAACTTTGATGAGTTCGAACATCCGGAAAGTCGCGAAATTTGCGACattt
ttttcggatttttggaTAAACCTTTGCGAATCATTGGATaagaataagaa
aaatttacagaaaataatcaaatgccTGAAATCGACAGAAATGTTGTTTT
TCAACTTCAAGAGGGTGTTAGAGGCTAATAATATCAATCTCATCCCAGTG
TATTCCAGGATTTTTAACGTTTCTGATGGACGTCAGAGAATATTATCTGG
CACTATCAGTAAGTGTCATAAAGCTGATGATGCACAGGGAACGAAGTTGT
AAGAATATACAAGAACCTTTTGAGTATAAAACATTTGCGAATCTCTTGTT
ACGAAATTTAAAGAGGTTTTCAGGAAAAAAGACCAAGAATCACGAAAGTT
TCTGTTgttgaaagtttgtacgcccaAAATACAagttaagatttttttta
tttcaatttaattttcgtTTACTTTCAATTTTCGAAGAATTTAGAAAAAG
AACTTTCTAAGGTTTTTAATCATGCTTATAGACAACATCATAtcagaagt
ataagaaaaagtCGGGAATAAGAATGCTTGATTATTTATTCTTCTGGAAC
CCTTCAatttacataatagatttttttccaatttaaattttattgaagaa
ATTGATATCGATCATCGATAGCAAAAAAGATGGTACCAACATACCGATCC
GTAAATATTCAAATGTCTTTTCCTTCAACACCATTGCTGAGATTGCTTTT
GGTTATAAATTCAGCGAGAAAAGCTCCAATACTTACCTTAACGCTATCCA
ACAACAGACAGAATCACTGAAAAACTGGAAAGGCCGTGTTCTACTCAAAT
TGGTACCGTTCTTGAGATATATACCCGCAATTAATAAAATGGTGACTGCT
GAAAATGGAAGACAAGTTCTAGCTGATGTgagtattatttttttaataaa
attaagaGGCCCAGAAGTATGACACCCGTATCGTTGTCAAGGATGTCTTG
CTGATGTTCAAACAaataaaggttttatttttacataagtgttcccgttt
catatcagatacatatttcatatcaggacagtgtctgcctattgttatat
tatgctgatataaggaaaaaatgttttttcttttcctctttttaaccaat
cttgctccacatccgtgtcaatccattgtgaaaaagcttgttaattaaaa
ttgatgagtaagcaaacgataacACTCTTATTTAAGAACAAAGCCTTTAA
ACCCTTGAGTGTGAATCGTTTAAATCTTTCCAGAAAGCacaattgttgtt
tttattttgttgcgGTTGTGTCCTTTTGAAGCGACTGAGATATACTGTGA
TCCGATCTAGAACACATGTAAGAAAAGACCCCCTTTCCAACCTTTCCAAC
GGCACTCCTCTCCTAGAGAGAAGTAATCATTATAATTTGGTCGGTGGAAA
TTGgtccttttgttttgaaagtctAGAAAACATAATATTAAAAAGaactt
tataaaaaagtttgtggaAACCGTTCTCAAGAAAATTAGTCTTATTGTGC
GTGGTTTCTGTaaggaattaaaaaaaagagtaCACGCTTGATTCGAGTAG
ACTACAGTGTGttccaaaaaagtaaaatcctcattaTTTATGCCGaattt
tatgacttgtataCTTCATATATCAAAAACCTATTCCATCATCTTTGGAA
TTGAATATCAattgattgaacagagaattGAATCTTATTTCGATTATTCT
TTCaagtttaaataattttaagttGAGAGTTTTGAGGGTTTTACTTTATA
TAGAAGTTTGTCAGCTTTTTTGGGACATACTGTAGAATTTTTATTACAGA
TTTTGTTGACACACGTGGaaattgttttcaagaaaatttgtCGTGGTTTC
TGCAAGATTGTGAGTGTCCACTTAATGAATAGACTATAACTTATATTACA
GGTTTTGTTAACGCGGAAGCAAAAAGTGGAAACAGACTCATTAacggaat
ttgagaaaaatgacATGTTGTCAATTATGATGAGAGAGCGGGACGAAAAA
ACGGGACAAATATTCACAGATCAAATGATACAGGATGCATGTTTCACTTT
TATGTTGGCGGGATATGAAACAACAGCAAGTGCGATCCCTATCGTCCTCT
ATTACATGGCGAAGGTAAAATAAAGTCATTAATTCAGTGTATTTGTAGAC
GAACAAGGTCACCTAAAATGGGGAAATACTTTTAAGAAATGGGAAACCTG
CCTCTTATCATTAATCTTATTTCAGCGCTACATTTAATCTCGTTTGTAGC
