TCONS_00017055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017055
Unique NameTCONS_00017055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017055 ID=TCONS_00017055|Name=TCONS_00017055|organism=Clytia hemisphaerica|type=transcript|length=557bp
AGCTTTTGTCAACGGAGAAACCATCAATTGTCTCAGTTACAACGCCAAAA
AGGGAGTTCTTGCTGGTGGTACGAACAAAGGTCACATCGCAATTTGGAAA
AACAATCTATTCAAACCTGACGATCCTTGGGATTTACAATCACCCTGTGA
AGTGGAGGGCGGTGTTCAATCTATAGAGTGGGGAGGTGGTGGGTCATTGA
TGGCATCCATCACTGATCAATCAGCCACCATTCTGAGTGAATCCATCATG
AATGTCCATTTCAACCAACACGTGGTAGCAGTACAGACTGCACCCAACCA
ATTGACCGTCCGAACCCTCCCATCGTCCGAATCAACTGATTTGAAGACAG
ACATCCACATCAAAGGAGTGTACTGCACAAAGAATTTCATCGCTATTTGG
AACAGCCGGAAAGTGGCCATTTATGAAATCTCTGACAACAAATCACTGAT
TCGATCTGCTGGGACGTTCAACTCTGACGCAGCAACAGTGGCCATGTATG
AACAAAATATCTATATCCTGGAAGGTGAAAAAATCTCCATACGAACTTTC
CAGgtat
Run BLAST on NCBI

transcript from alignment at sc0000257:283575..292622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017055 ID=TCONS_00017055|Name=TCONS_00017055|organism=Clytia hemisphaerica|type=transcript|length=9048bp|location=Sequence derived from alignment at sc0000257:283575..292622- (Clytia hemisphaerica)
AGCTTTTGTCAACGGAGAAACCATCAATTGTCTCAGTTACAACGCCAAAA
AGGGTAAGATTCGACACTTTTTTACACGTCAACGGTTCTACGACTTATAT
TCCAAATTTTTTTAAAAGCTTATTCGCTTCAAAATCTTGAAAATACAGTG
GACGCTCTCTAATTCGACGTTCTACTAATCGATAAGCTCCCGTTTTCGAT
CAAATTGAAAGTCACCGTCAAATTTCCTTAAGAAACTCTCATAAACTACG
CTCTTCTACTACTCATTCTATTATTCGATAAGCTCCCGTTTTCGATGAAA
ATTTGAAGTCCCTTGCAGCTTTTTCGCTCTCTTATTCGATTTCTAGCGTG
TAAAAAGGTCTTTAGGACGGAGTTTGAAATTCAAATTTTCGATTTTTTTG
CGTTTGAATTATAATTTCGAAATTCGATTCCTCAAAACTTTTCAAAACAG
GTTTTCAGCAAGAACTTAAGTAGACATCTATCCTGATTCGCGTTCAAACC
AATCGAGTCTCGCTTATATTTTTCTTTCTCAGCTCTATAATTCGATATTT
TCCTCGTGTTTATCGGATTAGGGAGACTTCCTACTATTCGATACGCTCCC
GTATTCGATGAAAATCCGATTCCCCTTGAAAATCGAATTAGAGAGCGTCA
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AGAAAATTTAAACTACTATTGGGGCTGTCCATATTGTATTTGTGCACTGA
AAATATCGAAAATTTGGTACCCCTGCCCCTGTTCCAAAGCGTATGCAAAT
GCCTGCCATTCCAATTTGTAAATGGGAGGGGGCAACACAGAATTTAAGTC
AAAATGATTTTTGAAAAACTTCGGATTTCTAAGACATTTTCTGAAAAATG
AGAAAAACATGGAATTTCAAATGCCTCCTCTAAAAAAGTGTAATTTACAA
AAGTATTTACATTTTAAGACGGAACCAGACCTATGTGATCAATCCTATCG
ACCATCGGGATGGCTTGATGACAGAGCGATATGTGATTGATGGATTACTT
ATCGATCCGGATAGGGCGGCAATCACAAATATCTTTGCTTCACGTCACCC
GACCGACTCCTGAAAATTGAGTAAAATTGAGTCGGAGAGTTGGTAAATTT
TTCGGACTTTTTGTTTTGATAACGTTTCCTTTGCTCAAAAATTTTATTTT
TGTCAATTTTTGTGAGCGATTTCTAGCGCATTTGCAGCATTTTAACTTTG
TTTATCATTACACGTGTGCCATTAGGTGTCAAAGGTCACAGTGTTTATAT
CTCATAATCTGAAACCACGCAAAACATACACGCGATTGGGCCTCCTGCCG
CCTCAGTTAACGCCCTTTTACCTTTTACCGCCTCACAGACCAATTTTAAG
AAAACCCGAAAATTTTTACTACCGACCGACCGACAGACTCACTTTTTAAA
TCCAACGAGGACGCGAAATGAAGATAGTTTTTGATTGCCGCCTAGGAGAT
