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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017099 ID=TCONS_00017099|Name=TCONS_00017099|organism=Clytia hemisphaerica|type=transcript|length=1405bpRun BLAST on NCBI protein sequence of TCONS_00017099-protein >TCONS_00017099-protein ID=TCONS_00017099-protein|Name=TCONS_00017099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp WGNKTATLKELEEVHPLIEEYKSRLVGIGEVGLDFTPRYITCKEDKEEQRRun BLAST on NCBI transcript from alignment at sc0000259:147365..171116+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017099 ID=TCONS_00017099|Name=TCONS_00017099|organism=Clytia hemisphaerica|type=transcript|length=23752bp|location=Sequence derived from alignment at sc0000259:147365..171116+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000259:147365..171116+ >TCONS_00017099 ID=TCONS_00017099|Name=TCONS_00017099|organism=Clytia hemisphaerica|type=CDS|length=4608bp|location=Sequence derived from alignment at sc0000259:147365..171116+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017099 vs. Swiss-Prot (Human)
Match: TATD3 (Putative deoxyribonuclease TATDN3 OS=Homo sapiens GN=TATDN3 PE=1 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 6.875e-76 Identity = 117/186 (62.90%), Postives = 147/186 (79.03%), Query Frame = 2
Query: 8 NKTATLKELEEVHPLIEEYKSRLVGIGEVGLDFTPRYITCKEDKEEQRNVFRKQIGIAKQFNIPVNVHSRSAGRPVIDILMEEGADKVVLHAFDGNVKVAMRGVEAGYYFSVPPSIIRSEQKQKLVSKIPLSNLLLETDAPALGPEKMVRNVPSNILISCQEIARIKGFSCDEVIEETTKNAKHLF 565
++ TLK+L+ P+IE YK RL+ IGEVGLDF+PR+ E KEEQR V +QI +AK+ N+PVNVHSRSAGRP I++L E+GA+KV+LHAFDG VAM GV AGY+FS+PPSIIRS QKQKLV ++PL+++ LETD+PALGPEK VRN P NI IS + IA++KG S +EVIE TT+NA LF
Sbjct: 80 QRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 265 The following BLAST results are available for this feature:
BLAST of TCONS_00017099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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