CGAATCAAAAGGGGAAATACTTCTAAGACAACCCGCAGCTAAATAAACAG
TGATCGATATATTTGGTACTTTTATTCTCACAAAATTTCAATTATCGAGC
ATATTTTGAGTCTCAATCAATAATTTCAAATTCctcaattttttctttga
aattatctttttaGTATCCCAAAGAGCAATCCAAATGCCGAACAGAAATA
ATGAACGCCATTCCAACGCCCAACGACACCATGAATTTTAAACACCTTGA
TCTACCCTACACGACCGCCTTCATTCGGGAAACGTTACGCCTTTTCCCGA
CAGTCAACGGTAATGGCCGAATGTGCGGTAAAGACACGACAATTGAAGAC
TATTTCTTCCCAAAAGGAACGCACTTTGCATTCAGTAACTACTTCTTAAA
CAGGGATCCAGAATTGTTCGACTACCCGGATGGTTTTCTACCGGAACGTT
TTCTTCCCGATAgtaagatatttttgtttttactttataaTAGACTATGC
TATGGTCAATGACAAATCACTTTAAGGACAGAAACTTTCGCAGGTagatt
ttgatcctttttcgcgaaagtttctgccaggtaaaaaattaaacctgaaa
aacgcgaaagtttttttcgcgaaaattaaacTTTACTACtcagttttgca
ctgtttgctaaatttttgcatgttttatgagtttttgttaccaaataagg
taaattttatatggattcgcgaaagttctacctgtgaaatttcggctaaa
accataattcgcgataatttcacgattttttgacttcgcgaaactttctg
aAGTAAGCCcaaaccggaaaaaaattttcaaacgggtttttttgccgaaa
agtaacagacgataacatcgtctaactTTATAATAGAGTTGACCCCCAAC
AACTAGAACAGTCAATAAGGTTCTATACTGATTTGAAGACAAAGATTGTA
CACCAAGCAAAGACTTTAAAGAATCGCACTTTATGCGAAGAGAAGAAATC
TTCTAGTCTTGTTTGCATACATCTCtatcttctataagaaacttttccGC
TTAGACTTGGTAATCAAAGGAAAAAATAATGCCAGCtcatcatatttttt
tcttctgccAAACTTACTTATTCTAGGATAGGAGGATAAAACTATCTTTT
CTATGTTCTTCACAGGTGGTATAAAATGTGGCAACATCCTAACCTTTGGT
TATGGACCTTTCAATTGTATTGGGAAGAACTTCGCTATGTATGAGCTGAA
AATTGTTACAGCGCGTTTATTACAACATTTTGAGGTCGGTGCATTAGACG
AAGGTTATGAGGAATTTAATAGGAGACAAATGTTGACCGTCCGACTGGAC
CCAGAAATTCACGTACGCTTAAGGACTTTGTAACTTTCGAGCTTGCACAT
AACGTTTTTGTGATGTGTTTTCTATATCGATGTTTGATCGGTGATTACGG
GATAATGACGCATCTGAAATATTCCTATTTAAAATTAAAGGCTTGGGAca
cgaaaagtttttttcgcgttggtgcaatgcaacatgctctatcccactAA
CACCAGAAAAAAAGTGCGTATACTATGgtttcttttattgtttcacggga
caaaaatcgagggaaatacccaaaagacacgctgattttgtccctgggac
aatggagtaAAATCTTTTCTAATCGATTTTGTTCCATTGACCCaaggaca
aaagtgagagaagcacaaatgttattaaaagaaaaatgggtggagacacg
agaaagcgtttcaggttagtggaatggagcatgttggattgcaccaacgc
gaaaaaaacttctcgtatCCCCAAGCCTTAAACCTTAATGGAGATTTTTT
TATATGTTGGAGCTGATTACAAAAAGCGAACATAATGCATTATTTTCTTA
TTACCTGAAAGGTATTAAACGAACTGCTTTTATTTCCGAGAAAAAGGATG
ACATAAAAAATGTCCTCTCTTGTTTTTTTATTCGTTGTTTGATGGCAACC
TTGATTACAACTTTATACCATAGACCATTTACATGATTTTGGTCTAAAAA
AAGCGATGAGGACATATAAAGACGAGAAACACCTATTATTTTGGGACAAG
TGACATGTTTTctataaaattatgaaaaatattaaaactaTTTAATTTAA
ACctctaaatatttttgttgtaAGATAAATATACCTATAAACCATTCAAA
ATGGTAAATTCATTTCTGCACTCTTTGTAACAGATATTCAATATCACTTA
