TCONS_00017073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017073
Unique NameTCONS_00017073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017073 ID=TCONS_00017073|Name=TCONS_00017073|organism=Clytia hemisphaerica|type=transcript|length=578bp
TTGGTGGATTACAAACATTTCATCATCAGTTCACAAAGTGAATATTAAAA
ACAATGTATTAGTATGCTAACCACTGACAAGACAGTATTCGTTGAAGGCC
CTATCAATATTTGGTTGGGCAAGAAGAGAGAAGAATATTTCATACTGAAA
ACAGGGCGTCAAGATTTGGTGACTTGTGATGAATTGACAGTACAACCGGA
TGAAGAAAGAAAAGGAGTGGTATTAGCCGTTTGTTTTGCAACGCGTCCTT
ACAGAGAGAACATTTCAAAATGGCTGACTTATCTCCAAGAAGAAAACAAG
CAATTGAAAGAAATGAGCATTGTTTATAATATTTCTGATGGCGAAGTTGG
TTATGAAAGACCCACATTGGCTCCACCTGTAGAGGAATATTGATTTAATA
ATggtgtactcttaggttccaaataagcggggggttcgaataaacgaggg
gggcctaattgccggggggattggaaattgtacttctgaaacccaaaaat
aaggtcaaaataggctaaaatcaagctatttagagcaaaataagggtcct
tctctttgacagctgaatatattcttag
Run BLAST on NCBI

protein sequence of TCONS_00017073-protein

>TCONS_00017073-protein ID=TCONS_00017073-protein|Name=TCONS_00017073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MLTTDKTVFVEGPINIWLGKKREEYFILKTGRQDLVTCDELTVQPDEERK
GVVLAVCFATRPYRENISKWLTYLQEENKQLKEMSIVYNISDGEVGYERP
TLAPPVEEY
Run BLAST on NCBI

transcript from alignment at sc0000257:339018..339951-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017073 ID=TCONS_00017073|Name=TCONS_00017073|organism=Clytia hemisphaerica|type=transcript|length=934bp|location=Sequence derived from alignment at sc0000257:339018..339951- (Clytia hemisphaerica)
TTGGTGGATTACAAACATTTCATCATCAGTTCACAAAGTGAATATTAAAA
ACAATGTATTAGTATGCTAACCACTGACAAGACAGTATTCGTTGAAGGCC
CTATCAATATTTGGTTGGGCAAGAAGAGAGAAGAATATTTCATACTGAAA
ACAGGGCGTCAAGATTTGGTGACTTGTGATGAATTGACAGTACAACCGGA
TGAAGAAAGAAAAGGTTGCCTTTTTGTTTGTAGATTCTTAGACGTAATTT
ATATGGCCGGTTTTTTGCCGTGTCTAACTCAAATAACTTCATCAAAAAAA
CTCGAATCGATTGCGGCAAAAGTGCGGCTGTATAAATGAAATTTTCAACA
TTTTTGAATTTGTGAAAAAGGGTTGTGCCCTTGCTAACTGACAGTGACGT
GCCATGTATTTTCGAAATATGAATCAATTCGCAAAAAAAAAAAAATTATT
TTTCAACCATAGGTTTGACTGAAAAGAGTCAATCTGCTTGCTCTCGTAAA
TTTCTGTGTATCGGGAAGGAATGAGTTTATTTTTCAGTGTATCTTCATTT
TATATTATTTGTTATTTCAGGAGTGGTATTAGCCGTTTGTTTTGCAACGC
GTCCTTACAGAGAGAACATTTCAAAATGGCTGACTTATCTCCAAGAAGAA
AACAAGCAATTGAAAGAAATGAGCATTGTTTATAATATTTCTGATGGCGA
AGTTGGTTATGAAAGACCCACATTGGCTCCACCTGTAGAGGAATATTGAT
TTAATAATGGTGTACTCTTAGGTTCCAAATAAGCGGGGGGTTCGAATAAA
CGAGGGGGGCCTAATTGCCGGGGGGATTGGAAATTGTACTTCTGAAACCC
AAAAATAAGGTCAAAATAGGCTAAAATCAAGCTATTTAGAGCAAAATAAG
GGTCCTTCTCTTTGACAGCTGAATATATTCTTAG

Coding sequence (CDS) from alignment at sc0000257:339018..339951-

>TCONS_00017073 ID=TCONS_00017073|Name=TCONS_00017073|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000257:339018..339951- (Clytia hemisphaerica)
GAGTGGTATTAGCCGTTTGTTTTGCAACGCGTCCTTACAGAGAGAACATT
TCAAAATGGCTGACTTATCTCCAAGAAGAAAACAAGCAATTGAAAGAAAT
GAGCATTGTTTATAATATTTCTGATGGCGAAGTTGGTTATGAAAGACCCA
CATTGGCTCCACCTGTAGAGGAATATTGAATGCTAACCACTGACAAGACA
GTATTCGTTGAAGGCCCTATCAATATTTGGTTGGGCAAGAAGAGAGAAGA
ATATTTCATACTGAAAACAGGGCGTCAAGATTTGGTGACTTGTGATGAAT
TGACAGTACAACCGGATGAAGAAAGAAAAGGAGTGGTATTAGCCGTTTGT
TTTGCAACGCGTCCTTACAGAGAGAACATTTCAAAATGGCTGACTTATCT
CCAAGAAGAAAACAAGCAATTGAAAGAAATGAGCATTGTTTATAATATTT
CTGATGGCGAAGTTGGTTATGAAAGACCCACATTGGCTCCACCTGTAGAG
GAATATTGAATGCTAACCACTGACAAGACAGTATTCGTTGAAGGCCCTAT
CAATATTTGGTTGGGCAAGAAGAGAGAAGAATATTTCATACTGAAAACAG
GGCGTCAAGATTTGGTGACTTGTGATGAATTGACAGTACAACCGGATGAA
GAAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009539XLOC_009539Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017073-proteinTCONS_00017073-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017073-exon-sc0000257-1575043694:339738..339951TCONS_00017073-exon-sc0000257-1575043694:339738..339951Clytia hemisphaericaexon
TCONS_00017073-exon-sc0000257-1575043694:339018..339381TCONS_00017073-exon-sc0000257-1575043694:339018..339381Clytia hemisphaericaexon
TCONS_00017073-exon-sc0000257-1510915933:339738..339951TCONS_00017073-exon-sc0000257-1510915933:339738..339951Clytia hemisphaericaexon
TCONS_00017073-exon-sc0000257-1510915933:339018..339381TCONS_00017073-exon-sc0000257-1510915933:339018..339381Clytia hemisphaericaexon
TCONS_00017073-exon-sc0000257-1491911889:339738..339951TCONS_00017073-exon-sc0000257-1491911889:339738..339951Clytia hemisphaericaexon
TCONS_00017073-exon-sc0000257-1491911889:339018..339381TCONS_00017073-exon-sc0000257-1491911889:339018..339381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:339018..339951 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.53287	8.41323	5.01622	4.44959	3.6635	3.85946	7.64493	6.53868	3.24404	2.79596	3.91428	1.62214	0.922772	1.35759	1.40931	3.00316	2.44963	3.26224	1.21417	1.91627	4.88947	5.44064	8.98212	9.02257	3.05593	3.40873	1.79402	1.59731	5.80468	7.16368
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029342ECIST_C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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