TGATAGAGGATTCAGCCATAAAAAAGTCTCGAGTATTGATCCTTTGCTGA
TTATTTATCAAGCTAGTATTAGTTCAATCAAGTATATCGATTGTAAATCG
ATAGAGCTCGATCATTCGAAAGAATGGATAAAATCGATAATTAATCATAA
GCTTATAAAATCTTGAGTATCGATCTTTGATCAATCTCCTATCCGAATCG
ATAAGTAATCCATCAATCACATCTCGATCTGTCAGCAAGCTATCCCGATG
ATAGATCCTATTGTATTGGGGGGGGGGGGGGGTCTGGGAAGGAAATTCTA
AACCAAGGCCCTAATTTTTACGAAAATGTCTTCCGCACGGGGTAAAGATG
ACAAAGTTTTAAAAAAAGGTCTGAGTGCGAAAAAGTTGAACATGTGCCTG
TAAAGTTGGATGCATGTAAACAAACTTTTTGAGTCTTTTTATGTTTGTCT
GCGAGTGAGGTAAATCTATTTTGACGGCCAGAAAAAAAGCAATGTACCTT
TCAAAAATTAATCCTTATTGTTCATGGCACTTGGAAGCAGGAGAGATGTT
GCCACACCACGGTTGAATGACAAAAAGAAATTAAACAGAAATAATATAAA
AGCATCCTTCTTCTTCCTCGATAAGATTTTAAAAGAAAGTTTCGCAGAAA
TCCAACCAGGTTGTTGAGAGCTAGCCTGGGCATAGGCTGATTTAATTATA
AATAACGAACATTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGGTTTTTTACTTTATGACGGAATGCGGCTAATA
GCTTAGCGTTACACACGAACACGACTCTCTTTAAAGGCCCAGTACGCTAA
AGCTCTGGGCCAATTACGTGTTATGATTAGGAACCTTGTATCGATTATTT
TTTCAGAGTGTGAAAACCACTGCCCACTTAGACGTGAAGATTTTAAGATA
AGAAACTTTCAATGATAATGTGATGCGTGCGACTCTCAATGTTCACAAAA
TGCCAGCCCAAAAATAATATCCTTATGAAATTTATATATTCTTTTATCCT
TAAATCAGTTGAAACTATTTCGAATCGCATTTTAACTAAGATTTCTCGCA
AAATTAGGTTTTTCAAAATCAACGGACCAGCCTCTTTCTGTTCTTATAAA
GTTATAGATTTATGTTTTTTTGCTTTCAATATGGTACATCAAAGAAAAGC
CGCTTTGAATAGATTTATAAAAGATTTCAACGACCATTTAGGTCATTACC
GAGACGTTTTCTAGATAACGGAGCCCCGTGAAAATAATCTGAAAATTGTG
GTAAAGTCCTAAATTACTGGGATATCCACGTTAAATATCGACTCTCATTC
TTTGTCTAAAATATTGTCTTTTTACATCAAAATAAGTATCAATAAACGTT
GCGTTGACAGTTTCGCAGTTGTTAGTGCAAAAGATACTTCCATAGTGGGC
AGAGGGGTATCAAGCCCCCCCCTTAAATAAAATGAAATTTGTTGGTTATT
ATATATTGTATTTTTATATTGTATTTTGTTCAGGAGTTCTTGCTGGTGGT
ACGAACAAAGGTCACATCGCAATTTGGAAAAACAATCTATTCAAACCTGA
CGATCCTTGGGATTTACAATCACCCTGTGAAGTGGAGGGCGGTGTTCAAT
CTATAGAGGTTAGTTATAAGCGGTCGCGAACGGCGAATTTCGCTGGTCCA
AGTCACGAAAAAAAAAATATTTCACCGGTCTAAAATTTCGGGTTGCTGCC
TCAAGTACATACTCACGCTCATCAATATTCTAGTCTTGCTAAAAACCCGC
TAGCCTAGAATCTAGAATTGGCCAGAGTTAATTTTTTCATTCGCCAGCCT
ATCAAAACAAAGTGAAAACCGCTGAATTTGTTTCATGATGTCTACTTTGA
GGTGTCTATCAATTGCTTGTACATAATGCATTTATATCATCCTCTGGTGA
ATTTGTCATGTATATCTTTAGACTGGAGTCGTTTATAATGCGTGTAATAC
AGTAGTATAGGCGTTATATGATAATACGATTATTGTTACGAGATTTAGTT
TGTATAAACTAAAATTGTTCCCTCCATTACTTTTTGCTTTATTTCTACTA
TGTCTGAATTAGCTGTCTGGCTTGCTAGACTTGTATATCTTCGAAGAAAA
CTCTTTGAGGACAATTTAATGAGCTTGTGTCTTGAAGCTTTTGTACATAA
CACTTCAATGAAAGTTCGATGAAATGTTAATTCAAACATAGTAGAAATCA
AGCAAAAAGTAACGGAGGGAACAATTTTAGTTTATACAAACTAAATTCCG
TAACAATAATCGTATTATCATATACCAGCCTACTACCATATACCATACTA
CTGTATTACACGCATTATAAACGACTCTAATATGAATAGAATATGAATTT
AGATTTTATATACTGAGCTGGTCAGTGCAAGACAATCGATGGTATCACTA
TTAATATTCACATACCTTATAAATCTTGACTCTTTTGTGAGGTATAAATT
CATATGATATTATTATCGATATTTCAGTGGGGAGGTGGTGGGTCATTGAT
GGCATCCATCACTGATCAATCAGCCACCATTCTGAGTGAATCCATCATGA