ACCTTTTGTTAATAAAATAACTTGAACAGAT Coding sequence (CDS) from alignment at sc0000257:192214..200194+ >TCONS_00017040 ID=TCONS_00017040|Name=TCONS_00017040|organism=Clytia hemisphaerica|type=CDS|length=9180bp|location=Sequence derived from alignment at sc0000257:192214..200194+ (Clytia hemisphaerica) ATGATGGTTTTATCATTACTTGGAATGTTaacaaacataatttttttcct tcctgTGGTCCTTTTCATATTGATTGCttataatttattgaaaaattaca TTGCATGCAACAAGCTGAATAGGCATGGGGGATCTTACAAGAAGATTCCA GAACCAGCAAGCTTACCAATTTTGGGACACTCCATGTTTATTTTTACAAT GAAAAATCAAGATGAGTTTAATTACAAACTTGGAAAACAGTTTGAAGAGT ATGGTGTCTATCGCATACGAAATACACTTTTGGGAATGAATTTGGTATTC GTTTTGAAACCAGAATGGGCCAAATATATATTATCAAGACCAGACGAATT TCCACGTGGTGAATTTCTACCAAAGTTTTTTCCACTTCTTGGCAAAGGAT TATTGACTTCAGATGGTGATCTGCATCGTTTCCAGAAAAGAGTGCTTGCA AAAGCATTTACTACGCCACAacttcaaaaatatgttccagtATTTGATCG TCACACCAAAGATTTTGTTAAGaaATTGATATCGATCATCGATAGCAAAA AAGATGGTACCAACATACCGATCCGTAAATATTCAAATGTCTTTTCCTTC AACACCATTGCTGAGATTGCTTTTGGTTATAAATTCAGCGAGAAAAGCTC CAATACTTACCTTAACGCTATCCAACAACAGACAGAATCACTGAAAAACT GGAAAGGCCGTGTTCTACTCAAATTGGTACCGTTCTTGAGATATATACCC GCAATTAATAAAATGGTGACTGCTGAAAATGGAAGACAAGTTCTAGCTGA TGTTTTGTTAACGCGGAAGCAAAAAGTGGAAACAGACTCATTAacggaat ttgagaaaaatgacATGTTGTCAATTATGATGAGAGAGCGGGACGAAAAA ACGGGACAAATATTCACAGATCAAATGATACAGGATGCATGTTTCACTTT TATGTTGGCGGGATATGAAACAACAGCAAGTGCGATCCCTATCGTCCTCT ATTACATGGCGAAGTATCCCAAAGAGCAATCCAAATGCCGAACAGAAATA ATGAACGCCATTCCAACGCCCAACGACACCATGAATTTTAAACACCTTGA TCTACCCTACACGACCGCCTTCATTCGGGAAACGTTACGCCTTTTCCCGA CAGTCAACGGTAATGGCCGAATGTGCGGTAAAGACACGACAATTGAAGAC TATTTCTTCCCAAAAGGAACGCACTTTGCATTCAGTAACTACTTCTTAAA CAGGGATCCAGAATTGTTCGACTACCCGGATGGTTTTCTACCGGAACGTT TTCTTCCCGATAGTGGTATAAAATGTGGCAACATCCTAACCTTTGGTTAT GGACCTTTCAATTGTATTGGGAAGAACTTCGCTATGTATGAGCTGAAAAT TGTTACAGCGCGTTTATTACAACATTTTGAGGTCGGTGCATTAGACGAAG GTTATGAGGAATTTAATAGGAGACAAATGTTGACCGTCCGACTGGACCCA GAAATTCACGTACGCTTAAGGACTTTGTAAATGATGGTTTTATCATTACT TGGAATGTTaacaaacataatttttttccttcctgTGGTCCTTTTCATAT TGATTGCttataatttattgaaaaattacaTTGCATGCAACAAGCTGAAT AGGCATGGGGGATCTTACAAGAAGATTCCAGAACCAGCAAGCTTACCAAT TTTGGGACACTCCATGTTTATTTTTACAATGAAAAATCAAGATGAGTTTA ATTACAAACTTGGAAAACAGTTTGAAGAGTATGGTGTCTATCGCATACGA AATACACTTTTGGGAATGAATTTGGTATTCGTTTTGAAACCAGAATGGGC CAAATATATATTATCAAGACCAGACGAATTTCCACGTGGTGAATTTCTAC CAAAGTTTTTTCCACTTCTTGGCAAAGGATTATTGACTTCAGATGGTGAT CTGCATCGTTTCCAGAAAAGAGTGCTTGCAAAAGCATTTACTACGCCACA