TCONS_00017084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017084
Unique NameTCONS_00017084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017084 ID=TCONS_00017084|Name=TCONS_00017084|organism=Clytia hemisphaerica|type=transcript|length=620bp
CTTAAGTCTGTGGGTAACTTTCTGTTGGATTCGTGATCTTTTTTAGGTTT
TagtcaaaaagttcaaaataagtaaaaaagttCAAAGTAAAAAAGTCCAA
CAGTAAGTCCATTTTGGAGTGTGGACTTTTAGACTTGAAAATCTTTCAAG
CTttataaggtttttttaagGGGATTTTAAAGGCGAAAAAGGCTTATGTC
CATTCTAGTCAATAGAATCCTCCTCTAGAAGGAGTAAGAAGCTCGTTCAT
AGTTTGTTGGATAGCTTAGCCACCGGGACCTTCCCTTTTGGCTTCGCCCT
ACTATATAGCCAATGTCTGATATACCCGACATTGGCATAGCCCATGGCTA
ATGGATTCATCATTATAATCAATAACTGATTGATTTAGTGCCTACTCACA
ATGTTTTTGGCTGCTGATTAtcgattgtttttattgattattgagaaaaa
aagtaaaatgattGTGTGACTCCAAAGAATCCTACTTTTAGGCATTTTTg
ggtccaaaatttttttttgaagatttggcTCTATAAGGTTTTAAACACTA
CTATagcattgtgcaaaaaatctaaaaaataccGAGCCAATCGCAAGAAA
Tgctaatttttcctaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000257:174095..174714

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017084 ID=TCONS_00017084|Name=TCONS_00017084|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at sc0000257:174095..174714 (Clytia hemisphaerica)
atttttaggaaaaattagcATTTCTTGCGATTGGCTCggtattttttaga
ttttttgcacaatgctATAGTAGTGTTTAAAACCTTATAGAgccaaatct
tcaaaaaaaaattttggacccAAAAATGCCTAAAAGTAGGATTCTTTGGA
GTCACACaatcattttactttttttctcaataatcaataaaaacaatcga
TAATCAGCAGCCAAAAACATTGTGAGTAGGCACTAAATCAATCAGTTATT
GATTATAATGATGAATCCATTAGCCATGGGCTATGCCAATGTCGGGTATA
TCAGACATTGGCTATATAGTAGGGCGAAGCCAAAAGGGAAGGTCCCGGTG
GCTAAGCTATCCAACAAACTATGAACGAGCTTCTTACTCCTTCTAGAGGA
GGATTCTATTGACTAGAATGGACATAAGCCTTTTTCGCCTTTAAAATCCC
cttaaaaaaaccttataaAGCTTGAAAGATTTTCAAGTCTAAAAGTCCAC
ACTCCAAAATGGACTTACTGTTGGACTTTTTTACTTTGaacttttttact
tattttgaactttttgactAAAACCTAAAAAAGATCACGAATCCAACAGA
AAGTTACCCACAGACTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009549XLOC_009549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017084-exon-sc0000257-1491911889:174095..174714TCONS_00017084-exon-sc0000257-1491911889:174095..174714Clytia hemisphaericaexon
TCONS_00017084-exon-sc0000257-1510915933:174095..174714TCONS_00017084-exon-sc0000257-1510915933:174095..174714Clytia hemisphaericaexon
TCONS_00017084-exon-sc0000257-1575043694:174095..174714TCONS_00017084-exon-sc0000257-1575043694:174095..174714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:174095..174714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.431603	0.420881	1.36831	1.9124	1.16408	0.551923	0.776851	0.519484	0.436444	0.270303	0.874543	0.402423	0.746318	0.834679	1.07834	0.578614	0.388803	0.996276	0.917606	0.768167	1.16843	1.95402	0.29692	0.179962	0	0.165427	1.06526	0.631599	0	0.292843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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