ATGTCCATTTCAACCAACACGTGAGTCTTTTATCTGTGAAGGATGTTTCA
CAAATCAGAAACGTTTCGTTTACTAGGGGATAAATTGTCCACTTGTCTCG
TAAGGAGTCGGGAAAATTTGTCTAGAAATATCGACTAAAAACTGACTTTT
AGAGCCGTGGTGACTTTGAAAATTTCCGCATAAAGTATGTCTCATTATAA
TTTACAAAAACTACAGTTTTTTTGTCTCTGCTGCATATTATATTGAGACA
GACTCTCCTCCAGTAAAGCTTTTTTCGCATGTACGTAAAATCTTACTTAA
GACCTAATGGTAAATGGCTCGTAAGCCTGTCTTTTGGGAATTTCCCCGAC
ATCATGTAGAGTTTCTATTGGTCAAGAGGTTCTCGATTGACTTTTGCTGC
CGTTTAAAAACTTATACTATAGAAACTCCCCATTCTTGAAGGTGTTATGT
AAAATTTACGTACATGTGAAAAAAGCTTTACTAGAATCTGTCTCAATATA
ATATGCAGCGGAGACAAAAAAAGCTCTACTTTTTAGTAGAATTCGAATTA
GATAGCGGTTTTGTGTTCGTTGAAAAGACAAACGTGAGTGCAATATCATG
TGCTTTAATTATCATTTTCACACGAGTGATTCTTTGAACATCATTAATGT
AAAAACTTTTTCAAACTACTTTCTCTTTGGAACTCTCTATCTGCAGGTGG
TAGCAGTACAGACTGCACCCAACCAATTGACCGTCCGAACCCTCCCATCG
TCCGAATCAACTGATTTGAAGACAGACATCCACATCAAAGGAGTGTACTG
CACAAAGAATTTCATCGCTATTTGGAACAGCCGGAAAGTGGCCATTTATG
AAATCTCTGACAACAAATCACTGATTCGATCTGCTGGTAAAGGCCGGCGC
AAATGAATCCAACATTTGATCCAACGTTATTGTTGTCATAAAATTGCAAC
TTTTTAAGAAAATTGTTGGAAATCATGTTGGATGAAGTTTGATCGCCGTC
AAACTTTTTATCCAACATTTTTAATGAGATTGACGTCACTTTTATGTTGG
TTTCGATGTTGGATGCATTTGCGTAATCATGTTGGATGAAAATGTTTGAC
GTTTTTGCGCAAATGACTTTTCATGCAACTTTTCGAATTTTTCCACGTGA
CTTTTCGTCCAACATTTCATCAAACAATGAATTTGAAATGTTGGATTCAT
TTGCGCCGGCCTTAAGAATGAGGATTATTTTTCAAGGGCTTTGTTACAAC
GGTAGCCTTTTCCTAGCGGTGTAGTAAGCACATCAAAAAATTTCATCGCT
ATTTTGGAACAGCTAGCCAGCCAAAAAAGTAATTACAAATTGTAGATGTA
CAAACTGGTATTACCCCGTTGCGATTATTGTATTGTGACACTAATATTAC
TGTATTGCATGGAATATAAACTACACCAGTCTTTTATATTGATCAATATG
AAAGCATGACAAAGACATAAGTTTTTATATATCCCTTGTTAGACTGGTTT
TAAAAAATTCTTTGTAACCTAGGGCCTATTTTTAAGCAAAATGGATTTTA
TTTGAGCCTACATTTGCATTAAGATATTCTGTTGATAGGAACAGATTCTG
TCCTTCTGCAAAAAACACCTGATAACATACTCTCCTTCGTCACACCATAC
AGGGACGTTCAACTCTGACGCAGCAACAGTGGCCATGTATGAACAAAATA
TCTATATCCTGGAAGGTGAAAAAATCTCCATACGAACTTTCCAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009536XLOC_009536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017055-exon-sc0000257-1575043694:292570..292622TCONS_00017055-exon-sc0000257-1575043694:292570..292622Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1575043694:286265..286389TCONS_00017055-exon-sc0000257-1575043694:286265..286389Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1575043694:285303..285395TCONS_00017055-exon-sc0000257-1575043694:285303..285395Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1575043694:284437..284626TCONS_00017055-exon-sc0000257-1575043694:284437..284626Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1575043694:283575..283670TCONS_00017055-exon-sc0000257-1575043694:283575..283670Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1510915933:292570..292622TCONS_00017055-exon-sc0000257-1510915933:292570..292622Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