acttcaaaaatatgttccagtATTTGATCGTCACACCAAAGATTTTGTTA AGaaATTGATATCGATCATCGATAGCAAAAAAGATGGTACCAACATACCG ATCCGTAAATATTCAAATGTCTTTTCCTTCAACACCATTGCTGAGATTGC TTTTGGTTATAAATTCAGCGAGAAAAGCTCCAATACTTACCTTAACGCTA TCCAACAACAGACAGAATCACTGAAAAACTGGAAAGGCCGTGTTCTACTC AAATTGGTACCGTTCTTGAGATATATACCCGCAATTAATAAAATGGTGAC TGCTGAAAATGGAAGACAAGTTCTAGCTGATGTTTTGTTAACGCGGAAGC AAAAAGTGGAAACAGACTCATTAacggaatttgagaaaaatgacATGTTG TCAATTATGATGAGAGAGCGGGACGAAAAAACGGGACAAATATTCACAGA TCAAATGATACAGGATGCATGTTTCACTTTTATGTTGGCGGGATATGAAA CAACAGCAAGTGCGATCCCTATCGTCCTCTATTACATGGCGAAGTATCCC AAAGAGCAATCCAAATGCCGAACAGAAATAATGAACGCCATTCCAACGCC CAACGACACCATGAATTTTAAACACCTTGATCTACCCTACACGACCGCCT TCATTCGGGAAACGTTACGCCTTTTCCCGACAGTCAACGGTAATGGCCGA ATGTGCGGTAAAGACACGACAATTGAAGACTATTTCTTCCCAAAAGGAAC GCACTTTGCATTCAGTAACTACTTCTTAAACAGGGATCCAGAATTGTTCG ACTACCCGGATGGTTTTCTACCGGAACGTTTTCTTCCCGATAGTGGTATA AAATGTGGCAACATCCTAACCTTTGGTTATGGACCTTTCAATTGTATTGG GAAGAACTTCGCTATGTATGAGCTGAAAATTGTTACAGCGCGTTTATTAC AACATTTTGAGGTCGGTGCATTAGACGAAGGTTATGAGGAATTTAATAGG AGACAAATGTTGACCGTCCGACTGGACCCAGAAATTCACGTACGCTTAAG GACTTTGTAAATGATGGTTTTATCATTACTTGGAATGTTaacaaacataa tttttttccttcctgTGGTCCTTTTCATATTGATTGCttataatttattg aaaaattacaTTGCATGCAACAAGCTGAATAGGCATGGGGGATCTTACAA GAAGATTCCAGAACCAGCAAGCTTACCAATTTTGGGACACTCCATGTTTA TTTTTACAATGAAAAATCAAGATGAGTTTAATTACAAACTTGGAAAACAG TTTGAAGAGTATGGTGTCTATCGCATACGAAATACACTTTTGGGAATGAA TTTGGTATTCGTTTTGAAACCAGAATGGGCCAAATATATATTATCAAGAC CAGACGAATTTCCACGTGGTGAATTTCTACCAAAGTTTTTTCCACTTCTT GGCAAAGGATTATTGACTTCAGATGGTGATCTGCATCGTTTCCAGAAAAG AGTGCTTGCAAAAGCATTTACTACGCCACAacttcaaaaatatgttccag tATTTGATCGTCACACCAAAGATTTTGTTAAGaaATTGATATCGATCATC GATAGCAAAAAAGATGGTACCAACATACCGATCCGTAAATATTCAAATGT CTTTTCCTTCAACACCATTGCTGAGATTGCTTTTGGTTATAAATTCAGCG AGAAAAGCTCCAATACTTACCTTAACGCTATCCAACAACAGACAGAATCA CTGAAAAACTGGAAAGGCCGTGTTCTACTCAAATTGGTACCGTTCTTGAG ATATATACCCGCAATTAATAAAATGGTGACTGCTGAAAATGGAAGACAAG TTCTAGCTGATGTTTTGTTAACGCGGAAGCAAAAAGTGGAAACAGACTCA TTAacggaatttgagaaaaatgacATGTTGTCAATTATGATGAGAGAGCG GGACGAAAAAACGGGACAAATATTCACAGATCAAATGATACAGGATGCAT GTTTCACTTTTATGTTGGCGGGATATGAAACAACAGCAAGTGCGATCCCT ATCGTCCTCTATTACATGGCGAAGTATCCCAAAGAGCAATCCAAATGCCG AACAGAAATAATGAACGCCATTCCAACGCCCAACGACACCATGAATTTTA AACACCTTGATCTACCCTACACGACCGCCTTCATTCGGGAAACGTTACGC CTTTTCCCGACAGTCAACGGTAATGGCCGAATGTGCGGTAAAGACACGAC AATTGAAGACTATTTCTTCCCAAAAGGAACGCACTTTGCATTCAGTAACT ACTTCTTAAACAGGGATCCAGAATTGTTCGACTACCCGGATGGTTTTCTA CCGGAACGTTTTCTTCCCGATAGTGGTATAAAATGTGGCAACATCCTAAC CTTTGGTTATGGACCTTTCAATTGTATTGGGAAGAACTTCGCTATGTATG AGCTGAAAATTGTTACAGCGCGTTTATTACAACATTTTGAGGTCGGTGCA TTAGACGAAGGTTATGAGGAATTTAATAGGAGACAAATGTTGACCGTCCG ACTGGACCCAGAAATTCACGTACGCTTAAGGACTTTGTAAATGATGGTTT TATCATTACTTGGAATGTTaacaaacataatttttttccttcctgTGGTC CTTTTCATATTGATTGCttataatttattgaaaaattacaTTGCATGCAA CAAGCTGAATAGGCATGGGGGATCTTACAAGAAGATTCCAGAACCAGCAA GCTTACCAATTTTGGGACACTCCATGTTTATTTTTACAATGAAAAATCAA GATGAGTTTAATTACAAACTTGGAAAACAGTTTGAAGAGTATGGTGTCTA TCGCATACGAAATACACTTTTGGGAATGAATTTGGTATTCGTTTTGAAAC CAGAATGGGCCAAATATATATTATCAAGACCAGACGAATTTCCACGTGGT GAATTTCTACCAAAGTTTTTTCCACTTCTTGGCAAAGGATTATTGACTTC AGATGGTGATCTGCATCGTTTCCAGAAAAGAGTGCTTGCAAAAGCATTTA CTACGCCACAacttcaaaaatatgttccagtATTTGATCGTCACACCAAA GATTTTGTTAAGaaATTGATATCGATCATCGATAGCAAAAAAGATGGTAC CAACATACCGATCCGTAAATATTCAAATGTCTTTTCCTTCAACACCATTG CTGAGATTGCTTTTGGTTATAAATTCAGCGAGAAAAGCTCCAATACTTAC CTTAACGCTATCCAACAACAGACAGAATCACTGAAAAACTGGAAAGGCCG TGTTCTACTCAAATTGGTACCGTTCTTGAGATATATACCCGCAATTAATA AAATGGTGACTGCTGAAAATGGAAGACAAGTTCTAGCTGATGTTTTGTTA ACGCGGAAGCAAAAAGTGGAAACAGACTCATTAacggaatttgagaaaaa tgacATGTTGTCAATTATGATGAGAGAGCGGGACGAAAAAACGGGACAAA TATTCACAGATCAAATGATACAGGATGCATGTTTCACTTTTATGTTGGCG GGATATGAAACAACAGCAAGTGCGATCCCTATCGTCCTCTATTACATGGC GAAGTATCCCAAAGAGCAATCCAAATGCCGAACAGAAATAATGAACGCCA TTCCAACGCCCAACGACACCATGAATTTTAAACACCTTGATCTACCCTAC ACGACCGCCTTCATTCGGGAAACGTTACGCCTTTTCCCGACAGTCAACGG TAATGGCCGAATGTGCGGTAAAGACACGACAATTGAAGACTATTTCTTCC CAAAAGGAACGCACTTTGCATTCAGTAACTACTTCTTAAACAGGGATCCA GAATTGTTCGACTACCCGGATGGTTTTCTACCGGAACGTTTTCTTCCCGA TAGTGGTATAAAATGTGGCAACATCCTAACCTTTGGTTATGGACCTTTCA ATTGTATTGGGAAGAACTTCGCTATGTATGAGCTGAAAATTGTTACAGCG CGTTTATTACAACATTTTGAGGTCGGTGCATTAGACGAAGGTTATGAGGA ATTTAATAGGAGACAAATGTTGACCGTCCGACTGGACCCAGAAATTCACG TACGCTTAAGGACTTTGTAAATGATGGTTTTATCATTACTTGGAATGTTa acaaacataatttttttccttcctgTGGTCCTTTTCATATTGATTGCtta taatttattgaaaaattacaTTGCATGCAACAAGCTGAATAGGCATGGGG GATCTTACAAGAAGATTCCAGAACCAGCAAGCTTACCAATTTTGGGACAC TCCATGTTTATTTTTACAATGAAAAATCAAGATGAGTTTAATTACAAACT TGGAAAACAGTTTGAAGAGTATGGTGTCTATCGCATACGAAATACACTTT TGGGAATGAATTTGGTATTCGTTTTGAAACCAGAATGGGCCAAATATATA TTATCAAGACCAGACGAATTTCCACGTGGTGAATTTCTACCAAAGTTTTT TCCACTTCTTGGCAAAGGATTATTGACTTCAGATGGTGATCTGCATCGTT TCCAGAAAAGAGTGCTTGCAAAAGCATTTACTACGCCACAacttcaaaaa