1510915933:286265..286389TCONS_00017055-exon-sc0000257-1510915933:286265..286389Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1510915933:285303..285395TCONS_00017055-exon-sc0000257-1510915933:285303..285395Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1510915933:284437..284626TCONS_00017055-exon-sc0000257-1510915933:284437..284626Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1510915933:283575..283670TCONS_00017055-exon-sc0000257-1510915933:283575..283670Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1491911889:292570..292622TCONS_00017055-exon-sc0000257-1491911889:292570..292622Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1491911889:286265..286389TCONS_00017055-exon-sc0000257-1491911889:286265..286389Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1491911889:285303..285395TCONS_00017055-exon-sc0000257-1491911889:285303..285395Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1491911889:284437..284626TCONS_00017055-exon-sc0000257-1491911889:284437..284626Clytia hemisphaericaexon
TCONS_00017055-exon-sc0000257-1491911889:283575..283670TCONS_00017055-exon-sc0000257-1491911889:283575..283670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:283575..292622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.74658	4.1465	4.08241	2.5638	0.450787	0	2.04119	0	0	1.13417	0	0.112725	0	0	0.321354	0.669437	1.03934	0	0	0	9.00626	6.04426	1.11112	0	0	0
Blast
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BLAST of TCONS_00017055 vs. Swiss-Prot (Human)
Match: IF140 (Intraflagellar transport protein 140 homolog OS=Homo sapiens GN=IFT140 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.099e-45
Identity = 79/191 (41.36%), Postives = 123/191 (64.40%), Query Frame = 2 
Query:    2 AFVNGETINCLSYNAKKGVLAGGTNKGHIAIWK---NNLFKP----DDPWDLQSPCEVEGGVQSIEWGGGGSLMASITDQSATILSESIMNVHFNQHVVAVQTAPNQLTVRTLPSSESTDLKTDIHIKGVYCTKNFIAIWNSRKVAIYEISDNKSLIRSAGTFNSDAATVAMYEQNIYILEGEKISIRTFQ 553
             F  GE +NC+ Y   KG+LA GT++G +A+W+   + L  P     D W LQ+P E++G +  I+WG   +L+A  +  S  ILSE  M+ HF+Q V A+Q +P+ L V  L +  +  L+TD+HI GV+ TK+ +A+WN R+VAI+E+S   + IRSAGTF  +   +AM+E+N+Y +E  ++ +RT+Q
Sbjct:  320 GFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVPDFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNSVISVAILSERAMSSHFHQQVAAMQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSG--AAIRSAGTFLCETPVLAMHEENVYTVESNRVQVRTWQ 508
The following BLAST results are available for this feature:
BLAST of TCONS_00017055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1401.099e-4541.36Intraflagellar transport protein 140 homolog OS=Ho... [more]
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