tatgttccagtATTTGATCGTCACACCAAAGATTTTGTTAAGaaATTGAT ATCGATCATCGATAGCAAAAAAGATGGTACCAACATACCGATCCGTAAAT ATTCAAATGTCTTTTCCTTCAACACCATTGCTGAGATTGCTTTTGGTTAT AAATTCAGCGAGAAAAGCTCCAATACTTACCTTAACGCTATCCAACAACA GACAGAATCACTGAAAAACTGGAAAGGCCGTGTTCTACTCAAATTGGTAC CGTTCTTGAGATATATACCCGCAATTAATAAAATGGTGACTGCTGAAAAT GGAAGACAAGTTCTAGCTGATGTTTTGTTAACGCGGAAGCAAAAAGTGGA AACAGACTCATTAacggaatttgagaaaaatgacATGTTGTCAATTATGA TGAGAGAGCGGGACGAAAAAACGGGACAAATATTCACAGATCAAATGATA CAGGATGCATGTTTCACTTTTATGTTGGCGGGATATGAAACAACAGCAAG TGCGATCCCTATCGTCCTCTATTACATGGCGAAGTATCCCAAAGAGCAAT CCAAATGCCGAACAGAAATAATGAACGCCATTCCAACGCCCAACGACACC ATGAATTTTAAACACCTTGATCTACCCTACACGACCGCCTTCATTCGGGA AACGTTACGCCTTTTCCCGACAGTCAACGGTAATGGCCGAATGTGCGGTA AAGACACGACAATTGAAGACTATTTCTTCCCAAAAGGAACGCACTTTGCA TTCAGTAACTACTTCTTAAACAGGGATCCAGAATTGTTCGACTACCCGGA TGGTTTTCTACCGGAACGTTTTCTTCCCGATAGTGGTATAAAATGTGGCA ACATCCTAACCTTTGGTTATGGACCTTTCAATTGTATTGGGAAGAACTTC GCTATGTATGAGCTGAAAATTGTTACAGCGCGTTTATTACAACATTTTGA GGTCGGTGCATTAGACGAAGGTTATGAGGAATTTAATAGGAGACAAATGT TGACCGTCCGACTGGACCCAGAAATTCACGTACGCTTAAGGACTTTGTAA ATGATGGTTTTATCATTACTTGGAATGTTaacaaacataatttttttcct tcctgTGGTCCTTTTCATATTGATTGCttataatttattgaaaaattaca TTGCATGCAACAAGCTGAATAGGCATGGGGGATCTTACAAGAAGATTCCA GAACCAGCAAGCTTACCAATTTTGGGACACTCCATGTTTATTTTTACAAT GAAAAATCAAGATGAGTTTAATTACAAACTTGGAAAACAGTTTGAAGAGT ATGGTGTCTATCGCATACGAAATACACTTTTGGGAATGAATTTGGTATTC GTTTTGAAACCAGAATGGGCCAAATATATATTATCAAGACCAGACGAATT TCCACGTGGTGAATTTCTACCAAAGTTTTTTCCACTTCTTGGCAAAGGAT TATTGACTTCAGATGGTGATCTGCATCGTTTCCAGAAAAGAGTGCTTGCA AAAGCATTTACTACGCCACAacttcaaaaatatgttccagtATTTGATCG TCACACCAAAGATTTTGTTAAGaaATTGATATCGATCATCGATAGCAAAA AAGATGGTACCAACATACCGATCCGTAAATATTCAAATGTCTTTTCCTTC AACACCATTGCTGAGATTGCTTTTGGTTATAAATTCAGCGAGAAAAGCTC CAATACTTACCTTAACGCTATCCAACAACAGACAGAATCACTGAAAAACT GGAAAGGCCGTGTTCTACTCAAATTGGTACCGTTCTTGAGATATATACCC GCAATTAATAAAATGGTGACTGCTGAAAATGGAAGACAAGTTCTAGCTGA TGTTTTGTTAACGCGGAAGCAAAAAGTGGAAACAGACTCATTAacggaat ttgagaaaaatgacATGTTGTCAATTATGATGAGAGAGCGGGACGAAAAA ACGGGACAAATATTCACAGATCAAATGATACAGGATGCATGTTTCACTTT TATGTTGGCGGGATATGAAACAACAGCAAGTGCGATCCCTATCGTCCTCT ATTACATGGCGAAGTATCCCAAAGAGCAATCCAAATGCCGAACAGAAATA ATGAACGCCATTCCAACGCCCAACGACACCATGAATTTTAAACACCTTGA TCTACCCTACACGACCGCCTTCATTCGGGAAACGTTACGCCTTTTCCCGA CAGTCAACGGTAATGGCCGAATGTGCGGTAAAGACACGACAATTGAAGAC TATTTCTTCCCAAAAGGAACGCACTTTGCATTCAGTAACTACTTCTTAAA CAGGGATCCAGAATTGTTCGACTACCCGGATGGTTTTCTACCGGAACGTT TTCTTCCCGATAGTGGTATAAAATGTGGCAACATCCTAACCTTTGGTTAT GGACCTTTCAATTGTATTGGGAAGAACTTCGCTATGTATGAGCTGAAAAT TGTTACAGCGCGTTTATTACAACATTTTGAGGTCGGTGCATTAGACGAAG GTTATGAGGAATTTAATAGGAGACAAATGTTGACCGTCCGACTGGACCCA GAAATTCACGTACGCTTAAGGACTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00017040-exon-sc0000257-1491911889:192214..192735 | TCONS_00017040-exon-sc0000257-1491911889:192214..192735 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1510915933:192214..192735 | TCONS_00017040-exon-sc0000257-1510915933:192214..192735 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1575043694:192214..192735 | TCONS_00017040-exon-sc0000257-1575043694:192214..192735 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1491911889:195128..195369 | TCONS_00017040-exon-sc0000257-1491911889:195128..195369 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1510915933:195128..195369 | TCONS_00017040-exon-sc0000257-1510915933:195128..195369 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1575043694:195128..195369 | TCONS_00017040-exon-sc0000257-1575043694:195128..195369 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1491911889:196262..196540 | TCONS_00017040-exon-sc0000257-1491911889:196262..196540 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1510915933:196262..196540 | TCONS_00017040-exon-sc0000257-1510915933:196262..196540 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1575043694:196262..196540 | TCONS_00017040-exon-sc0000257-1575043694:196262..196540 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1491911889:197565..197777 | TCONS_00017040-exon-sc0000257-1491911889:197565..197777 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1510915933:197565..197777 | TCONS_00017040-exon-sc0000257-1510915933:197565..197777 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1575043694:197565..197777 | TCONS_00017040-exon-sc0000257-1575043694:197565..197777 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1491911889:198078..198375 | TCONS_00017040-exon-sc0000257-1491911889:198078..198375 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1510915933:198078..198375 | TCONS_00017040-exon-sc0000257-1510915933:198078..198375 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1575043694:198078..198375 | TCONS_00017040-exon-sc0000257-1575043694:198078..198375 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1491911889:199079..200194 | TCONS_00017040-exon-sc0000257-1491911889:199079..200194 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1510915933:199079..200194 | TCONS_00017040-exon-sc0000257-1510915933:199079..200194 | Clytia hemisphaerica | exon |
TCONS_00017040-exon-sc0000257-1575043694:199079..200194 | TCONS_00017040-exon-sc0000257-1575043694:199079..200194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000257 | supercontig | sc0000257:192214..200194 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005506 | iron ion binding |
GO:0020037 | heme binding |
GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
molecular_function |
GO:0020037 |
heme binding |
molecular_function |
GO:0005506 |
iron ion binding |
molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00017040 vs. Swiss-Prot (Human)
Match: CP4AB (Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.196e-38 Identity = 122/398 (30.65%), Postives = 193/398 (48.49%), Query Frame = 3
Query: 537 VFVLKPEWAKYILSRPDEFPRGEFLPKFF-PLLGKGLLTSDGDLHRFQKRVLAKAFTTPQLQKYVPVFDRHTKDFVXXXXXXXXXXXXGTNIPIRKYSNV--FSFNTIAEIAFGYKFS---EKSSNTYLNAIQQQT----ESLKN--WKGRVLLKLVPFLRYIPAINKMVTAENGRQVLADVLLTRKQKVETDSLTEFEKN----DMLSIMMRERDEKTGQIFTDQMIQDACFTFMLAGYETTASAIPIVLYYMAKYPKEQSKCRTEIMNAIPTPNDTMNFKHLD-LPYTTAFIRETLRLFPTVNGNGRMCGKDTTIED-YFFPKGTHFAFSNYFLNRDPELFDYPDGFLPERFLPDSGIKCGNILTFGYGPFNCIGKNFAMYELKIVTARLLQHFEV 1676
V + P++ K IL R D G + +F P +G GLL +G +R+L AF L+ YV + + + K ++ G + P+ + +V + +TI + AF ++ S +++S +Y+ AI ++N + + L R+ ++ Q V+ RK +++ + E K D L I++ + E G I +D+ ++ TFM G++TTAS I +LY +A +PK Q +CR EI +++ ++ + HLD +PYTT I+E LRL+P V G GR T D PKG S Y L+ +P+++ P+ F P RF P S L F G NCIGK FAM ELK+ TA L FE+
Sbjct: 97 VQLYDPDYMKVILGRSDPKSHGSY--RFLAPWIGYGLLLLNGQTWFQHRRMLTPAFHYDILKPYVGLMADSVRVMLDKWEELL-----GQDSPLEVFQHVSLMTLDTIMKCAFSHQGSIQVDRNSQSYIQAISDLNNLVFSRVRNAFHQNDTIYSLTSAGRWTHRACQL-----AHQHTDQVIQLRKAQLQKEGELEKIKRKRHLDFLDILLLAKME-NGSILSDKDLRAEVDTFMFEGHDTTASGISWILYALATHPKHQERCREEI-HSLLGDGASITWNHLDQMPYTTMCIKEALRLYPPVPGIGRELSTPVTFPDGRSLPKGIMVLLSIYGLHHNPKVWPNPEVFDPFRFAPGSAQHSHAFLPFSGGSRNCIGKQFAMNELKVATALTLLRFEL 480
The following BLAST results are available for this feature:
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